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For: Lafontaine DA, Wilson TJ, Zhao ZY, Lilley DMJ. Functional group requirements in the probable active site of the VS ribozyme. J Mol Biol 2002;323:23-34. [PMID: 12368096 DOI: 10.1016/s0022-2836(02)00910-5] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Number Cited by Other Article(s)
1
Yoon S, Harris ME. Beyond the Plateau: pL Dependence of Proton Inventories as a Tool for Studying Ribozyme and Ribonuclease Catalysis. Biochemistry 2021;60:2810-2823. [PMID: 34495648 DOI: 10.1021/acs.biochem.1c00489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
2
DasGupta S, Piccirilli JA. The Varkud Satellite Ribozyme: A Thirty-Year Journey through Biochemistry, Crystallography, and Computation. Acc Chem Res 2021;54:2591-2602. [PMID: 33974386 DOI: 10.1021/acs.accounts.1c00052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
3
Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme. Nat Chem 2020;12:193-201. [PMID: 31959957 PMCID: PMC7389185 DOI: 10.1038/s41557-019-0391-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 11/13/2019] [Indexed: 11/09/2022]
4
Harusawa S. Development of New Synthetic Reactions Using Hetero-Heavy Atoms and Their Application to Synthesis of Biofunctional Molecules. Chem Pharm Bull (Tokyo) 2020;68:1-33. [PMID: 31902899 DOI: 10.1248/cpb.c19-00636] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
5
Crystal structure of the Varkud satellite ribozyme. Nat Chem Biol 2015;11:840-6. [PMID: 26414446 PMCID: PMC4618023 DOI: 10.1038/nchembio.1929] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2015] [Accepted: 09/02/2015] [Indexed: 12/13/2022]
6
Singh V, Fedeles BI, Essigmann JM. Role of tautomerism in RNA biochemistry. RNA (NEW YORK, N.Y.) 2015;21:1-13. [PMID: 25516996 PMCID: PMC4274630 DOI: 10.1261/rna.048371.114] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
7
Bouchard P, Legault P. A remarkably stable kissing-loop interaction defines substrate recognition by the Neurospora Varkud Satellite ribozyme. RNA (NEW YORK, N.Y.) 2014;20:1451-64. [PMID: 25051972 PMCID: PMC4138328 DOI: 10.1261/rna.046144.114] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Accepted: 06/03/2014] [Indexed: 05/20/2023]
8
Ward WL, Plakos K, DeRose VJ. Nucleic acid catalysis: metals, nucleobases, and other cofactors. Chem Rev 2014;114:4318-42. [PMID: 24730975 PMCID: PMC4002065 DOI: 10.1021/cr400476k] [Citation(s) in RCA: 139] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Indexed: 12/17/2022]
9
Bonneau E, Legault P. NMR localization of divalent cations at the active site of the Neurospora VS ribozyme provides insights into RNA-metal-ion interactions. Biochemistry 2014;53:579-90. [PMID: 24364590 PMCID: PMC3906864 DOI: 10.1021/bi401484a] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
10
Wilson TJ, Lilley DM. A Mechanistic Comparison of the Varkud Satellite and Hairpin Ribozymes. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2013;120:93-121. [DOI: 10.1016/b978-0-12-381286-5.00003-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
11
Synthesis of novel tetrazole C5-linked C0- and C2-ribonucleoside phosphoramidites using MePOM and POM groups for probing RNA catalysis. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.08.082] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
12
Lilley DMJ. Mechanisms of RNA catalysis. Philos Trans R Soc Lond B Biol Sci 2012;366:2910-7. [PMID: 21930582 DOI: 10.1098/rstb.2011.0132] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
13
Lacroix-Labonté J, Girard N, Lemieux S, Legault P. Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture. Nucleic Acids Res 2011;40:2284-93. [PMID: 22086962 PMCID: PMC3299992 DOI: 10.1093/nar/gkr1018] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
14
Catalysis by the nucleolytic ribozymes. Biochem Soc Trans 2011;39:641-6. [PMID: 21428954 DOI: 10.1042/bst0390641] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
15
Tremblay R, Lemay JF, Blouin S, Mulhbacher J, Bonneau É, Legault P, Dupont P, Penedo JC, Lafontaine DA. Constitutive regulatory activity of an evolutionarily excluded riboswitch variant. J Biol Chem 2011;286:27406-15. [PMID: 21676871 DOI: 10.1074/jbc.m111.229047] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
16
Wilson TJ, Lilley DMJ. Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid-base catalysis? A critical assessment of available experimental data. RNA (NEW YORK, N.Y.) 2011;17:213-21. [PMID: 21173201 PMCID: PMC3022271 DOI: 10.1261/rna.2473711] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
