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De Souza Coração AC, Gomes BA, Chyaromont AM, Lannes-Vieira ACP, Gomes APB, Lopes-Filho EAP, Leitão SG, Teixeira VL, De Paula JC. How the Ecology of Calcified Red Macroalgae is Investigated under a Chemical Approach? A Systematic Review and Bibliometric Study. J Chem Ecol 2024:10.1007/s10886-024-01525-7. [PMID: 38958678 DOI: 10.1007/s10886-024-01525-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 06/15/2024] [Accepted: 06/18/2024] [Indexed: 07/04/2024]
Abstract
Characteristics such as calcareous morphology and life cycle are used to understand the ecology of calcified rhodophytes. However, there is limited information regarding their chemical profiles and biological activities. Therefore, a systematic review (PRISMA) was conducted to assess the influence of the chemistry of calcareous rhodophytes on ecological interactions in the marine environment. The keywords used were: ["Chemical AND [Ecology OR Interaction OR Response OR Defense OR Effect OR Cue OR Mediated OR Induce]"] AND ["Red Seaweed" OR "Red Macroalgae" OR Rhodophy?] AND [Calcified OR Calcareous] in Science Direct, Scielo, PUBMED, Springer, Web of Science, and Scopus. Only English articles within the proposed theme were considered. Due to the low number of articles, another search was conducted with three classes and 16 genera. Finally, 67 articles were considered valid. Their titles, abstracts, and keywords were analyzed using IRaMuTeQ through factorial, hierarchical and similarity classification. Most of the studies used macroalgae thallus to evaluate chemical mediation while few tested crude extracts. Some substances were noted as sesquiterpene (6-hydroxy-isololiolide), fatty acid (heptadeca5,8,11-triene) and dibromomethane. The articles were divided into four classes: Herbivory, Competition, Settlement/Metamorphosis, and Epiphytism. Crustose calcareous algae were associated with studies of Settlement/Metamorphosis, while calcified algae were linked to herbivory. Thus, the importance of chemistry in the ecology of these algae is evident,and additional studies are needed to identify the substances responsible for ecological interactions. This study collected essential information on calcified red algae, whose diversity appears to be highly vulnerable to the harmful impacts of ongoing climate change.
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Affiliation(s)
- Amanda Cunha De Souza Coração
- Programa de Pós-Graduação em Ciências Biológicas (Biodiversidade Neotropical), Centro de Ciências Biológicas e da Saúde, Universidade Federal do Estado do Rio de Janeiro, Avenue Pasteur, 458, Rio de Janeiro, Urca, CEP: 22.290-255, Brazil.
| | - Brendo Araujo Gomes
- Programa de Pós-Graduação em Biotecnologia Vegetal e Bioprocessos, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Avenue Carlos Chagas Filho, 373, Rio de Janeiro, CEP: 21941-590, Brazil
| | - Amanda Mendonça Chyaromont
- Centro de Ciências Biológicas e da Saúde, Instituto de Biociências, Universidade Federal do Estado do Rio de Janeiro, Avenue Pasteur, 458, Rio de Janeiro, Urca, CEP: 22.290-255, Brazil
| | - Ana Christina Pires Lannes-Vieira
- Programa de Pós-Graduação em Ciências Biológicas (Biodiversidade Neotropical), Centro de Ciências Biológicas e da Saúde, Universidade Federal do Estado do Rio de Janeiro, Avenue Pasteur, 458, Rio de Janeiro, Urca, CEP: 22.290-255, Brazil
| | - Ana Prya Bartolo Gomes
- Centro de Ciências Biológicas e da Saúde, Instituto de Biociências, Universidade Federal do Estado do Rio de Janeiro, Avenue Pasteur, 458, Rio de Janeiro, Urca, CEP: 22.290-255, Brazil
| | - Erick Alves Pereira Lopes-Filho
- Programa de Pós-Graduação em Ciências Biológicas (Botânica), Museu Nacional, Universidade Federal do Rio de Janeiro, , Quinta da Boa Vista s/n, Horto Botânico, Rio de Janeiro, CEP: 20.940-040, Brazil
| | - Suzana Guimarães Leitão
- Faculdade de Farmácia, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Avenue Carlos Chagas Filho, 373, Rio de Janeiro, CEP: 21941-590, Brazil
| | - Valéria Laneuville Teixeira
- Instituto de Biologia, Universidade Federal Fluminense, Professor Marcos Waldemar de Freitas Reis Street, s/n, Niterói, Rio de Janeiro, CEP: 24.210-201, Brazil
| | - Joel Campos De Paula
- Programa de Pós-Graduação em Ciências Biológicas (Biodiversidade Neotropical), Centro de Ciências Biológicas e da Saúde, Universidade Federal do Estado do Rio de Janeiro, Avenue Pasteur, 458, Rio de Janeiro, Urca, CEP: 22.290-255, Brazil
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Lavecchia A, Fosso B, Engelen AH, Borin S, Manzari C, Picardi E, Pesole G, Placido A. Macroalgal microbiomes unveil a valuable genetic resource for halogen metabolism. MICROBIOME 2024; 12:47. [PMID: 38454513 PMCID: PMC10919026 DOI: 10.1186/s40168-023-01740-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 12/18/2023] [Indexed: 03/09/2024]
Abstract
BACKGROUND Macroalgae, especially reds (Rhodophyta Division) and browns (Phaeophyta Division), are known for producing various halogenated compounds. Yet, the reasons underlying their production and the fate of these metabolites remain largely unknown. Some theories suggest their potential antimicrobial activity and involvement in interactions between macroalgae and prokaryotes. However, detailed investigations are currently missing on how the genetic information of prokaryotic communities associated with macroalgae may influence the fate of organohalogenated molecules. RESULTS To address this challenge, we created a specialized dataset containing 161 enzymes, each with a complete enzyme commission number, known to be involved in halogen metabolism. This dataset served as a reference to annotate the corresponding genes encoded in both the metagenomic contigs and 98 metagenome-assembled genomes (MAGs) obtained from the microbiome of 2 red (Sphaerococcus coronopifolius and Asparagopsis taxiformis) and 1 brown (Halopteris scoparia) macroalgae. We detected many dehalogenation-related genes, particularly those with hydrolytic functions, suggesting their potential involvement in the degradation of a wide spectrum of halocarbons and haloaromatic molecules, including anthropogenic compounds. We uncovered an array of degradative gene functions within MAGs, spanning various bacterial orders such as Rhodobacterales, Rhizobiales, Caulobacterales, Geminicoccales, Sphingomonadales, Granulosicoccales, Microtrichales, and Pseudomonadales. Less abundant than degradative functions, we also uncovered genes associated with the biosynthesis of halogenated antimicrobial compounds and metabolites. CONCLUSION The functional data provided here contribute to understanding the still largely unexplored role of unknown prokaryotes. These findings support the hypothesis that macroalgae function as holobionts, where the metabolism of halogenated compounds might play a role in symbiogenesis and act as a possible defense mechanism against environmental chemical stressors. Furthermore, bacterial groups, previously never connected with organohalogen metabolism, e.g., Caulobacterales, Geminicoccales, Granulosicoccales, and Microtrichales, functionally characterized through MAGs reconstruction, revealed a biotechnologically relevant gene content, useful in synthetic biology, and bioprospecting applications. Video Abstract.
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Affiliation(s)
- Anna Lavecchia
- Department of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", Via Orabona 4, Bari, 70124, Italy
| | - Bruno Fosso
- Department of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", Via Orabona 4, Bari, 70124, Italy
| | - Aschwin H Engelen
- Center of Marine Sciences (CCMar), University of Algarve, Campus Gambelas, Faro, 8005-139, Portugal
| | - Sara Borin
- Department of Food, Environmental and Nutritional Sciences, University of Milan, Via Celoria 2, Milan, 20133, Italy
| | - Caterina Manzari
- Department of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", Via Orabona 4, Bari, 70124, Italy
| | - Ernesto Picardi
- Department of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", Via Orabona 4, Bari, 70124, Italy
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council of Italy, Via Giovanni Amendola, Bari, 122/O, 70126, Italy
| | - Graziano Pesole
- Department of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", Via Orabona 4, Bari, 70124, Italy
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council of Italy, Via Giovanni Amendola, Bari, 122/O, 70126, Italy
| | - Antonio Placido
- Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council of Italy, Via Giovanni Amendola, Bari, 122/O, 70126, Italy.
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Olander A, Raina JB, Lawson CA, Bartels N, Ueland M, Suggett DJ. Distinct emissions of biogenic volatile organic compounds from temperate benthic taxa. Metabolomics 2023; 20:9. [PMID: 38129550 DOI: 10.1007/s11306-023-02070-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 11/28/2023] [Indexed: 12/23/2023]
Abstract
INTRODUCTION Biogenic volatile organic compounds (BVOCs) are emitted by all organisms as intermediate or end-products of metabolic processes. Individual BVOCs perform important physiological, ecological and climatic functions, and collectively constitute the volatilome-which can be reflective of organism taxonomy and health. Although BVOC emissions of tropical benthic reef taxa have recently been the focus of multiple studies, emissions derived from their temperate counterparts have never been characterised. OBJECTIVES Characterise the volatilomes of key competitors for benthic space among Australian temperate reefs. METHODS Six fragments/fronds of a temperate coral (Plesiastrea versipora) and a macroalga (Ecklonia radiata) from a Sydney reef site were placed within modified incubation chambers filled with seawater. Organism-produced BVOCs were captured on thermal desorption tubes using a purge-and-trap methodology, and were then analysed using GC × GC - TOFMS and multivariate tests. RESULTS Analysis detected 55 and 63 BVOCs from P. versipora and E. radiata respectively, with 30 of these common between species. Each taxon was characterised by a similar relative composition of chemical classes within their volatilomes. However, 14 and 10 volatiles were distinctly emitted by either E. radiata or P. versipora respectively, including the halogenated compounds iodomethane, tribromomethane, carbon tetrachloride and trichloromonofluoromethane. While macroalgal cover was 3.7 times greater than coral cover at the sampling site, P. versipora produced on average 17 times more BVOCs per cm2 of live tissue, resulting in an estimated contribution to local BVOC emission that was 4.7 times higher than E. radiata. CONCLUSION Shifts in benthic community composition could disproportionately impact local marine chemistry and affect how ecosystems contribute to broader BVOC emissions.
