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Van Anh C, Kang JS, Yang JW, Kwon JH, Heo CS, Lee HS, Shin HJ. Rifamycin-Related Polyketides from a Marine-Derived Bacterium Salinispora arenicola and Their Cytotoxic Activity. Mar Drugs 2023; 21:494. [PMID: 37755107 PMCID: PMC10532523 DOI: 10.3390/md21090494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 09/12/2023] [Accepted: 09/13/2023] [Indexed: 09/28/2023] Open
Abstract
Eight rifamycin-related polyketides were isolated from the culture broth of a marine-derived bacterium Salinispora arenicola, including five known (2-5 and 8) and three new derivatives (1, 6, and 7). The structures of the new compounds were determined by means of spectroscopic methods (HRESIMS and 1D, 2D NMR) and a comparison of their experimental data with those previously reported in the literature. The isolated compounds were evaluated for their cytotoxicity against one normal, six solid, and seven blood cancer cell lines and 1 showed moderate activity against all the tested cell lines with GI50 values ranging from 2.36 to 9.96 µM.
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Affiliation(s)
- Cao Van Anh
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Yeongdo-gu, Busan 49111, Republic of Korea; (C.V.A.); (C.-S.H.); (H.-S.L.)
| | - Jong Soon Kang
- Laboratory Animal Resource Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanjiro, Cheongju 28116, Republic of Korea; (J.S.K.); (J.-W.Y.); (J.-H.K.)
| | - Jeong-Wook Yang
- Laboratory Animal Resource Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanjiro, Cheongju 28116, Republic of Korea; (J.S.K.); (J.-W.Y.); (J.-H.K.)
| | - Joo-Hee Kwon
- Laboratory Animal Resource Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanjiro, Cheongju 28116, Republic of Korea; (J.S.K.); (J.-W.Y.); (J.-H.K.)
| | - Chang-Su Heo
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Yeongdo-gu, Busan 49111, Republic of Korea; (C.V.A.); (C.-S.H.); (H.-S.L.)
- Department of Marine Biotechnology, University of Science and Technology (UST), 217 Gajungro, Yuseong-gu, Daejeon 34113, Republic of Korea
| | - Hwa-Sun Lee
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Yeongdo-gu, Busan 49111, Republic of Korea; (C.V.A.); (C.-S.H.); (H.-S.L.)
| | - Hee Jae Shin
- Marine Natural Products Chemistry Laboratory, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Yeongdo-gu, Busan 49111, Republic of Korea; (C.V.A.); (C.-S.H.); (H.-S.L.)
- Department of Marine Biotechnology, University of Science and Technology (UST), 217 Gajungro, Yuseong-gu, Daejeon 34113, Republic of Korea
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Bressin RK, Driscoll JL, Wang Y, Koide K. Scalable Preparation of Methylated Ando-Type Horner–Wadsworth–Emmons Reagent. Org Process Res Dev 2019. [DOI: 10.1021/acs.oprd.8b00423] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Robert K. Bressin
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
| | - Julia L. Driscoll
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
| | - Yanping Wang
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
| | - Kazunori Koide
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
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Feng Y, Liu J, Carrasco YP, MacMillan JB, De Brabander JK. Rifamycin Biosynthetic Congeners: Isolation and Total Synthesis of Rifsaliniketal and Total Synthesis of Salinisporamycin and Saliniketals A and B. J Am Chem Soc 2016; 138:7130-42. [DOI: 10.1021/jacs.6b03248] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Yu Feng
- Department of Biochemistry and ‡Harold C. Simmons Comprehensive
Cancer Center, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry
Hines Boulevard, Dallas, Texas 75390-9038, United States
| | - Jun Liu
- Department of Biochemistry and ‡Harold C. Simmons Comprehensive
Cancer Center, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry
