1
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Bonache MC, -Doyagüez EG, Benito-Arenas R, Bonache MA, Jimeno ML, San-Félix A. Skeletal Transformations Observed in the Reaction of a Tricyclic Thymine Nucleoside with Dicarbonyl Compounds. ACS OMEGA 2024; 9:36259-36272. [PMID: 39220522 PMCID: PMC11359620 DOI: 10.1021/acsomega.4c02553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 07/09/2024] [Accepted: 08/02/2024] [Indexed: 09/04/2024]
Abstract
Some intriguing skeletal transformations were observed in the reaction of α-hydroxypyrrolidine thymine nucleoside 2 with different dicarbonyl compounds. In these reactions, unusual ring systems, together with new C-C bonds and stereogenic centers of defined configuration, were formed in a single step. These reactions were initiated by the nucleophilic attack of the NH of the pyrrolidine ring, present on 2, on one of the carbonyl moieties of a dicarbonyl reagent and seem to proceed through an enamine-iminium mechanism. The present methodology is particularly attractive because no catalyst or aggressive conditions are needed. The new polycyclic nucleosides obtained from 2 can be good scaffolds for diversification. In fact, modification and derivatization can be achieved by performing further chemical transformations of the functional groups present in some of them. This may lead to the formation of new highly functionalized nucleosides. Our results show the high synthetic potential of 2 to construct complex systems in an efficient way. On the other hand, the enamine chemistry involved in the particular reactivity of the α-hydroxy pyrrolidine ring present in 2 has no connection with the nucleobase and could be extended to simple glycosides preserving this essential ring system.
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Affiliation(s)
- María-Cruz Bonache
- Instituto
de Química Médica (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Elisa G. -Doyagüez
- Centro
de Química Orgánica “Lora-Tamayo” (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Raúl Benito-Arenas
- Instituto
de Química Orgánica General (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - M. Angeles Bonache
- Instituto
de Química Médica (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - María-Luisa Jimeno
- Centro
de Química Orgánica “Lora-Tamayo” (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Ana San-Félix
- Instituto
de Química Médica (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
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2
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Kubyshkin V, Rubini M. Proline Analogues. Chem Rev 2024; 124:8130-8232. [PMID: 38941181 DOI: 10.1021/acs.chemrev.4c00007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/30/2024]
Abstract
Within the canonical repertoire of the amino acid involved in protein biogenesis, proline plays a unique role as an amino acid presenting a modified backbone rather than a side-chain. Chemical structures that mimic proline but introduce changes into its specific molecular features are defined as proline analogues. This review article summarizes the existing chemical, physicochemical, and biochemical knowledge about this peculiar family of structures. We group proline analogues from the following compounds: substituted prolines, unsaturated and fused structures, ring size homologues, heterocyclic, e.g., pseudoproline, and bridged proline-resembling structures. We overview (1) the occurrence of proline analogues in nature and their chemical synthesis, (2) physicochemical properties including ring conformation and cis/trans amide isomerization, (3) use in commercial drugs such as nirmatrelvir recently approved against COVID-19, (4) peptide and protein synthesis involving proline analogues, (5) specific opportunities created in peptide engineering, and (6) cases of protein engineering with the analogues. The review aims to provide a summary to anyone interested in using proline analogues in systems ranging from specific biochemical setups to complex biological systems.
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Affiliation(s)
| | - Marina Rubini
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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3
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Sodré PT, Aguilar AM, Alves WA, Coutinho-Neto MD. Intrinsic and environmental modulation of stereoselective aldol organocatalyzed reactions by proline-containing lipopeptides. RSC Adv 2024; 14:21035-21046. [PMID: 38962095 PMCID: PMC11220607 DOI: 10.1039/d4ra03222e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 06/14/2024] [Indexed: 07/05/2024] Open
Abstract
Proline, along with its derivatives, has been employed as an efficient organocatalyst for aldol reactions, with the ability to promote the creation of stereoselective C-C bonds. Even though the Houk-List transition state model is able to explain the stereoselectivity observed when proline is used as a catalyst, few studies investigate the role of microheterogeneous media in modulating the reaction outcome. In this work, molecular dynamics and electronic structure calculations were used to investigate the aldol reaction in the condensed phase. Our research focused on a lipopeptide compound incorporating the proline residue within the sequence PRWG-(C18H37), where P represents l-proline, R stands for l-arginine, W for l-tryptophan, and G for l-glycine. This sequence is covalently bonded to a hydrophobic segment formed by a long aliphatic chain, acting as an organocatalyst in an aqueous solution. This catalytic phase utilizes the complex chemical environment of the solution to achieve high selectivity. Our findings indicate a Houk-List-like mechanism, in which the amide acts as an H-bond donor, complemented by a mechanism in which the counter ion, trifluoracetic acid (TFA), acts as a proton shuttle. Both mechanisms demonstrated low energy barriers-12.23 and 1.42 kcal mol-1 for the (S,R) stereoisomer formation, computed using DLPNO-CCSD with def2-TZVPP basis set. Further, to explore the catalytic effect of the PRWG-(C18H37) lipopeptide in water, molecular dynamics simulations were conducted. It was observed that the micellar phase significantly enhances stereospecific encounters, favouring the experimentally observed ratio of (SR/SS) isomers, in contrast to reactions in a pure cyclohexanone medium. By quantifying the effects enabled by the supramolecular assembly, we were able to shed light on the factors that modify and enhance the stereoslectivity of the reaction.