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Affiliation(s)
- Axel Olander
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia.
| | - Jean-Baptiste Raina
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
| | - Caitlin A Lawson
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
- School of Environmental and Life Sciences, University of Newcastle, Newcastle, NSW, Australia
| | - Natasha Bartels
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
| | - Maiken Ueland
- Centre for Forensic Science, University of Technology Sydney, Broadway, NSW, 2007, Australia
| | - David J Suggett
- Climate Change Cluster, University of Technology Sydney, Broadway, NSW, 2007, Australia
- KAUST Reefscape Restoration Initiative (KRRI) and Red Sea Research Center (RSRC), King Abdullah University of Science and Technology, 23955, Thuwal, Saudi Arabia
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Zhang M, Li P, Wang Q, Huang L, Lin K. Production of Polyhalogenated Carbazoles in Marine Red Alga Corallina officinalis: A Possible Natural Source. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:6673-6681. [PMID: 37053377 DOI: 10.1021/acs.est.3c00311] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Polyhalogenated carbazoles (PHCZs) have been increasingly detected in the environment as a result of anthropogenic and natural origin. However, it is unclear how PHCZs are naturally produced. In this study, the formation of PHCZs from bromoperoxidase (BPO)-mediated halogenation of carbazole was investigated. A total of six PHCZs were identified in reactions under different incubation conditions. The presence of Br- significantly influenced the formation of PHCZs. The products were first dominated by 3-bromocarbazole and then 3,6-dibromocarbazole as the reactions proceeded. Both bromo- and chlorocarbazoles were identified in the incubations with trace Br-, suggesting the co-occurrence of BPO-catalyzed bromination and chlorination. However, BPO-catalyzed chlorination of carbazole was much weaker than that of bromination. The formation of PHCZs could be attributable to the halogenation of carbazole by reactive halogen species generated from BPO-catalyzed oxidation of Br- and Cl- by H2O2. The halogenation was found to follow a successive substitution order of C-3, C-6, and C-1 on the carbazole ring, forming 3-, 3,6-, and 1,3,6-isomers. Similar to the incubation experiments, six PHCZs were for the first time detected in red algal samples collected from the South China Sea, China, suggesting the biogenesis of PHCZs in marine red algae. Given the widespread distribution of red algae in the marine environment, BPO-catalyzed halogenation of carbazole may be a natural origin for PHCZs.
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Affiliation(s)
- Meng Zhang
- Fujian Provincial Key Laboratory for Coast Ecology and Environmental Studies, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Peng Li
- Fujian Provincial Key Laboratory for Coast Ecology and Environmental Studies, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Qifang Wang
- Fujian Provincial Key Laboratory for Coast Ecology and Environmental Studies, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Lingfeng Huang
- Fujian Provincial Key Laboratory for Coast Ecology and Environmental Studies, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Kunde Lin
- Fujian Provincial Key Laboratory for Coast Ecology and Environmental Studies, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China
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Rubiño S, Peteiro C, Aymerich T, Hortós M. Brown Macroalgae (Phaeophyceae): A Valuable Reservoir of Antimicrobial Compounds on Northern Coast of Spain. Mar Drugs 2022; 20:775. [PMID: 36547922 PMCID: PMC9787464 DOI: 10.3390/md20120775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/02/2022] [Accepted: 12/09/2022] [Indexed: 12/15/2022] Open
Abstract
The search for new sources of antimicrobial compounds has become an urgent need, due to the threat that the spread of bacterial resistance represents for global health and food safety. Brown macroalgae have been proposed as a great reservoir in the search for novel antimicrobial compounds. In this study, mid-polarity extracts were performed with a selection of 20 brown macroalgae species from northern Spain. The total polyphenol, carbohydrate and protein contents were quantified by spectrophotometry. The volatile organic compounds (VOCs) of whole macroalgae were also studied as a biomarker of their metabolic state in the representative species of the tested families by gas chromatography-mass spectrometry (GC-MS). The antimicrobial potential of the extracts was assessed by a disk diffusion assay against 20 target bacteria and further determinations of the minimum inhibitory (MIC) and minimum bactericidal concentrations (MBC) were performed by a microdilution assay for the active extracts. Ericaria selaginoides, Bifurcaria bifurcata and Dictyota dichotoma showed an antimicrobial effect against six Gram-positive strains: Bacillus cereus, Bacillus subtilis, Geobacillus stearothermophilus, Listeria monocytogenes, Staphylococcus aureus and Staphylococcus haemolyticus. The phenolic content was generally higher in the extracts that showed antimicrobial activity, followed by carbohydrates and low contents of proteins. The results obtained in this study reveal the potential of brown macroalgae as a promising alternative source of antimicrobial compounds as functional ingredients for the application in industrial fields.
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Affiliation(s)
- Susana Rubiño
- Institute of Agrifood Research and Technology (IRTA), Food Safety and Functionality Program, Finca Camps i Armet s/n, 17121 Girona, Spain
| | - César Peteiro
- Oceanographic Centre of Santander (COST-IEO), Spanish Institute of Oceanography of the Spanish, National Research Council (IEO, CSIC), Marine Culture Units “El Bocal”, Seaweeds Unit, Barrio Corbanera s/n., 39012 Santander, Spain
| | - Teresa Aymerich
- Institute of Agrifood Research and Technology (IRTA), Food Safety and Functionality Program, Finca Camps i Armet s/n, 17121 Girona, Spain
| | - Maria Hortós
- Institute of Agrifood Research and Technology (IRTA), Food Safety and Functionality Program, Finca Camps i Armet s/n, 17121 Girona, Spain
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Keng FSL, Phang SM, Abd Rahman N, Yeong HY, Malin G, Leedham Elvidge E, Sturges W. Halocarbon emissions by selected tropical seaweeds exposed to different temperatures. PHYTOCHEMISTRY 2021; 190:112869. [PMID: 34274551 DOI: 10.1016/j.phytochem.2021.112869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 06/30/2021] [Accepted: 07/02/2021] [Indexed: 06/13/2023]
Abstract
Four tropical seaweeds, Gracilaria manilaensis Yamamoto & Trono, Ulva reticulata Forsskål, Kappaphycus alvarezii (Doty) L.M.Liao and Turbinaria conoides (J.Agardh) Kützing, collected from various habitats throughout Malaysia, were subjected to temperatures of 40, 35, 30, 25 and 20 °C in the laboratory. An exposure range of 21-38 °C is reported for Malaysian waters. The effect of the temperature exposures on the halocarbon emissions of the seaweeds were determined 4 and 28 h after treatment. The emission rates for a suite of six halocarbons commonly emitted by seaweeds, bromoform (CHBr3), dibromomethane (CH2Br2), diiodomethane (CH2I2), iodomethane (CH3I), dibromochloromethane (CHBr2Cl) and dichlorobromomethane (CHBrCl2), were measured using a cryogenic purge-and-trap sample preparation system coupled to a gas chromatography-mass spectrometry. The emission rate of CHBr3 was the highest of the six halocarbons for all the seaweeds under all the temperatures tested, followed by CH2Br2, and CH2I2. The emission rates were affected by temperature change and exposure duration, but overall responses were unique to each seaweed species. Larger decreases in the emissions of CHBr3, CH2Br2, CH2I2 and CHBr2Cl were found for K. alvarezii and T. conoides after 4 h at 40 °C. In both cases there was a >90% (p < 0.05) reduction in the Fv/Fm value suggesting that photosynthetic actitivity was severely compromised. After a 28 h exposure period, strong negative correlations (r = -0.69 to -0.95; p < 0.01) were observed between temperature and the emission of CHBr3, CH2Br2 and CH2I2 for U. reticulata, K. alvarezii and T. conoides. This suggests a potential decrease in the halocarbon emissions from these tropical seaweeds, especially where the temperature increase is a prolonged event. Strong correlations were also seen between seaweed chlorophyll and carotenoid pigment contents and the emission rates for CHBr3, CH2Br2 and CH2I2 (r = 0.48 to 0.96 and -0.49 to -0.96; p < 0.05). These results suggest that the regulation of halocarbon production versus reactive oxygen species production in seaweeds is an area worthy of further exploration.
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Affiliation(s)
- Fiona Seh-Lin Keng
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, 50603, Kuala Lumpur, Malaysia; Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Siew-Moi Phang
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, 50603, Kuala Lumpur, Malaysia; Faculty of Applied Sciences, UCSI University, Cheras, 56000, Kuala Lumpur, Malaysia.