17
Desjardins G, Bonneau E, Girard N, Boisbouvier J, Legault P. NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site. Nucleic Acids Res 2011;39:4427-37. [PMID: 21266483 PMCID: PMC3105416 DOI: 10.1093/nar/gkq1244] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
18
Harusawa S, Fujii K, Nishiura M, Araki L, Usami Y, Zhao ZY, M. J. Lilley D. Synthesis of Imidazole C1- and C3-Ribonucleoside Phosphoramidites for Probing Catalytic Mechanism in Ribozyme. HETEROCYCLES 2011. [DOI: 10.3987/com-11-12263] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
19
Blouin S, Chinnappan R, Lafontaine DA. Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation. Nucleic Acids Res 2010;39:3373-87. [PMID: 21169337 PMCID: PMC3082890 DOI: 10.1093/nar/gkq1247] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
20
ARAKI L, HARUSAWA S. Synthetic Studies of Imidazole C-Nucleosides toward Biofunctional Molecules. YAKUGAKU ZASSHI 2010;130:1707-24. [DOI: 10.1248/yakushi.130.1707] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
21
Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme. Proc Natl Acad Sci U S A 2010;107:11751-6. [PMID: 20547881 DOI: 10.1073/pnas.1004255107] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
22
Suydam IT, Levandoski SD, Strobel SA. Catalytic importance of a protonated adenosine in the hairpin ribozyme active site. Biochemistry 2010;49:3723-32. [PMID: 20373826 DOI: 10.1021/bi100234v] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Harusawa S, Araki L, Zhao ZY, M. J. Lilley D. Efficient Synthesis of 2’-O-Cyanoethylated Imidazole C-Ribonucleoside Phosphoramidite: A Practical Building Block for Probing the Catalytic Mechanism of Ribozymes. HETEROCYCLES 2010. [DOI: 10.3987/com-10-11978] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
24
Ouellet J, Byrne M, Lilley DMJ. Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes. RNA (NEW YORK, N.Y.) 2009;15:1822-6. [PMID: 19703941 PMCID: PMC2743049 DOI: 10.1261/rna.1759009] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
25
Means JA, Simson CM, Zhou S, Rachford AA, Rack JJ, Hines JV. Fluorescence probing of T box antiterminator RNA: insights into riboswitch discernment of the tRNA discriminator base. Biochem Biophys Res Commun 2009;389:616-21. [PMID: 19755116 DOI: 10.1016/j.bbrc.2009.09.037] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2009] [Accepted: 09/10/2009] [Indexed: 11/28/2022]
26
Araki L, Morita K, Yamaguchi M, Zhao ZY, Wilson TJ, Lilley DMJ, Harusawa S. Synthesis of Novel C4-Linked C2-Imidazole Ribonucleoside Phosphoramidite and Its Application to Probing the Catalytic Mechanism of a Ribozyme. J Org Chem 2009;74:2350-6. [DOI: 10.1021/jo802556s] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Suydam IT, Strobel SA. Nucleotide analog interference mapping. Methods Enzymol 2009;468:3-30. [PMID: 20946762 DOI: 10.1016/s0076-6879(09)68001-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
28
Suydam IT, Strobel SA. Fluorine substituted adenosines as probes of nucleobase protonation in functional RNAs. J Am Chem Soc 2008;130:13639-48. [PMID: 18803382 DOI: 10.1021/ja803336y] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
29
Pereira MJB, Nikolova EN, Hiley SL, Jaikaran D, Collins RA, Walter NG. Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. J Mol Biol 2008;382:496-509. [PMID: 18656481 DOI: 10.1016/j.jmb.2008.07.020] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2008] [Revised: 07/01/2008] [Accepted: 07/08/2008] [Indexed: 01/18/2023]
30
Jaikaran D, Smith MD, Mehdizadeh R, Olive J, Collins RA. An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method. RNA (NEW YORK, N.Y.) 2008;14:938-49. [PMID: 18356538 PMCID: PMC2327350 DOI: 10.1261/rna.936508] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
31
Heppell B, Lafontaine DA. Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot. Biochemistry 2008;47:1490-9. [PMID: 18205390 DOI: 10.1021/bi701164y] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
32
Ditzler MA, Alemán EA, Rueda D, Walter NG. Focus on function: single molecule RNA enzymology. Biopolymers 2008;87:302-16. [PMID: 17685395 DOI: 10.1002/bip.20819] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
33
Lilley DMJ. A chemo-genetic approach for the study of nucleobase participation in nucleolytic ribozymes. Biol Chem 2007;388:699-704. [PMID: 17570822 DOI: 10.1515/bc.2007.069] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
