Inhibition of host nucleic acid and protein synthesis by bacteriophage T4: Its relation to the physical and functional integrity of host chromosome

THYMINELESS MUTATION SITE ON ESCHERICHIA COLI CHROMOSOME

Kitsuji, Nobuo (Kanazawa University, Kanazawa, Ishikawa, Japan). Thymineless mutation site on Escherichia coli chromosome. J. Bacteriol. 87:802-808. 1964.-Kinetic studies of the recombinant formation in crosses between Escherichia coli K-12 Hfr H, Hfr C, or Hfr P10 as donor and F(-)W1177thy(-)his(-) as recipients showed that the time of appearance of thy(+)Sm(r) recombinants lay between that of xyl(+)Sm(r) and his(+)Sm(r), indicating that the thy gene lies between the xyl and his markers. Genetic analysis of recombinants of the Hfr C x W117thy(-)his(-) cross further indicated that the thy gene is located on the chromosome between the Sm marker and the his marker. In matings between seven independently isolated thymineless mutants of Hfr P10 and F(-)W1177thy(-)his(-), thy(+) recombinants of various recombination rates appeared. Thus, it was suggested that in E. coli K-12 the thy gene occupies some region between the Sm marker and the his marker on the chromosome, and that there are many thymineless mutation sites in it.

Gene product dsbA of bacteriophage T4 binds to late promoters and enhances late transcription

Gene product 33 of phage T4 is known to be essential in late transcription. Upstream from gene 33 and overlapping its 5' terminal sequence by 20 bp, we identified an open reading frame coding for a binding protein for double-stranded DNA (DsbA). Gene product DsbA is composed of 89 amino acid residues with a Mr of 10376 kDa. We purified this protein to homogeneity from over-expressing cells. Gel retardation assays reveal that it binds to DNA and footprint analyses disclose that it interacts preferentially with T4 late promoter regions. At the sites of binding the protein introduces nicks in double-stranded DNA. In vitro transcription assays performed with T4 late modified RNA polymerase on restriction fragments harbouring a T4 late promoter region prove that gene product DsbA enhances transcription from these promoter regions in the presence of gene product 33. Gene dsbA is distinct from gene das which maps close to this genomic region.

Bacteriophage T4 early promoter regions. Consensus sequences of promoters and ribosome-binding sites

Twenty-nine early promoters from bacteriophage T4 and 14 early promoters from bacteriophage T6 were isolated using vector M13HDL17, a promoterless derivative of M13mp8 carrying a linker sequence, the bacteriophage lambda-terminator tR1, and the lacZ' gene including part of its ribosome-binding site. The consensus sequence for the T4 promoters is: (sequence; see text). Ribosome-binding sites of T4 share the sequence: 5'...g.GGAga..aA.ATGAa.a...3' The consensus sequence of the T4 early promoter regions is significantly different in sequence and length from that of Escherichia coli promoters. Only one of the promoters detected with vector M13HDL17 resembled a typical bacterial promoter. The high information content raises the possibility that additional proteins recognize and contact nucleotides within the promoter region. All T4 early promoters also carry DNA sequences that could support DNA curving, a structural feature that might contribute to promoter recognition.

Inhibition of beta-galactosidase synthesis in Escherichia coli after infection with different DNA and RNA phages

Infection of Escherichia cooi with T1, T2r+, T3 and T4 phages leads to an immediate inhibition of beta-galactosidase synthesis. Similar results were obtained with the virulent mutant of phage lambda. The degree of inhibition of beta-galactosidase synthesis depends on the time delay between the addition of the inducer and the phage particles, and on the amount of phage DNA, which has penetrated into the host cell. RNA phage MS2 exhibited no inhibitory effect on enzyme synthesis.

The activity of Escherichia coli DNA-dependent RNA polymerase on DNA templates of different origin. The effect of cAMP

DNA isolated from different T phages served as a better template for the synthetic activity of unmodified Escherichia coli RNA polymerase in the in vitro system than did the host DNA. cAMP significantly stimulated the activity of such a preparation of RNA polymerase. The stimulation was more pronounced with the host DNA template than with phage DNA. However, the synthetic activity of Escherichia coli RNA polymerase was greater in the presence of cAMP than without it when phage DNA served as the template.