| | - Noorsaadah Abd Rahman
- Department of Chemistry, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Hui-Yin Yeong
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Gill Malin
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom
| | - Emma Leedham Elvidge
- Faculty of Science, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom
| | - William Sturges
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, United Kingdom
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Sun YY, Zhou J, Han X, Zhang NS, Yang ZX, Zhang X. Several natural products isolated from a red alga Gracilaria lemaneiformis and its evaluation of antialgal activity against six common red tide microalgae. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:22409-22426. [PMID: 33420683 DOI: 10.1007/s11356-020-11755-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 11/18/2020] [Indexed: 06/12/2023]
Abstract
The ethanol extracts of Gracilaria lemaneiformis that have inhibitory effects on Karenia mikimotoi and Skeletonema costatum were separated by liquid-liquid extraction using different polar solvents into five fractions with antialgal activities (petroleum ether, chloroform, ethyl acetate, n-butanol, and water-soluble fractions). These fractions were chromatographed on silica gel to give, after repeated preparative thin-layer chromatography (PTLC) purification processes, 1-β-D-ribofuranosyluracil (1), 3-hydroxymethyl-pyrrolopiperazine-2,5-dione (2), benzene-1,2-propanoic acid (3), 1-O-palmitoyl-2-O-palmitoleoyl-3-O-β-D-galactopyranosyl glycerol (4), 7-oxabicyclo[4.1.0]-heptan-3-ol (5), linoleic acid (6), 3,4-dimethoxy-6-(methoxymethyl)-tetrahydro-2H-pyran-2,5-diol (7), and 3,7,11,16-tetramethyl -2-heptadecen-1-ol (8). Five of them, natural products 1, 2, 5, 7, and 8, were isolated from Gracilaria lemaneiformis for the first time, and three natural products (3, 5, and 8) were isolated from marine macroalgae for the first time. Among them, natural products (1, 2, 3, 4, and 6) showed the most obvious inhibition activities to the growth of Karenia mikimotoi and Skeletonema costatum at the concentration of 80 μg/mL. Therefore, antialgal activities of these five natural products against Amphidinium carterae, Heterosigma akashiwo, Karenia mikimotoi, Phaeocystis globosa, Prorocentrum donghaiense, and Skeletonema costatum were further tested at different concentrations (0.4, 2, 10, and 50 μg/mL). This was the first report of antialgal activities of five natural products (1, 2, 3, 4, and 6) to these six red tide microalgae. They showed significantly selective antialgal activities against all tested red tide microalgae. At the concentration of 50 μg/mL, the growth of Amphidinium carterae, Heterosigma akashiwo, Karenia mikimotoi, and Phaeocystis globosa was obviously inhibited; for Karenia mikimotoi, natural products 1, 2, and 6 have significant antialgal activities; the growth inhibition of Skeletonema costatum that was exposed to natural products 1, 3, and 4 was remarkable. Furthermore, by analyzing and comparing EC50-96 h values, it has been determined that natural product 3 (natural product 4) showed the superior application potential than potassium dichromate and some reported natural products (such as gossonorol isolated from Porphyra yezoensis, trehalose purified from Ulva pertusa) as a characteristic antialgal agent against Amphidinium carterae (Phaeocystis globosa). In addition, natural products 1 and 3 also showed good superiority than some reported natural products in inhibiting Skeletonema costatum; however, it was a pity that they were inferior to potassium dichromate in the inhibiting this red tide microalgae. Taken together, it is not hard to conclude that Gracilaria lemaneiformis was a good source of natural products with antialgal activities against some red tide microalgae.
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Affiliation(s)
- Ying-Ying Sun
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, 222005, China.
- Jiangsu Key Laboratory of Marine Bioresources and Eco-environment, Jiangsu Ocean University, Lianyungang, 222005, China.
- Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, 222005, China.
| | - Jing Zhou
- Lianyungang of Products Quality Supervision and Inspection, Lianyungang, 222006, China
| | - Xiu Han
- Lianyungang of Products Quality Supervision and Inspection, Lianyungang, 222006, China
| | - Nai-Sheng Zhang
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, 222005, China
| | - Zi-Xuan Yang
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, 222005, China
| | - Xin Zhang
- Jiangsu Key Laboratory of Marine Biotechnology, Jiangsu Ocean University, Lianyungang, 222005, China
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Lawson CA, Raina JB, Deschaseaux E, Hrebien V, Possell M, Seymour JR, Suggett DJ. Heat stress decreases the diversity, abundance and functional potential of coral gas emissions. GLOBAL CHANGE BIOLOGY 2021; 27:879-891. [PMID: 33253484 DOI: 10.1111/gcb.15446] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 10/13/2020] [Accepted: 10/29/2020] [Indexed: 06/12/2023]
Abstract
Terrestrial ecosystems emit large quantities of biogenic volatile organic compounds (BVOCs), many of which play important roles in abiotic stress responses, pathogen and grazing defences, inter- and intra-species communications, and climate regulation. Conversely, comparatively little is known about the diversity and functional potential of BVOCs produced in the marine environment, especially in highly productive coral reefs. Here we describe the first 'volatilomes' of two common reef-building corals, Acropora intermedia and Pocillopora damicornis, and how the functional potential of their gaseous emissions is altered by heat stress events that are driving rapid deterioration of coral reef ecosystems worldwide. A total of 87 BVOCs were detected from the two species and the chemical richness of both coral volatilomes-particularly the chemical classes of alkanes and carboxylic acids-decreased during heat stress by 41% and 62% in A. intermedia and P. damicornis, respectively. Across both coral species, the abundance of individual compounds changed significantly during heat stress, with the majority (>86%) significantly decreasing compared to control conditions. Additionally, almost 60% of the coral volatilome (or 52 BVOCs) could be assigned to four key functional groups based on their activities in other species or systems, including stress response, chemical signalling, climate regulation and antimicrobial activity. The total number of compounds assigned to these functions decreased significantly under heat stress for both A. intermedia (by 35%) and P. damicornis (by 64%), with most dramatic losses found for climatically active BVOCs in P. damicornis and antimicrobial BVOCs in A. intermedia. Together, our observations suggest that future heat stress events predicted for coral reefs will reduce the diversity, quantity and functional potential of BVOCs emitted by reef-building corals, potentially further compromising the healthy functioning of these ecosystems.
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Affiliation(s)
- Caitlin A Lawson
- Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia
- School of Environment and Life Sciences, University of Newcastle, Ourimbah, NSW, Australia
| | - Jean-Baptiste Raina
- Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia
| | - Elisabeth Deschaseaux
- Centre for Coastal Biogeochemistry, Southern Cross University, Lismore, NSW, Australia
| | - Victoria Hrebien
- Centre for Coastal Biogeochemistry, Southern Cross University, Lismore, NSW, Australia
| | - Malcolm Possell
- School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia
| | - Justin R Seymour
- Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia
| | - David J Suggett
- Climate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia
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Li H, Monteiro C, Heinrich S, Bartsch I, Valentin K, Harms L, Glöckner G, Corre E, Bischof K. Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics. PHYSIOLOGIA PLANTARUM 2020; 168:5-26. [PMID: 31267544 DOI: 10.1111/ppl.13009] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 05/31/2019] [Accepted: 06/27/2019] [Indexed: 06/09/2023]
Abstract
The Arctic region is currently facing substantial environmental changes due to global warming. Melting glaciers cause reduced salinity environments in coastal Arctic habitats, which may be stressful for kelp beds. To investigate the responses of the kelp Saccharina latissima to the warming Arctic, we studied the transcriptomic changes of S. latissima from Kongsfjorden (Svalbard, Norway) over a 24-hour exposure to two salinities (Absolute Salinity [SA ] 20 and 30) after a 7-day pre-acclimation at three temperatures (0, 8 and 15°C). In addition, corresponding physiological data were assessed during an 11-days salinity/temperature experiment. Growth and maximal quantum yield for photosystem II fluorescence were positively affected by increased temperature during acclimation, whereas hyposalinity caused negative effects at the last day of treatment. In contrast, hyposalinity induced marked changes on the transcriptomic level. Compared to the control (8°C - SA 30), the 8°C - SA 20 exhibited the highest number of differentially expressed genes (DEGs), followed by the 0°C - SA 20. Comparisons indicate that S. latissima tends to convert its energy from primary metabolism (e.g. photosynthesis) to antioxidant activity under hyposaline stress. The increase in physiological performance at 15°C shows that S. latissima in the Arctic region can adjust and might even benefit from increased temperatures. However, in Arctic fjord environments its performance might become impaired by decreased salinity as a result of ice melting.
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Affiliation(s)
- Huiru Li
- Fisheries College, Ocean University of China, Qingdao, 266003, China
- Marine Botany, Faculty Biology/Chemistry, University of Bremen, Bremen, 28359, Germany
| | - Cátia Monteiro
- Marine Botany, Faculty Biology/Chemistry, University of Bremen, Bremen, 28359, Germany
- Station Biologique de Roscoff, plateforme ABiMS, CNRS: FR2424, Sorbonne Université (UPMC), Roscoff, 29680, France
- Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff, Roscoff, 29680, France
| | - Sandra Heinrich
- Molecular Plant Genetics, Institute for Plant Science and Microbiology, University of Hamburg, Hamburg, 22609, Germany
| | - Inka Bartsch
- Alfred-Wegener-Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, 27570, Germany
| | - Klaus Valentin
- Alfred-Wegener-Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, 27570, Germany
| | - Lars Harms
- Alfred-Wegener-Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, 27570, Germany
| | - Gernot Glöckner
- Institute of Biochemistry I, Medical Faculty, University of Cologne, Cologne, 50931, Germany
| | - Erwan Corre
- Station Biologique de Roscoff, plateforme ABiMS, CNRS: FR2424, Sorbonne Université (UPMC), Roscoff, 29680, France
| | - Kai Bischof
- Marine Botany, Faculty Biology/Chemistry, University of Bremen, Bremen, 28359, Germany
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10
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Lawson CA, Possell M, Seymour JR, Raina JB, Suggett DJ. Coral endosymbionts (Symbiodiniaceae) emit species-specific volatilomes that shift when exposed to thermal stress. Sci Rep 2019; 9:17395. [PMID: 31758008 PMCID: PMC6874547 DOI: 10.1038/s41598-019-53552-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Accepted: 11/01/2019] [Indexed: 12/27/2022] Open
Abstract
Biogenic volatile organic compounds (BVOCs) influence organism fitness by promoting stress resistance and regulating trophic interactions. Studies examining BVOC emissions have predominantly focussed on terrestrial ecosystems and atmospheric chemistry - surprisingly, highly productive marine ecosystems remain largely overlooked. Here we examined the volatilome (total BVOCs) of the microalgal endosymbionts of reef invertebrates, Symbiodiniaceae. We used GC-MS to characterise five species (Symbiodinium linucheae, Breviolum psygmophilum, Durusdinium trenchii, Effrenium voratum, Fugacium kawagutii) under steady-state growth. A diverse range of 32 BVOCs were detected (from 12 in D. trenchii to 27 in S. linucheae) with halogenated hydrocarbons, alkanes and esters the most common chemical functional groups. A thermal stress experiment on thermally-sensitive Cladocopium goreaui and thermally-tolerant D. trenchii significantly affected the volatilomes of both species. More BVOCs were detected in D. trenchii following thermal stress (32 °C), while fewer BVOCs were recorded in stressed C. goreaui. The onset of stress caused dramatic increases of dimethyl-disulfide (98.52%) in C. goreaui and nonanoic acid (99.85%) in D. trenchii. This first volatilome analysis of Symbiodiniaceae reveals that both species-specificity and environmental factors govern the composition of BVOC emissions among the Symbiodiniaceae, which potentially have, as yet unexplored, physiological and ecological importance in shaping coral reef community functioning.