34
Blouin S, Lafontaine DA. A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. RNA (NEW YORK, N.Y.) 2007;13:1256-67. [PMID: 17585050 PMCID: PMC1924893 DOI: 10.1261/rna.560307] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
35
Wilson TJ, McLeod AC, Lilley DMJ. A guanine nucleobase important for catalysis by the VS ribozyme. EMBO J 2007;26:2489-500. [PMID: 17464286 PMCID: PMC1868910 DOI: 10.1038/sj.emboj.7601698] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2006] [Accepted: 04/02/2007] [Indexed: 11/08/2022]  Open
36
Smith MD, Collins RA. Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme. Proc Natl Acad Sci U S A 2007;104:5818-23. [PMID: 17389378 PMCID: PMC1851575 DOI: 10.1073/pnas.0608864104] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2006] [Indexed: 11/18/2022]  Open
37
Przybilski R, Hammann C. The hammerhead ribozyme structure brought in line. Chembiochem 2007;7:1641-4. [PMID: 16991176 DOI: 10.1002/cbic.200600312] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
38
Wilson TJ, Nahas M, Araki L, Harusawa S, Ha T, Lilley DMJ. RNA folding and the origins of catalytic activity in the hairpin ribozyme. Blood Cells Mol Dis 2006;38:8-14. [PMID: 17150385 DOI: 10.1016/j.bcmd.2006.10.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2006] [Accepted: 10/10/2006] [Indexed: 11/26/2022]
39
Lemay JF, Penedo JC, Tremblay R, Lilley DMJ, Lafontaine DA. Folding of the adenine riboswitch. ACTA ACUST UNITED AC 2006;13:857-68. [PMID: 16931335 DOI: 10.1016/j.chembiol.2006.06.010] [Citation(s) in RCA: 201] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2006] [Revised: 06/01/2006] [Accepted: 06/06/2006] [Indexed: 12/17/2022]
40
Wilson TJ, Ouellet J, Zhao ZY, Harusawa S, Araki L, Kurihara T, Lilley DMJ. Nucleobase catalysis in the hairpin ribozyme. RNA (NEW YORK, N.Y.) 2006;12:980-7. [PMID: 16601203 PMCID: PMC1464849 DOI: 10.1261/rna.11706] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
41
Roth A, Nahvi A, Lee M, Jona I, Breaker RR. Characteristics of the glmS ribozyme suggest only structural roles for divalent metal ions. RNA (NEW YORK, N.Y.) 2006;12:607-19. [PMID: 16484375 PMCID: PMC1421096 DOI: 10.1261/rna.2266506] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
42
Grajcar L, El Amri C, Ghomi M, Fermandjian S, Huteau V, Mandel R, Lecomte S, Baron MH. Assessment of adenyl residue reactivity within model nucleic acids by surface enhanced Raman spectroscopy. Biopolymers 2006;82:6-28. [PMID: 16425174 DOI: 10.1002/bip.20455] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
43
Synthesis of novel C4-linked imidazole ribonucleoside phosphoramidites for probing general acid and base catalysis in ribozyme. Tetrahedron 2005. [DOI: 10.1016/j.tet.2005.09.063] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
44
Wilson TJ, Nahas M, Ha T, Lilley DMJ. Folding and catalysis of the hairpin ribozyme. Biochem Soc Trans 2005;33:461-5. [PMID: 15916541 DOI: 10.1042/bst0330461] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
45
Strobel SA. Ribonucleic general acid. Nat Chem Biol 2005;1:5-6. [PMID: 16407982 DOI: 10.1038/nchembio0605-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
46
Zhao ZY, McLeod A, Harusawa S, Araki L, Yamaguchi M, Kurihara T, Lilley DMJ. Nucleobase participation in ribozyme catalysis. J Am Chem Soc 2005;127:5026-7. [PMID: 15810830 DOI: 10.1021/ja0502775] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
47
Kovacheva YS, Tzokov SB, Murray IA, Grasby JA. The role of phosphate groups in the VS ribozyme-substrate interaction. Nucleic Acids Res 2004;32:6240-50. [PMID: 15576350 PMCID: PMC535666 DOI: 10.1093/nar/gkh957] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
48
Araki L, Harusawa S, Yamaguchi M, Yonezawa S, Taniguchi N, Lilley DM, Zhao ZY, Kurihara T. Synthesis of C4-linked imidazole ribonucleoside phosphoramidite with pivaloyloxymethyl (POM) group. Tetrahedron Lett 2004. [DOI: 10.1016/j.tetlet.2004.01.132] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
49
McLeod AC, Lilley DMJ. Efficient, pH-dependent RNA ligation by the VS ribozyme in trans. Biochemistry 2004;43:1118-25. [PMID: 14744158 DOI: 10.1021/bi035790e] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
50
Lilley DMJ. The Varkud satellite ribozyme. RNA (NEW YORK, N.Y.) 2004;10:151-8. [PMID: 14730013 PMCID: PMC1370526 DOI: 10.1261/rna.5217104] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
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