Hines Boulevard, Dallas, Texas 75390-9038, United States
| | - Yazmin P. Carrasco
- Department of Biochemistry and ‡Harold C. Simmons Comprehensive
Cancer Center, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry
Hines Boulevard, Dallas, Texas 75390-9038, United States
| | - John B. MacMillan
- Department of Biochemistry and ‡Harold C. Simmons Comprehensive
Cancer Center, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry
Hines Boulevard, Dallas, Texas 75390-9038, United States
| | - Jef K. De Brabander
- Department of Biochemistry and ‡Harold C. Simmons Comprehensive
Cancer Center, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry
Hines Boulevard, Dallas, Texas 75390-9038, United States
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Feng J, Kasun ZA, Krische MJ. Enantioselective Alcohol C-H Functionalization for Polyketide Construction: Unlocking Redox-Economy and Site-Selectivity for Ideal Chemical Synthesis. J Am Chem Soc 2016; 138:5467-78. [PMID: 27113543 PMCID: PMC4871165 DOI: 10.1021/jacs.6b02019] [Citation(s) in RCA: 125] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The development and application of stereoselective and site-selective catalytic methods that directly convert lower alcohols to higher alcohols are described. These processes merge the characteristics of transfer hydrogenation and carbonyl addition, exploiting alcohols and π-unsaturated reactants as redox pairs, which upon hydrogen transfer generate transient carbonyl-organometal pairs en route to products of C-C coupling. Unlike classical carbonyl additions, stoichiometric organometallic reagents and discrete alcohol-to-carbonyl redox reactions are not required. Additionally, due to a kinetic preference for primary alcohol dehydrogenation, the site-selective modification of glycols and higher polyols is possible, streamlining or eliminating use of protecting groups. The total syntheses of several iconic type I polyketide natural products were undertaken using these methods. In each case, the target compounds were prepared in significantly fewer steps than previously achieved.
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Affiliation(s)
- Jiajie Feng
- University of Texas at Austin, Department of Chemistry, Austin, TX 78712, USA
| | - Zachary A. Kasun
- University of Texas at Austin, Department of Chemistry, Austin, TX 78712, USA
| | - Michael J. Krische
- University of Texas at Austin, Department of Chemistry, Austin, TX 78712, USA
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Wright PM, Seiple IB, Myers AG. The evolving role of chemical synthesis in antibacterial drug discovery. Angew Chem Int Ed Engl 2014; 53:8840-69. [PMID: 24990531 PMCID: PMC4536949 DOI: 10.1002/anie.201310843] [Citation(s) in RCA: 265] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2013] [Indexed: 01/13/2023]
Abstract
The discovery and implementation of antibiotics in the early twentieth century transformed human health and wellbeing. Chemical synthesis enabled the development of the first antibacterial substances, organoarsenicals and sulfa drugs, but these were soon outshone by a host of more powerful and vastly more complex antibiotics from nature: penicillin, streptomycin, tetracycline, and erythromycin, among others. These primary defences are now significantly less effective as an unavoidable consequence of rapid evolution of resistance within pathogenic bacteria, made worse by widespread misuse of antibiotics. For decades medicinal chemists replenished the arsenal of antibiotics by semisynthetic and to a lesser degree fully synthetic routes, but economic factors have led to a subsidence of this effort, which places society on the precipice of a disaster. We believe that the strategic application of modern chemical synthesis to antibacterial drug discovery must play a critical role if a crisis of global proportions is to be averted.