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Affiliation(s)
- Caitlin A Lawson
- Climate Change Cluster (C3), University of Technology Sydney, Sydney, Australia.
| | - Malcolm Possell
- School of Life and Environmental Sciences, University of Sydney, Sydney, Australia
| | - Justin R Seymour
- Climate Change Cluster (C3), University of Technology Sydney, Sydney, Australia
| | - Jean-Baptiste Raina
- Climate Change Cluster (C3), University of Technology Sydney, Sydney, Australia
| | - David J Suggett
- Climate Change Cluster (C3), University of Technology Sydney, Sydney, Australia
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11
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Zuo Z. Why Algae Release Volatile Organic Compounds-The Emission and Roles. Front Microbiol 2019; 10:491. [PMID: 30915062 PMCID: PMC6423058 DOI: 10.3389/fmicb.2019.00491] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 02/26/2019] [Indexed: 02/06/2023] Open
Abstract
A wide spectrum of volatile organic compounds (VOCs) are released from algae in aquatic ecosystems. Environmental factors such as light, temperature, nutrition conditions and abiotic stresses affect their emission. These VOCs can enhance the resistance to abiotic stresses, transfer information between algae, play allelopathic roles, and protect against predators. For homogeneous algae, the VOCs released from algal cells under stress conditions transfer stress information to other cells, and induce the acceptors to make a preparation for the upcoming stresses. For heterogeneous algae and aquatic macrophytes, the VOCs show allelopathic effects on the heterogeneous neighbors, which benefit to the emitter growth and competing for nutrients. In cyanobacterial VOCs, some compounds such as limonene, eucalyptol, β-cyclocitral, α-ionone, β-ionone and geranylacetone have been detected as the allelopathic agents. In addition, VOCs can protect the emitters from predation by predators. It can be speculated that the emission of VOCs is critical for algae coping with the complicated and changeable aquatic ecosystems.
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Affiliation(s)
- Zhaojiang Zuo
- School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
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12
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Atashgahi S, Liebensteiner MG, Janssen DB, Smidt H, Stams AJM, Sipkema D. Microbial Synthesis and Transformation of Inorganic and Organic Chlorine Compounds. Front Microbiol 2018; 9:3079. [PMID: 30619161 PMCID: PMC6299022 DOI: 10.3389/fmicb.2018.03079] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Accepted: 11/29/2018] [Indexed: 12/26/2022] Open
Abstract
Organic and inorganic chlorine compounds are formed by a broad range of natural geochemical, photochemical and biological processes. In addition, chlorine compounds are produced in large quantities for industrial, agricultural and pharmaceutical purposes, which has led to widespread environmental pollution. Abiotic transformations and microbial metabolism of inorganic and organic chlorine compounds combined with human activities constitute the chlorine cycle on Earth. Naturally occurring organochlorines compounds are synthesized and transformed by diverse groups of (micro)organisms in the presence or absence of oxygen. In turn, anthropogenic chlorine contaminants may be degraded under natural or stimulated conditions. Here, we review phylogeny, biochemistry and ecology of microorganisms mediating chlorination and dechlorination processes. In addition, the co-occurrence and potential interdependency of catabolic and anabolic transformations of natural and synthetic chlorine compounds are discussed for selected microorganisms and particular ecosystems.
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Affiliation(s)
- Siavash Atashgahi
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands
| | | | - Dick B. Janssen
- Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, Netherlands
| | - Hauke Smidt
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands
| | - Alfons J. M. Stams
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands
- Centre of Biological Engineering, University of Minho, Braga, Portugal
| | - Detmer Sipkema
- Laboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands
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13
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Porzio L, Buia MC, Ferretti V, Lorenti M, Rossi M, Trifuoggi M, Vergara A, Arena C. Photosynthesis and mineralogy of Jania rubens at low pH/high pCO 2: A future perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 628-629:375-383. [PMID: 29448022 DOI: 10.1016/j.scitotenv.2018.02.065] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2017] [Revised: 02/06/2018] [Accepted: 02/06/2018] [Indexed: 06/08/2023]
Abstract
Corallinales (Rhodophyta) are high Mg-calcite macroalgae and are considered among the most vulnerable organisms to ocean acidification (OA). These sensitive species play fundamental roles in coastal systems as food source and settlement promoters as well as being involved in reef stabilization, and water carbonate balance. At present only a few studies are focused on erect calcifying macroalgae under low pH/high pCO2 and the contrasting results make difficult to predict the ecological consequences of the OA on the coralline algae. In this paper the physiological reasons behind the resistance of Jania rubens, one of the most common calcareous species, to changing ocean pH are analysed. In particular, we studied the photosynthetic and mineralogical response of J. rubens after a three-week transplant in a natural CO2 vent system. The overall results showed that J. rubens could be able to survive under predicted pH conditions even though with a reduced fitness; nevertheless physiological limits prevent the growth and survival of the species at pH6.7. At low pH (i.e. pH7.5), the maximum and effective PSII efficiency decreased even if the increase of Rubisco expression suggests a compensation effort of the species to cope with the decreased light-driven products. In these circumstances, a pH-driven bleaching phenomenon was also observed. Even though the photosynthesis decreased at low pH, J. rubens maintained unchanged the mineralogical composition and the carbonate content in the cell wall, suggesting that the calcification process may also have a physiological relevance in addition to a structural and/or a protective role. Further studies will confirm the hypotheses on the functional and evolutionary role of the calcification process in coralline algae and on the ecological consequences of the community composition changes under high pCO2 oceans.
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Affiliation(s)
- Lucia Porzio
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Center of Benthic Ecology-Villa Dohrn, Punta S. Pietro, 80077 Ischia, Naples, Italy; Department of Biology, University of Naples Federico II, Via Cinthia, 80126 Naples, Italy.
| | - Maria Cristina Buia
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Center of Benthic Ecology-Villa Dohrn, Punta S. Pietro, 80077 Ischia, Naples, Italy
| | - Viviana Ferretti
- Department of Chemical Sciences, University of Naples Federico II, Via Cinthia, 80126 Naples, Italy
| | - Maurizio Lorenti
- Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Center of Benthic Ecology-Villa Dohrn, Punta S. Pietro, 80077 Ischia, Naples, Italy
| | - Manuela Rossi
- Department of Earth, Environment and Resources Sciences, University of Naples Federico II, Via Cinthia, 80126 Naples, Italy; Royal Mineralogical Museum, Centro Musei delle Scienze Naturali e Fisiche, University of Naples Federico II, Via Mezzocannone 8, 80134 Naples, Italy
| | - Marco Trifuoggi
- Department of Chemical Sciences, University of Naples Federico II, Via Cinthia, 80126 Naples, Italy
| | - Alessandro Vergara
- Department of Chemical Sciences, University of Naples Federico II, Via Cinthia, 80126 Naples, Italy; CEINGE Biotecnologie Avanzate scarl, Naples, Italy
| | - Carmen Arena
- Department of Biology, University of Naples Federico II, Via Cinthia, 80126 Naples, Italy
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14
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Herget K, Frerichs H, Pfitzner F, Tahir MN, Tremel W. Functional Enzyme Mimics for Oxidative Halogenation Reactions that Combat Biofilm Formation. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1707073. [PMID: 29920781 DOI: 10.1002/adma.201707073] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Revised: 01/18/2018] [Indexed: 06/08/2023]
Abstract
Transition-metal oxide nanoparticles and molecular coordination compounds are highlighted as functional mimics of halogenating enzymes. These enzymes are involved in halometabolite biosynthesis. Their activity is based upon the formation of hypohalous acids from halides and hydrogen peroxide or oxygen, which form bioactive secondary metabolites of microbial origin with strong antibacterial and antifungal activities in follow-up reactions. Therefore, enzyme mimics and halogenating enzymes may be valuable tools to combat biofilm formation. Here, halogenating enzyme models are briefly described, enzyme mimics are classified according to their catalytic functions, and current knowledge about the settlement chemistry and adhesion of fouling organisms is summarized. Enzyme mimics with the highest potential are showcased. They may find application in antifouling coatings, indoor and outdoor paints, polymer membranes for water desalination, or in aquacultures, but also on surfaces for food packaging, door handles, hand rails, push buttons, keyboards, and other elements made of plastic where biofilms are present. The use of natural compounds, formed in situ with nontoxic and abundant metal oxide enzyme mimics, represents a novel and efficient "green" strategy to emulate and utilize a natural defense system for preventing bacterial colonization and biofilm growth.
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Affiliation(s)
- Karoline Herget
- Institut für Anorganische Chemie und Analytische Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, D-55128, Mainz, Germany
| | - Hajo Frerichs
- Institut für Anorganische Chemie und Analytische Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, D-55128, Mainz, Germany
| | - Felix Pfitzner
- Institut für Anorganische Chemie und Analytische Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, D-55128, Mainz, Germany
| | - Muhammad Nawaz Tahir
- Institut für Anorganische Chemie und Analytische Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, D-55128, Mainz, Germany
| | - Wolfgang Tremel
- Institut für Anorganische Chemie und Analytische Chemie, Johannes Gutenberg-Universität, Duesbergweg 10-14, D-55128, Mainz, Germany
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15
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Agarwal V, Miles ZD, Winter JM, Eustáquio AS, El Gamal AA, Moore BS. Enzymatic Halogenation and Dehalogenation Reactions: Pervasive and Mechanistically Diverse. Chem Rev 2017; 117:5619-5674. [PMID: 28106994 PMCID: PMC5575885 DOI: 10.1021/acs.chemrev.6b00571] [Citation(s) in RCA: 246] [Impact Index Per Article: 35.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Naturally produced halogenated compounds are ubiquitous across all domains of life where they perform a multitude of biological functions and adopt a diversity of chemical structures. Accordingly, a diverse collection of enzyme catalysts to install and remove halogens from organic scaffolds has evolved in nature. Accounting for the different chemical properties of the four halogen atoms (fluorine, chlorine, bromine, and iodine) and the diversity and chemical reactivity of their organic substrates, enzymes performing biosynthetic and degradative halogenation chemistry utilize numerous mechanistic strategies involving oxidation, reduction, and substitution. Biosynthetic halogenation reactions range from simple aromatic substitutions to stereoselective C-H functionalizations on remote carbon centers and can initiate the formation of simple to complex ring structures. Dehalogenating enzymes, on the other hand, are best known for removing halogen atoms from man-made organohalogens, yet also function naturally, albeit rarely, in metabolic pathways. This review details the scope and mechanism of nature's halogenation and dehalogenation enzymatic strategies, highlights gaps in our understanding, and posits where new advances in the field might arise in the near future.