Degradation of Escherichia coli chromosome after infection by bacteriophage T4: role of bacteriophage gene D2a

Mutations in the D2a gene of bacteriophage T4 have recently been shown to result in the stabilization of cytosine-containing phage deoxyribonucleic acid (DNA) made after infection by phage gene 56 (deoxycytidine triphosphatase) mutants. In the experiments reported here, we investigate the role of the D2a gene in the degradation of the host chromosome. We find that if T4 endonuclease II, a product of the phage gene denA, is active, host chromosome degradation appears normal, regardless of the presence of the D2a gene product. However, if T4 endonuclease II is absent, a small amount of host chromosome degradation occurs, but only if the D2a product is present. These results are interpreted in terms of the hypothesis that D2a controls a nuclease which degrades cytosine-containing DNA. Neither D2a nor denA mutations affect the shut-off of host DNA synthesis.

Bacteriophage SP82G inhibition of an intracellular deoxyribonucleic acid inactivation process in Bacillus subtilis

The stability of SP82G bacteriophage deoxyribonucleic acid (DNA) after its uptake by competent Bacillus subtilis was examined by determining the ability of superinfecting phage particles to rescue genetic markers carried by the infective DNA. These experiments show that a DNA inactivation process within the cell is inhibited after infection of the cell by intact phage particles. The inhibition is maximally expressed 6 min after phage infection and is completely prevented by the addition of chloramphenicol at the time of infection. The protective effect of this function extends even to infective DNA which was present in the cell before the addition of intact phage. Continued protein synthesis does not appear to be a requirement for the maintenance of the inhibition. In an analogous situation, if infectious centers resulting from singly infecting phage particles are exposed to chloramphenicol shortly after the time of infection, an exponential decrease in the survival of infectious centers with time held in chloramphenicol is observed. If the addition of chloramphenicol is delayed until 6 min after infection, the infectious centers are resistant to chloramphenicol. The sensitivity of infectious centers treated with chloramphenicol at early times after infection is strongly dependent upon the multiplicity of infection and is consistent with a model of multiplicity reactivation. These results indicate that injected DNA is also susceptible to the intracellular inactivation process and suggest that the inhibition of this system is necessary for the successful establishment of an infectious center.

Mutants in a nonessential gene of bacteriophage T4 which are defective in the degradation of Escherichia coli deoxyribonucleic acid

Wild-type bacteriophage T4 was enriched for mutants which fail to degrade Escherichia coli deoxyribonucleic acid (DNA) by the following method. E. coli B was labeled in DNA at high specific activity with tritiated thymidine ((3)H-dT) and infected at low multiplicity with unmutagenized T4D. At 25 min after infection, the culture was lysed and stored. Wild-type T4 degrades the host DNA and incorporates the (3)H-dT into the DNA of progeny phage; mutants which fail to degrade the host DNA make unlabeled progeny phage. Wild-type progeny are eventually inactivated by tritium decay; mutants survive. Such mutants were found at a frequency of about 1% in the survivors. Eight mutants are in a single complementation group called denA located near gene 63. Four of these mutants which were examined in detail leave the bulk of the host DNA in large fragments. All eight mutants exhibit much less than normal T4 endonuclease II activity. The mutants produce somewhat fewer phage and less DNA than does wild-type T4.

Degradation of Escherichia coli B deoxyribonucleic acid after infection with deoxyribonucleic acid-defective amber mutants of bacteriophage T7

The degradation of bacterial deoxyribonucleic acid (DNA) was studied after infection of Escherichia coli B with DNA-negative amber mutants of bacteriophage T7. Degradation occurred in three stages. (i) Release of the DNA from a rapidly sedimenting cellular structure occurred between 5 and 6 min after infection. (ii) The DNA was cleaved endonucleolytically to fragments having a molecular weight of about 2 x 10(6) between 6 and 10 min after infection. (iii) These fragments of DNA were reduced to acid-soluble products between 7.5 and 15 min after infection. Stage 1 did not occur in the absence of the gene 1 product (ribonucleic acid polymerase sigma factor), stage 2 did not occur in the absence of the gene 3 product (phage T7-induced endonuclease), and stage 3 did not occur in the absence of the gene 6 product.

Bacteriophage infection: which end of the SP82G genome goes in first?

The transfer of deoxyribonucleic acid (DNA) from bacteriophage SP82G to its host may be halted by chilling but is affected little by chloramphenicol, actinomycin D, or cyanide. The order of entry of markers on the phage genome was determined by halting the transfer of DNA at intervals, removing the untransferred DNA by blending, and assaying for the presence of markers in the blended complexes. Markers on the phage genome are transferred in a linear, polar fashion consistent with the previously determined genetic and physical maps. Those markers concerned with early functions enter first, and the rate of transfer is temperature dependent.