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Affiliation(s)
- Peter M. Wright
- Department of Chemistry and Chemical Biology, Harvard University Cambridge, MA 02138 (USA)
| | - Ian B. Seiple
- Department of Chemistry and Chemical Biology, Harvard University Cambridge, MA 02138 (USA)
| | - Andrew G. Myers
- Department of Chemistry and Chemical Biology, Harvard University Cambridge, MA 02138 (USA)
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Wright PM, Seiple IB, Myers AG. Zur Rolle der chemischen Synthese in der Entwicklung antibakterieller Wirkstoffe. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201310843] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Stereoselective synthesis of (3S,5S,6S)-tetrahydro-6-isopropyl-3,5-dimethylpyran-2-one; a C5-epimer of a component of a natural sex pheromone of the wasp Macrocentrus grandii, the larval parasitoid of the European corn borer Ostrinia nubilalis. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.tetasy.2011.08.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Xu J, Wan E, Kim CJ, Floss HG, Mahmud T. Identification of tailoring genes involved in the modification of the polyketide backbone of rifamycin B by Amycolatopsis mediterranei S699. MICROBIOLOGY-SGM 2005; 151:2515-2528. [PMID: 16079331 DOI: 10.1099/mic.0.28138-0] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Rifamycin B biosynthesis by Amycolatopsis mediterranei S699 involves a number of unusual modification reactions in the formation of the unique polyketide backbone and decoration of the molecule. A number of genes believed to be involved in the tailoring of rifamycin B were investigated and the results confirmed that the formation of the naphthalene ring moiety of rifamycin takes place during the polyketide chain extension and is catalysed by Rif-Orf19, a 3-(3-hydroxyphenyl)propionate hydroxylase-like protein. The cytochrome P450-dependent monooxygenase encoded by rif-orf5 is required for the conversion of the Delta12, 29 olefinic bond in the polyketide backbone of rifamycin W into the ketal moiety of rifamycin B. Furthermore, Rif-Orf3 may be involved in the regulation of rifamycin B production, as its knock-out mutant produced about 40 % more rifamycin B than the wild-type. The work also revealed that many of the genes located in the cluster are not involved in rifamycin biosynthesis, but might be evolutionary remnants carried over from an ancestral lineage.
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Affiliation(s)
- Jun Xu
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA
| | - Eva Wan
- Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR 97331-3507, USA
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA
| | - Chang-Joon Kim
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA
| | - Heinz G Floss
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA
| | - Taifo Mahmud
- Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, OR 97331-3507, USA
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA
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Tsunashima K, Ide M, Kadoi H, Hirayama A, Nakata M. Synthesis of the C15–C27 portion of venturicidins: a formal total synthesis of venturicidin X. Tetrahedron Lett 2001. [DOI: 10.1016/s0040-4039(01)00518-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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10
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Natural products with polyene amide structures. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s1572-5995(00)80011-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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Kernen P, Vogel P. Synthesis of Polypropionate Fragments Containing Tertiary-Alcohol Moieties. Cross-aldolisations with lithium enolates of 7-oxabicyclo[2.2.1]heptan-2-one derivatives. Helv Chim Acta 1995. [DOI: 10.1002/hlca.19950780205] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Nakata M, Ishiyama T, Akamatsu S, Hirose Y, Maruoka H, Suzuki R, Tatsuta K. Synthetic Studies on Oligomycins. Synthesis of the Oligomycin B Spiroketal and Polypropionate Portions. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1995. [DOI: 10.1246/bcsj.68.967] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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13
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Stereocontrolled aldol additions to α-methylene-β-alkoxy aldehydes: Application to the synthesis of a C13C25 segment of bafilomycin A1. Tetrahedron Lett 1995. [DOI: 10.1016/0040-4039(94)02205-p] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Miyashita M, Yoshihara K, Kawamine K, Hoshino M, Irie H. Synthetic studies on polypropionate antibiotics based on the stereospecific methylation of γ δ-epoxy acrylates by trimethylaluminum. A highly stereoselective construction of the eight contiguous chiral centers of ansa-chains of rifamycins. Tetrahedron Lett 1993. [DOI: 10.1016/s0040-4039(00)73733-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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15
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Paterson I, Bower S, Tillyer RD. 13-Asymmetric induction in the aldol reactions of α-methylene-β-alkoxy aldehydes. Tetrahedron Lett 1993. [DOI: 10.1016/s0040-4039(00)79361-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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16
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Kernen P, Vogel P. Total asymmetric synthesis of polypropionate fragments and doubly branched heptono-1,4-lactones. Tetrahedron Lett 1993. [DOI: 10.1016/s0040-4039(00)60444-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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17
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Roush WR, Madar DJ. Towards the synthesis of streptovaricin D: Synthesis of fully elaborated aromatic precursors and coupling with ansa chain fragments. Tetrahedron Lett 1993. [DOI: 10.1016/0040-4039(93)85004-g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Nakata M, Osumi T, Ueno A, Kimura T, Tamai T, Tatsuta K. The Total Synthesis of Herbimycin A. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1992. [DOI: 10.1246/bcsj.65.2974] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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