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Affiliation(s)
- Vinayak Agarwal
- Center for Oceans and Human Health, Scripps Institution of Oceanography, University of California, San Diego
| | - Zachary D. Miles
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego
| | | | - Alessandra S. Eustáquio
- College of Pharmacy, Department of Medicinal Chemistry & Pharmacognosy and Center for Biomolecular Sciences, University of Illinois at Chicago
| | - Abrahim A. El Gamal
- Center for Oceans and Human Health, Scripps Institution of Oceanography, University of California, San Diego
| | - Bradley S. Moore
- Center for Oceans and Human Health, Scripps Institution of Oceanography, University of California, San Diego
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego
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16
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Mithoo-Singh PK, Keng FSL, Phang SM, Leedham Elvidge EC, Sturges WT, Malin G, Abd Rahman N. Halocarbon emissions by selected tropical seaweeds: species-specific and compound-specific responses under changing pH. PeerJ 2017; 5:e2918. [PMID: 28149690 PMCID: PMC5270595 DOI: 10.7717/peerj.2918] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Accepted: 12/17/2016] [Indexed: 11/21/2022] Open
Abstract
Five tropical seaweeds, Kappaphycus alvarezii (Doty) Doty ex P.C. Silva, Padina australis Hauck, Sargassum binderi Sonder ex J. Agardh (syn. S. aquifolium (Turner) C. Agardh), Sargassum siliquosum J. Agardh and Turbinaria conoides (J. Agardh) Kützing, were incubated in seawater of pH 8.0, 7.8 (ambient), 7.6, 7.4 and 7.2, to study the effects of changing seawater pH on halocarbon emissions. Eight halocarbon species known to be emitted by seaweeds were investigated: bromoform (CHBr3), dibro-momethane (CH2Br2), iodomethane (CH3I), diiodomethane (CH2I2), bromoiodomethane (CH2BrI), bromochlorometh-ane (CH2BrCl), bromodichloromethane (CHBrCl2), and dibro-mochloromethane (CHBr2Cl). These very short-lived halocarbon gases are believed to contribute to stratospheric halogen concentrations if released in the tropics. It was observed that the seaweeds emit all eight halocarbons assayed, with the exception of K. alvarezii and S. binderi for CH2I2 and CH3I respectively, which were not measurable at the achievable limit of detection. The effect of pH on halocarbon emission by the seaweeds was shown to be species-specific and compound specific. The highest percentage changes in emissions for the halocarbons of interest were observed at the lower pH levels of 7.2 and 7.4 especially in Padina australis and Sargassum spp., showing that lower seawater pH causes elevated emissions of some halocarbon compounds. In general the seaweed least affected by pH change in terms of types of halocarbon emission, was P. australis. The commercially farmed seaweed K. alvarezii was very sensitive to pH change as shown by the high increases in most of the compounds in all pH levels relative to ambient. In terms of percentage decrease in maximum quantum yield of photosynthesis (Fv∕Fm) prior to and after incubation, there were no significant correlations with the various pH levels tested for all seaweeds. The correlation between percentage decrease in the maximum quantum yield of photosynthesis (Fv∕Fm) and halocarbon emission rates, was significant only for CH2BrCl emission by P. australis (r = 0.47; p ≤ 0.04), implying that photosynthesis may not be closely linked to halocarbon emissions by the seaweeds studied. Bromine was the largest contributor to the total mass of halogen emitted for all the seaweeds at all pH. The highest total amount of bromine emitted by K. alvarezii (an average of 98% of total mass of halogens) and the increase in the total amount of chlorine with decreasing seawater pH fuels concern for the expanding seaweed farming activities in the ASEAN region.
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Affiliation(s)
- Paramjeet Kaur Mithoo-Singh
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
| | - Fiona S.-L. Keng
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia
- Institute of Graduate Studies (IGS), University of Malaya, Kuala Lumpur, Malaysia
| | - Siew-Moi Phang
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
| | - Emma C. Leedham Elvidge
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - William T. Sturges
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Gill Malin
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
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17
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Lindqvist D, Dahlgren E, Asplund L. Biosynthesis of hydroxylated polybrominated diphenyl ethers and the correlation with photosynthetic pigments in the red alga Ceramium tenuicorne. PHYTOCHEMISTRY 2017; 133:51-58. [PMID: 27802868 DOI: 10.1016/j.phytochem.2016.10.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 08/18/2016] [Accepted: 10/13/2016] [Indexed: 06/06/2023]
Abstract
Hydroxylated polybrominated diphenyl ethers (OH-PBDEs) have been identified in a variety of marine organisms from different trophic levels indicating a large spread in the environment. There is much evidence pointing towards natural production as the major source of these compounds in nature. However, much is still not known about the natural production of these compounds. Seasonal trend studies have shown large fluctuations in the levels of OH-PBDEs in Ceramium tenuicorne from the Baltic Sea. Yet, even though indications of stimuli that can induce the production of these compounds have been observed, none, neither internal nor external, has been assigned to be responsible for the recorded fluctuations. In the present study the possible relationship between the concentration of pigments and that of OH-PBDEs in C. tenuicorne has been addressed. Significant correlations were revealed between the concentrations of all OH-PBDEs quantified and the concentrations of both chlorophyll a and Σxanthophylls + carotenoids. All of which displayed a concentration peak in mid-July. The levels of OH-PBDEs may be linked to photosynthetic activity, and hence indirectly to photosynthetic pigments, via bromoperoxidase working as a scavenger for hydrogen peroxide formed during photosynthesis. Yet the large apparent investment in producing specific OH-PBDE congeners point towards an targeted production, with a more specific function than being a waste product of photosynthesis. The OH-PBDE congener pattern observed in this study is not agreeable with some currently accepted models for the biosynthesis of these compounds, and indicates a more selective route than previously considered in C. tenuicorne.
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Affiliation(s)
- Dennis Lindqvist
- Department of Environmental Science and Analytical Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden.
| | - Elin Dahlgren
- Legal Affairs, Swedish Environmental Protection Agency, SE-106 48 Stockholm, Sweden
| | - Lillemor Asplund
- Department of Environmental Science and Analytical Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
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18
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Matsuda R, Ozgur R, Higashi Y, Takechi K, Takano H, Takio S. Preferential expression of a bromoperoxidase in sporophytes of a red alga, Pyropia yezoensis. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2015; 17:199-210. [PMID: 25407492 DOI: 10.1007/s10126-014-9608-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2014] [Accepted: 10/21/2014] [Indexed: 06/04/2023]
Abstract
A 2,158 bp cDNA (PyBPO1) encoding a bromoperoxidase (BPO) of 625 amino acids was isolated from Pyropia yezoensis. Phylogenetic analysis using amino acid sequences of BPOs suggested that P. yezoensis and cyanobacteria were grouped in the same clade and separated from brown algae. Genomic Southern blot analysis suggested that PyBPO1 existed as a single copy per haploid genome. RT-PCR revealed that PyBPO1 was actively expressed in filamentous sporophytes but repressed in leafy gametophytes under normal growth conditions. High expression levels of PyBPO1 in sporophytes were observed when sporophytes were grown under gametophyte conditions, suggesting that preferential expression of PyBPO1 occurs during the sporophyte phase. BPO activity of cell-free extracts from sporophytes and gametophytes was examined by activity staining on native PAGE gel using o-dianisidine. One activity band was detected in sporophyte sample, but not in gametophyte sample. In addition, we found that bromide and iodide were effective substrate, but chloride was not. BPO activity was observed-likely in chloroplasts-when sporophyte cells were incubated with o-dianisidine and hydrogen peroxide. Cellular BPO staining showed the same halogen preference identified by in-gel BPO staining. Based on GS-MS analysis, bromoform was detected in medium containing sporophytes. Bromoform was not detected under dark culture conditions but was detected in the culture exposed to low light intensity (5 μmol m(-2) s(-1)) and increased under a moderate light intensity (30 μmol m(-2) s(-1)).
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Affiliation(s)
- Ryuya Matsuda
- Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto, 860-8555, Japan
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19
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Hille-Rehfeld A. Halogenierte Naturstoffe. CHEM UNSERER ZEIT 2014. [DOI: 10.1002/ciuz.201400682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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20
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Küpper FC, Leblanc C, Meyer-Klaucke W, Potin P, Feiters MC. Different speciation for bromine in brown and red algae, revealed by in vivo X-ray absorption spectroscopic studies. JOURNAL OF PHYCOLOGY 2014; 50:652-664. [PMID: 26988449 DOI: 10.1111/jpy.12199] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2013] [Accepted: 03/22/2014] [Indexed: 06/05/2023]
Abstract
Members of various algal lineages are known to be strong producers of atmospherically relevant halogen emissions, that is a consequence of their capability to store and metabolize halogens. This study uses a noninvasive, synchrotron-based technique, X-ray absorption spectroscopy, for addressing in vivo bromine speciation in the brown algae Ectocarpus siliculosus, Ascophyllum nodosum, and Fucus serratus, the red algae Gracilaria dura, G. gracilis, Chondrus crispus, Osmundea pinnatifida, Asparagopsis armata, Polysiphonia elongata, and Corallina officinalis, the diatom Thalassiosira rotula, the dinoflagellate Lingulodinium polyedrum and a natural phytoplankton sample. The results highlight a diversity of fundamentally different bromine storage modes: while most of the stramenopile representatives and the dinoflagellate store mostly bromide, there is evidence for Br incorporated in nonaromatic hydrocarbons in Thalassiosira. Red algae operate various organic bromine stores - including a possible precursor (by the haloform reaction) for bromoform in Asparagopsis and aromatically bound Br in Polysiphonia and Corallina. Large fractions of the bromine in the red algae G. dura and C. crispus and the brown alga F. serratus are present as Br(-) defects in solid KCl, similar to what was reported earlier for Laminaria parts. These results are discussed according to different defensive strategies that are used within algal taxa to cope with biotic or abiotic stresses.
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Affiliation(s)
- Frithjof C Küpper
- Oceanlab, University of Aberdeen, Main Street, Newburgh, AB41 6 AA, UK
- Scottish Association for Marine Science, Dunstaffnage Marine Laboratory, Argyll, Oban, PA37 1QA, UK
| | - Catherine Leblanc
- Integrative Biology of Marine Models, Centre National de la Recherche Scientifique, Station Biologique, Roscoff, F-29680, France
- Marine Plants and Biomolecules Laboratory, Université Pierre et Marie Curie, Université Paris 6, Station Biologique, Roscoff, F-29680, France
| | - Wolfram Meyer-Klaucke
- European Molecular Biology Laboratory (EMBL), Hamburg Unit, c/o DESY, Notkestrasse 85, Hamburg, D-22607, Germany
| | - Philippe Potin
- Integrative Biology of Marine Models, Centre National de la Recherche Scientifique, Station Biologique, Roscoff, F-29680, France
- Marine Plants and Biomolecules Laboratory, Université Pierre et Marie Curie, Université Paris 6, Station Biologique, Roscoff, F-29680, France
| | - Martin C Feiters
- Department of Organic Chemistry, Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, Nijmegen, NL-6525 AJ, The Netherlands
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Wever R, van der Horst MA. The role of vanadium haloperoxidases in the formation of volatile brominated compounds and their impact on the environment. Dalton Trans 2013; 42:11778-86. [PMID: 23657250 DOI: 10.1039/c3dt50525a] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Vanadium haloperoxidases differ strongly from heme peroxidases in substrate specificity and stability and in contrast to a heme group they contain the bare metal oxide vanadate as a prosthetic group. These enzymes specifically oxidize halides in the presence of hydrogen peroxide into hypohalous acids. These reactive halogen intermediates will react rapidly and aspecifically with many organic molecules. Marine algae and diatoms containing these iodo- and bromoperoxidases produce short-lived brominated methanes (bromoform, CHBr3 and dibromomethane CH2Br2) or iodinated compounds. Some seas and oceans are supersaturated with these compounds and they form an important source of bromine to the troposphere and lower stratosphere and contribute significantly to the global budget of halogenated hydrocarbons. This perspective focuses, in particular, on the biosynthesis of these volatile compounds and the direct or indirect involvement of vanadium haloperoxidases in the production of huge amounts of bromoform and dibromomethane. Some of the global sources are discussed and from the literature a picture emerges in which oxidized brominated species generated by phytoplankton, seaweeds and cyanobacteria react with dissolved organic matter in seawater, resulting in the formation of intermediate brominated compounds. These compounds are unstable and decay via a haloform reaction to form an array of volatile brominated compounds of which bromoform is the major component followed by dibromomethane.
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Affiliation(s)
- Ron Wever
- University of Amsterdam, Van't Hoff Institute for Molecular Sciences, Science Park 904, 1098 XH Amsterdam, The Netherlands.
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Baharum H, Chu WC, Teo SS, Ng KY, Rahim RA, Ho CL. Molecular cloning, homology modeling and site-directed mutagenesis of vanadium-dependent bromoperoxidase (GcVBPO1) from Gracilaria changii (Rhodophyta). PHYTOCHEMISTRY 2013; 92:49-59. [PMID: 23684235 DOI: 10.1016/j.phytochem.2013.04.014] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2012] [Revised: 03/01/2013] [Accepted: 04/22/2013] [Indexed: 06/02/2023]
Abstract
Vanadium-dependent haloperoxidases belong to a class of vanadium enzymes that may have potential industrial and pharmaceutical applications due to their high stability. In this study, the 5'-flanking genomic sequence and complete reading frame encoding vanadium-dependent bromoperoxidase (GcVBPO1) was cloned from the red seaweed, Fracilaria changii, and the recombinant protein was biochemically characterized. The deduced amino acid sequence of GcVBPO1 is 1818 nucleotides in length, sharing 49% identity with the vanadium-dependent bromoperoxidases from Corralina officinalis and Cor. pilulifera, respectively. The amino acid residues associated with the binding site of vanadate cofactor were found to be conserved. The Km value of recombinant GcVBPO1 for Br(-) was 4.69 mM, while its Vmax was 10.61 μkat mg(-1) at pH 7. Substitution of Arg(379) with His(379) in the recombinant protein caused a lower affinity for Br(-), while substitution of Arg(379) with Phe(379) not only increased its affinity for Br(-) but also enabled the mutant enzyme to oxidize Cl(-). The mutant Arg(379)Phe was also found to have a lower affinity for I(-), as compared to the wild-type GcVBPO1 and mutant Arg(379)His. In addition, the Arg(379)Phe mutant has a slightly higher affinity for H2O2 compared to the wild-type GcVBPO1. Multiple cis-acting regulatory elements associated with light response, hormone signaling, and meristem expression were detected at the 5'-flanking genomic sequence of GcVBPO1. The transcript abundance of GcVBPO1 was relatively higher in seaweed samples treated with 50 parts per thousand (ppt) artificial seawater (ASW) compared to those treated in 10 and 30 ppt ASW, in support of its role in the abiotic stress response of seaweed.
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Affiliation(s)
- H Baharum
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
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Bengtson P, Bastviken D, Oberg G. Possible roles of reactive chlorine II: assessing biotic chlorination as a way for organisms to handle oxygen stress. Environ Microbiol 2012; 15:991-1000. [PMID: 22712445 DOI: 10.1111/j.1462-2920.2012.02807.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Natural formation of organically bound chlorine is extensive in many environments. The enzymes associated with the formation of chlorinated organic matter are produced by a large variety of organisms. Little is known about the ecological role of the process, the key question being: why do microorganisms promote chlorination of organic matter? In a recent paper we discuss whether organic matter chlorination may be a result of antagonistic interactions among microorganisms. In the present paper we evaluate whether extracellular microbial formation of reactive chlorine may be used as a defence against oxygen stress, and we discuss whether this process is likely to contribute to the formation of chlorinated organic matter. Our analysis suggests that periodic exposure to elevated concentrations of reactive oxygen species is a common denominator among the multitude of organisms that are able to enzymatically catalyse formation of reactive chlorine. There is also some evidence suggesting that the production of such enzymes in algae and bacteria is induced by oxygen stress. The relative contribution from this process to the extensive formation of chlorinated organic matter in natural environments remains to be empirically assessed.
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Affiliation(s)
- Per Bengtson
- Department of Biology - Microbial Ecology, Lund University, The Ecology Building, Lund SE-223 62, Sweden
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Mata L, Gaspar H, Santos R. CARBON/NUTRIENT BALANCE IN RELATION TO BIOMASS PRODUCTION AND HALOGENATED COMPOUND CONTENT IN THE RED ALGA ASPARAGOPSIS TAXIFORMIS (BONNEMAISONIACEAE)(1). JOURNAL OF PHYCOLOGY 2012; 48:248-253. [PMID: 27009670 DOI: 10.1111/j.1529-8817.2011.01083.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We tested how the availability of carbon and nitrogen determines both the production of Asparagopsis taxiformis (Delile) V. Trevis. and content of the two major halocarbons, bromoform and dibromoacetic acid. The halogenated secondary metabolites of Asparagopsis species are particularly interesting from an applied perspective due to their remarkable antimicrobial activity. Terrestrial ecologists named the relationship between resources and secondary metabolites as the carbon (C)/nutrient balance (CNB) hypothesis. This relationship was tested both in the laboratory, with a factorial analysis using different concentrations of total ammonia (TAN) and dissolved inorganic carbon (DIC), and in an integrated aquaculture system where TAN and DIC fluxes of fish effluent were manipulated. The total C/N content of A. taxiformis biomass cultivated in laboratory was highly significantly linearly related to the content of both halocarbons, as predicted by the CNB hypothesis. A. taxiformis cultivated at low levels of carbon and high levels of nitrogen (N) (lowest C/N ratio) had the lowest content in both halogenated metabolites. Increased availability of CO2 in the medium resulted in a general higher halocarbon content in the biomass, even though the effect was only statistically significant for bromoform at high levels of N. The farm experiments supported the results of the laboratory experiments. DIC fluxes had the highest effect on the production of both bromoform and biomass, as shown by multiple regression analysis. In A. taxiformis integrated aquaculture, C, rather than N, is the most important factor affecting the production of biomass and of valuable halocarbon secondary metabolites.
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Affiliation(s)
- Leonardo Mata
- Algae-Marine Plant Ecology Research Group, Center of Marine Sciences, Universidade do Algarve, 8005-139 Faro, Portugal School of Marine and Tropical Biology, James Cook University, Townsville, 4811 Queensland, AustraliaCentro de Química e Bioquímica, DQB, Faculdade de Ciências da Universidade de Lisboa (FCUL), 1749-016 Lisbon, PortugalAlgae-Marine Plant Ecology Research Group, Center of Marine Sciences, Universidade do Algarve, 8005-139 Faro, Portugal
| | - Helena Gaspar
- Algae-Marine Plant Ecology Research Group, Center of Marine Sciences, Universidade do Algarve, 8005-139 Faro, Portugal School of Marine and Tropical Biology, James Cook University, Townsville, 4811 Queensland, AustraliaCentro de Química e Bioquímica, DQB, Faculdade de Ciências da Universidade de Lisboa (FCUL), 1749-016 Lisbon, PortugalAlgae-Marine Plant Ecology Research Group, Center of Marine Sciences, Universidade do Algarve, 8005-139 Faro, Portugal
| | - Rui Santos
- Algae-Marine Plant Ecology Research Group, Center of Marine Sciences, Universidade do Algarve, 8005-139 Faro, Portugal School of Marine and Tropical Biology, James Cook University, Townsville, 4811 Queensland, AustraliaCentro de Química e Bioquímica, DQB, Faculdade de Ciências da Universidade de Lisboa (FCUL), 1749-016 Lisbon, PortugalAlgae-Marine Plant Ecology Research Group, Center of Marine Sciences, Universidade do Algarve, 8005-139 Faro, Portugal
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25
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Johnson TL, Palenik B, Brahamsha B. CHARACTERIZATION OF A FUNCTIONAL VANADIUM-DEPENDENT BROMOPEROXIDASE IN THE MARINE CYANOBACTERIUM SYNECHOCOCCUS SP. CC9311(1). JOURNAL OF PHYCOLOGY 2011; 47:792-801. [PMID: 27020015 DOI: 10.1111/j.1529-8817.2011.01007.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Vanadium-dependent bromoperoxidases (VBPOs) are characterized by the ability to oxidize halides using hydrogen peroxide. These enzymes are well-studied in eukaryotic macroalgae and are known to produce a variety of brominated secondary metabolites. Though genes have been annotated as VBPO in multiple prokaryotic genomes, they remain uncharacterized. The genome of the coastal marine cyanobacterium Synechococcus sp. CC9311 encodes a predicted VBPO (YP_731869.1, sync_2681), and in this study, we show that protein extracts from axenic cultures of Synechococcus possess bromoperoxidase activity, oxidizing bromide and iodide, but not chloride. In-gel activity assays of Synechococcus proteins separated using PAGE reveal a single band having VBPO activity. When sequenced via liquid chromatography/mass spectrometry/mass spectrometry (LC/MS/MS), peptides from the band aligned to the VBPO sequence predicted by the open reading frame (ORF) sync_2681. We show that a VBPO gene is present in a closely related strain, Synechococcus sp. WH8020, but not other clade I Synechococcus strains, consistent with recent horizontal transfer of the gene into Synechococcus. Diverse cyanobacterial-like VBPO genes were detected in a pelagic environment off the California coast using PCR. Investigation of functional VBPOs in unicellular cyanobacteria may lead to discovery of novel halogenated molecules and a better understanding of these organisms' chemical ecology and physiology.
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Affiliation(s)
- Todd L Johnson
- Scripps Institution of Oceanography, University of California San Diego, 8750 Biological Grade, La Jolla, California 92093-0202, USA
| | - Brian Palenik
- Scripps Institution of Oceanography, University of California San Diego, 8750 Biological Grade, La Jolla, California 92093-0202, USA
| | - Bianca Brahamsha
- Scripps Institution of Oceanography, University of California San Diego, 8750 Biological Grade, La Jolla, California 92093-0202, USA
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26
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Paul C, Pohnert G. Production and role of volatile halogenated compounds from marine algae. Nat Prod Rep 2010; 28:186-95. [PMID: 21125112 DOI: 10.1039/c0np00043d] [Citation(s) in RCA: 115] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Carsten Paul
- Friedrich Schiller University Jena, Department for Bioorganic Analytics, Lessingstraße 8, 07743, Jena, Germany
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27
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Eggert A, Peters AF, Küpper FC. The Potential Impact of Climate Change on Endophyte Infections in Kelp Sporophytes. CELLULAR ORIGIN, LIFE IN EXTREME HABITATS AND ASTROBIOLOGY 2010. [DOI: 10.1007/978-90-481-8569-6_9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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28
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Teo SS, Ho CL, Teoh S, Rahim RA, Phang SM. TRANSCRIPTOMIC ANALYSIS OF GRACILARIA CHANGII (RHODOPHYTA) IN RESPONSE TO HYPER- AND HYPOOSMOTIC STRESSES(1). JOURNAL OF PHYCOLOGY 2009; 45:1093-1099. [PMID: 27032354 DOI: 10.1111/j.1529-8817.2009.00724.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Osmotic stress is one of the most significant natural abiotic stresses that occur in the intertidal zones. Seaweeds may physiologically acclimate to changing osmolarity by altering their transcriptome. Here, we investigated the transcriptomic changes of Gracilaria changii (B. M. Xia et I. A. Abbott) I. A. Abbott, J. Zhang et B. M. Xia in response to hyper- and hypoosmotic stresses using a cDNA microarray approach. Microarray analysis revealed that 199 and 200 genes from ∼3,300 genes examined were up- and down-regulated by >2-fold in seaweed samples treated at 50 parts per thousand (ppt) artificial seawater (ASW) compared with those at 30 ppt ASW, respectively. The number of genes that were up- and down-regulated by >2-fold in seaweed samples treated at 10 ppt ASW compared with those at 30 ppt ASW were 154 and 187, respectively. A majority of these genes were only differentially expressed under hyper- or hypoosmotic conditions, whereas 67 transcripts were affected by both stresses. The findings of this study have shed light on the expression profiles of many transcripts during the acclimation of G. changii to hyperosmotic and hypoosmotic conditions. This information may assist in the prioritization of genes to be examined in future studies.
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Affiliation(s)
- Swee-Sen Teo
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM-Serdang, Selangor, MalaysiaInstitute of Biological Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Chai-Ling Ho
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM-Serdang, Selangor, MalaysiaInstitute of Biological Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Seddon Teoh
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM-Serdang, Selangor, MalaysiaInstitute of Biological Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Raha Abdul Rahim
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM-Serdang, Selangor, MalaysiaInstitute of Biological Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Siew-Moi Phang
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM-Serdang, Selangor, MalaysiaInstitute of Biological Sciences, University of Malaya, 50603 Kuala Lumpur, Malaysia
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29
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Bengtson P, Bastviken D, de Boer W, Oberg G. Possible role of reactive chlorine in microbial antagonism and organic matter chlorination in terrestrial environments. Environ Microbiol 2009; 11:1330-9. [PMID: 19453612 DOI: 10.1111/j.1462-2920.2009.01915.x] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Several studies have demonstrated that extensive formation of organically bound chlorine occurs both in soil and in decaying plant material. Previous studies suggest that enzymatic formation of reactive chlorine outside cells is a major source. However, the ecological role of microbial-induced extracellular chlorination processes remains unclear. In the present paper, we assess whether or not the literature supports the hypothesis that extracellular chlorination is involved in direct antagonism against competitors for the same resources. Our review shows that it is by no means rare that biotic processes create conditions that render biocidal concentrations of reactive chlorine compounds, which suggest that extracellular production of reactive chlorine may have an important role in antagonistic microbial interactions. To test the validity, we searched the UniprotPK database for microorganisms that are known to produce haloperoxidases. It appeared that many of the identified haloperoxidases from terrestrial environments are originating from organisms that are associated with living plants or decomposing plant material. The results of the in silico screening were supported by various field and laboratory studies on natural chlorination. Hence, the ability to produce reactive chlorine seems to be especially common in environments that are known for antibiotic-mediated competition for resources (interference competition). Yet, the ability to produce haloperoxidases is also recorded, for example, for plant endosymbionts and parasites, and there is little or no empirical evidence that suggests that these organisms are antagonistic.
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Affiliation(s)
- Per Bengtson
- Department of Microbial Ecology, Lund University, Lund, Sweden
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Latham H. Temperature stress-induced bleaching of the coralline alga Corallina officinalis: a role for the enzyme bromoperoxidase. ACTA ACUST UNITED AC 2008. [DOI: 10.1093/biohorizons/hzn016] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Kamenarska Z, Taniguchi T, Ohsawa N, Hiraoka M, Itoh N. A vanadium-dependent bromoperoxidase in the marine red alga Kappaphycus alvarezii (Doty) Doty displays clear substrate specificity. PHYTOCHEMISTRY 2007; 68:1358-66. [PMID: 17434548 DOI: 10.1016/j.phytochem.2007.03.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2006] [Revised: 02/23/2007] [Accepted: 03/02/2007] [Indexed: 05/14/2023]
Abstract
Bromoperoxidase activity was initially detected in marine macroalgae belonging to the Solieriaceae family (Gigartinales, Rhodophyta), including Solieria robusta (Greville) Kylin, Eucheuma serra J. Agardh and Kappaphycus alvarezii (Doty) Doty, which are important industrial sources of the polysaccharide carrageenan. Notably, the purification of bromoperoxidase was difficult because due to the coexistence of viscoid polysaccharides. The activity of the partially purified enzyme was dependent on the vanadate ion, and displayed a distinct substrate spectrum from that of previously reported vanadium-dependent bromoperoxidases of marine macroalgae. The enzyme was specific for Br- and I- ions and inactive toward F- and Cl-. The K(m) values for Br- and H2O2 were 2.5x10(-3) M and 8.5x10(-5) M, respectively. The halogenated product, dibromoacetaldehyde, that accumulated in K. alvarezii was additionally determined.
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Affiliation(s)
- Zornitsa Kamenarska
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Sofia 1113, Bulgaria
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32
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Affiliation(s)
- Bradley S Moore
- Scripps Institution of Oceanography and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093, USA
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33
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Debashish G, Malay S, Barindra S, Joydeep M. Marine enzymes. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2005; 96:189-218. [PMID: 16566092 DOI: 10.1007/b135785] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Marine enzyme biotechnology can offer novel biocatalysts with properties like high salt tolerance, hyperthermostability, barophilicity, cold adaptivity, and ease in large-scale cultivation. This review deals with the research and development work done on the occurrence, molecular biology, and bioprocessing of marine enzymes during the last decade. Exotic locations have been accessed for the search of novel enzymes. Scientists have isolated proteases and carbohydrases from deep sea hydrothermal vents. Cold active metabolic enzymes from psychrophilic marine microorganisms have received considerable research attention. Marine symbiont microorganisms growing in association with animals and plants were shown to produce enzymes of commercial interest. Microorganisms isolated from sediment and seawater have been the most widely studied, proteases, carbohydrases, and peroxidases being noteworthy. Enzymes from marine animals and plants were primarily studied for their metabolic roles, though proteases and peroxidases have found industrial applications. Novel techniques in molecular biology applied to assess the diversity of chitinases, nitrate, nitrite, ammonia-metabolizing, and pollutant-degrading enzymes are discussed. Genes encoding chitinases, proteases, and carbohydrases from microbial and animal sources have been cloned and characterized. Research on the bioprocessing of marine-derived enzymes, however, has been scanty, focusing mainly on the application of solid-state fermentation to the production of enzymes from microbial sources.
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Affiliation(s)
- Ghosh Debashish
- Environmental Science Programme and Department of Life Science & Biotechnology, Jadavpur University, 700 032 Kolkata, India
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Yun AJ, Lee PY, Bazar KA, Daniel SM, Doux JD. The incorporation of iodine in thyroid hormone may stem from its role as a prehistoric signal of ecologic opportunity: An evolutionary perspective and implications for modern diseases. Med Hypotheses 2005; 65:804-10. [PMID: 16042996 DOI: 10.1016/j.mehy.2005.02.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2005] [Accepted: 02/01/2005] [Indexed: 01/03/2023]
Abstract
To optimize fitness under conditions of varying Darwinian opportunity, organisms demonstrate tremendous plasticity in their life-history strategies based on their perception of available resources. Higher-energy environments generally promote more aggressive life-history strategies, such as faster growth, larger adult size, greater genetic variation, shorter lifespan, larger brood sizes, and offspring ratio skewed towards the larger-sized gender. While numerous mechanisms regulate life-history plasticity including genetic imprinting, methylation, and growth factors, evidence suggests that thyroid hormone plays a central role. Given the pivotal adaptive role of thyroid hormone, the teleology of its dependence on dietary iodine for production remains unexplained. We hypothesize that iodine may have emerged as a substrate for production of thyroid hormone in prehistoric ecosystems because the former represented a reliable proxy for ecologic potential that enabled the latter to modulate growth, reproduction, metabolic rate, and lifespan. Such a scenario may have existed in early marine ecosystems where ocean-surface vegetation, which concentrates iodine for its antimicrobial and antioxidant properties, formed the basis of the food chain. Teleologic parallels can be drawn to the food-chain accumulation of antimicrobials that also exhibit antioxidant properties and promote adult size, brood size, and offspring quality by modulating central hormonal axes. As each higher species in the food chain tunes its life-history strategy based on iodine intake, the coupling of this functional role of iodine with its value as a resource signal to the next member of the food-chain may promote runaway evolution. Whereas predators in prehistoric ecosystems successfully tuned their life-history strategy using iodine as a major input, the strategy may prove maladaptive in modern humans for whom the pattern of iodine intake is decoupled from resource availability. Iodine acquired through sodium iodide supplementation may independently contribute to some biologic dysfunctions currently attributed to sodium.
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Affiliation(s)
- Anthony J Yun
- Stanford University, 470 University Avenue, Palo Alto, CA 94301, USA
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35
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Barros MP, Granbom M, Colepicolo P, Pedersén M. Temporal mismatch between induction of superoxide dismutase and ascorbate peroxidase correlates with high H2O2 concentration in seawater from clofibrate-treated red algae Kappaphycus alvarezii. Arch Biochem Biophys 2003; 420:161-8. [PMID: 14622986 DOI: 10.1016/j.abb.2003.09.014] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Algal cells have developed different strategies to cope with the common environmentally promoted generation of H(2)O(2), which include induction of catalase (CAT) and ascorbate peroxidase (APX), massive H(2)O(2) release in seawater, and synthesis of volatile halocarbons by specific peroxidases. The antioxidant adaptability of the economically important carrageenophyte Kappaphycus alvarezii (Doty) Doty (Gigartinales: Rhodophyta) was tested here against exposure to clofibrate (CFB), a known promoter of peroxisomal beta-oxidation in mammals and plants. Possibly as a consequence of CFB-induced H2O2 peroxisomal production, the maximum concentration of H(2)O(2) in the seawater of red algae cultures was found to occur (120+/-17 min) after the addition of CFB, which was followed by a significant decrease in the photosynthetic activity of PSII after 24 h. Interestingly, 4 h after the addition of CFB, the total SOD activity was about 2.5-fold higher than in the control, whereas no significant changes were observed in lipoperoxidation levels (TBARS) or in CAT and APX activities. The two H(2)O(2)-scavenging enzymes were only induced later (after 72 h), whereupon CAT showed a dose-dependent response with increasing concentrations of CFB. A more pronounced increase of TBARS concentration than in the controls was evidenced when a 50 microM Fe(2+/3+) solution (3:2 ratio) was added to CFB-treated cultures, suggesting that the combination of exacerbated H(2)O(2) levels in the seawater-in this work, caused by CFB exposure-and Fenton-reaction catalyst (ferric/ferrous ions), imposes harsh oxidative conditions on algal cultures. The bulk of data suggests that K. alvarezii possesses little ability to promptly induce CAT and APX compared to the immediately responsive antioxidant enzyme SOD and, to avoid harmful accumulation of H(2)O(2), the red alga presumably releases H(2)O(2) into the surrounding medium as an alternative mechanism.
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Affiliation(s)
- Marcelo P Barros
- Centro de Ciências Biológicas e da Saúde, Universidade Cruzeiro do Sul, São Paulo, SP 08060-070, Brazil.
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36
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Abrahamsson K, Choo KS, Pedersén M, Johansson G, Snoeijs P. Effects of temperature on the production of hydrogen peroxide and volatile halocarbons by brackish-water algae. PHYTOCHEMISTRY 2003; 64:725-734. [PMID: 13679095 DOI: 10.1016/s0031-9422(03)00419-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Marine algae produce volatile halocarbons, which have an ozone-depleting potential. The formation of these compounds is thought to be related to oxidative stress, involving H2O2 and algal peroxidases. In our study we found strong correlations between the releases of H2O2 and brominated and some iodinated compounds to the seawater medium, but no such correlation was found for CHCl3, suggesting the involvement of other formation mechanisms as well. Little is known about the effects of environmental factors on the production of volatile halocarbons by algae and in the present study we focused on the influence of temperature. Algae were sampled in an area of the brackish Baltic Sea that receives thermal discharge, allowing us to collect specimens of the same species that were adapted to different field temperature regimes. We exposed six algal species (the diatom Pleurosira laevis, the brown alga Fucus vesiculosus and four filamentous green algae, Cladophora glomerata, Enteromorpha ahlneriana, E. flexuosa and E. intestinalis) to temperature changes of 0-11 degrees C under high irradiation to invoke oxidative stress. The production rates, as well as the quantitative composition of 16 volatile halocarbons, were strongly species-dependent and different types of responses to temperature were recorded. However, no response patterns to temperature change were found that were consistent for all species or for all halocarbons. We conclude that the production of certain halocarbons may increase with temperature in certain algal species, but that the amount and composition of the volatile halocarbons released by algal communities are probably more affected by temperature-associated species shifts. These results may have implications for climatic change scenarios.
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Affiliation(s)
- Katarina Abrahamsson
- Department of Analytical and Marine Chemistry, Chalmers University of Technology, SE-41296, Göteborg, Sweden
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Colin C, Leblanc C, Wagner E, Delage L, Leize-Wagner E, Van Dorsselaer A, Kloareg B, Potin P. The brown algal kelp Laminaria digitata features distinct bromoperoxidase and iodoperoxidase activities. J Biol Chem 2003; 278:23545-52. [PMID: 12697758 DOI: 10.1074/jbc.m300247200] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Different haloperoxidases, one specific for the oxidation of iodide and another that can oxidize both iodide and bromide, were separated from the sporophytes of the brown alga Laminaria digitata and purified to electrophoretic homogeneity. The iodoperoxidase activity was approximately seven times more efficient than the bromoperoxidase fraction in the oxidation of iodide. The two enzymes were markedly different in their molecular masses, trypsin digestion profiles, and immunological characteristics. Also, in contrast to the iodoperoxidase, bromoperoxidases were present in the form of multimeric aggregates of near-identical proteins. Two full-length haloperoxidase cDNAs were isolated from L. digitata, using haloperoxidase partial cDNAs that had been identified previously in an Expressed Sequence Tag analysis of the life cycle of this species (1). Sequence comparisons, mass spectrometry, and immunological analyses of the purified bromoperoxidase, as well as the activity of the protein expressed in Escherichia coli, all indicate that these almost identical cDNAs encode bromoperoxidases. Haloperoxidases form a large multigenic family in L. digitata, and the potential functions of haloperoxidases in this kelp are discussed.
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Affiliation(s)
- Carole Colin
- UMR 1931, CNRS-Laboratoires Goëmar, Station Biologique, BP 74, F-29682 Roscoff Cedex, France
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38
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Neilson AH. Biological Effects and Biosynthesis of Brominated Metabolites. THE HANDBOOK OF ENVIRONMENTAL CHEMISTRY 2003. [DOI: 10.1007/978-3-540-37055-0_2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/06/2022]
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Bar-Nun N, Shcolnick S, Mayer AM. Presence of a vanadium-dependent haloperoxidase in Botrytis cinerea. FEMS Microbiol Lett 2002; 217:121-4. [PMID: 12445655 DOI: 10.1111/j.1574-6968.2002.tb11465.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
The presence of a haloperoxidase in the mycelium of Botrytis cinerea, extractable with buffer, is demonstrated. A low level of extracellular enzyme activity was also detected. The haloperoxidase from the fungus is a vanadium-dependent glycoprotein, with a pH optimum of about 5.5. Native gel electrophoresis indicates that it is a high molecular mass protein. It appears to react with antibodies against haloperoxidase from Caldariomyces fumago. Enzyme activity is increased 3.5-fold and 15-fold by culture of the fungus in the presence of NaCl or vanadium, respectively. Activity is partly reduced by removal of vanadium and activity can be restored by the addition of vanadium to the enzyme. The possible function of this haloperoxidase is discussed.
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Affiliation(s)
- Nurit Bar-Nun
- Department of Botany, The Hebrew University of Jerusalem, 91904, Jerusalem, Israel
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Ohsawa N, Tsujita M, Morikawa S, Itoh N. Purification and characterization of a monohalomethane-producing enzyme S-adenosyl-L-methionine: halide ion methyltransferase from a marine microalga, Pavlova pinguis. Biosci Biotechnol Biochem 2001; 65:2397-404. [PMID: 11791711 DOI: 10.1271/bbb.65.2397] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
A monohalomethane-producing enzyme, S-adenosyl-L-methionine-dependent halide ion methyltransferase (EC 2.1.1.-) was purified from the marine microalga Pavlova pinguis by two anion exchange, hydroxyapatite and gel filtration chromatographies. The methyltransferase was a monomeric molecule having a molecular weight of 29,000. The enzyme had an isoelectric point at 5.3, and was optimally active at pH 8.0. The Km for iodide and SAM were 12 mM and 12 microM, respectively, which were measured using a partially purified enzyme. Various metal ions had no significant effect on methyl iodide production, suggesting that the enzyme does not require metal ions. The enzyme reaction strictly depended on SAM as a methyl donor, and the enzyme catalyzed methylation of the I-, Br-, and Cl- to corresponding monohalomethanes and of bisulfide to methyl mercaptan.
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Affiliation(s)
- N Ohsawa
- Biotechnology Research Center, Toyama Prefectural University, Japan
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