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Affiliation(s)
- Pedro Tendrih Sodré
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC 09210-580 Santo André Brazil
| | - Andrea Maria Aguilar
- Instituto de Ciências Ambientais, Químicas e Farmacêuticas, Universidade Federal de São Paulo 09972-270 Diadema Brazil
| | - Wendel Andrade Alves
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC 09210-580 Santo André Brazil
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4
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Yu S, Cai Q, Yu T, Li J, Yao C, Li YM. New Binaphthyl-Proline-Based Chiral Ligands Bearing Imidazoline Groups: Design, Synthesis, and Their Application in Enantioselective Conjugate Addition of 4-Hydroxycoumarin and Related Nucleophiles to β,γ-Unsaturated α-Ketoesters. J Org Chem 2023; 88:14928-14944. [PMID: 37874252 DOI: 10.1021/acs.joc.3c01262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
This paper describes the design and application of new binaphthyl-proline-based chiral ligands bearing imidazoline functional groups. These chiral ligands incorporate the advantages of both the binaphthyl and proline skeletons, they are featured with regulatable electronic and steric properties for the imidazoline functional groups, and form chiral complexes with different metal salts such as cuprous acetate. In the presence of an appropriate amount of a chiral catalyst, enantioselective conjugate addition of 4-hydroxycoumarin or related nucleophiles to different β,γ-unsaturated α-ketoesters proceeded readily, giving the desired products in high yield (up to 99%) and excellent enantiomeric excess (up to 99%).
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Affiliation(s)
- Shibo Yu
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin 300350, China
| | - Qihang Cai
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin 300350, China
| | - Tianxu Yu
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin 300350, China
| | - Jiahui Li
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin 300350, China
| | - Chao Yao
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin 300350, China
| | - Yue-Ming Li
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin 300350, China
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5
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Bechtel M, Ebeling M, Huber L, Trapp O. (Photoredox) Organocatalysis in the Emergence of Life: Discovery, Applications, and Molecular Evolution. Acc Chem Res 2023; 56:2801-2813. [PMID: 37752618 DOI: 10.1021/acs.accounts.3c00396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/28/2023]
Abstract
ConspectusLife as we know it is built on complex and perfectly interlocking processes that have evolved over millions of years through evolutionary optimization processes. The emergence of life from nonliving matter and the evolution of such highly efficient systems therefore constitute an enormous synthetic and systems chemistry challenge. Advances in supramolecular and systems chemistry are opening new perspectives that provide insights into living and self-sustaining reaction networks as precursors for life. However, the ab initio synthesis of such a system requires the possibility of autonomous optimization of catalytic properties and, consequently, of an evolutionary system at the molecular level. In this Account, we present our discovery of the formation of substituted imidazolidine-4-thiones (photoredox) organocatalysts from simple prebiotic building blocks such as aldehydes and ketones under Strecker reaction conditions with ammonia and cyanides in the presence of hydrogen sulfide. The necessary aldehydes are formed from CO2 and hydrogen under prebiotically plausible meteoritic or volcanic iron-particle catalysis in the atmosphere of the early Earth. Remarkably, the investigated imidazolidine-4-thiones undergo spontaneous resolution by conglomerate crystallization, opening a pathway for symmetry breaking, chiral amplification, and enantioselective organocatalysis. These imidazolidine-4-thiones enable α-alkylations of aldehydes and ketones by photoredox organocatalysis. Therefore, these photoredox organocatalysts are able to modify their aldehyde building blocks, which leads in an evolutionary process to mutated second-generation and third-generation catalysts. In our experimental studies, we found that this mutation can occur not only by new formation of the imidazolidine core structure of the catalyst from modified aldehyde building blocks or by continuous supply from a pool of available building blocks but also by a dynamic exchange of the carbonyl moiety in ring position 2 of the imidazolidine moiety. Remarkably, it can be shown that by incorporating aldehyde building blocks from their environment, the imidazolidine-4-thiones are able to change and adapt to altering environmental conditions without undergoing the entire formation process. The selection of the mutated catalysts is then based on the different catalytic activities in the modification of the aldehyde building blocks and on the catalysis of subsequent processes that can lead to the formation of molecular reaction networks as progenitors for cellular processes. We were able to show that these imidazolidine-4-thiones not only enable α-alkylations but also facilitate other important transformations, such as the selective phosphorylation of nucleosides to nucleotides as a key step leading to the oligomerization to RNA and DNA. It can therefore be expected that evolutionary processes have already taken place on a small molecular level and have thus developed chemical tools that change over time, representing a hidden layer on the path to enzymatically catalyzed biochemical processes.
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Affiliation(s)
- Maximilian Bechtel
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
| | - Marian Ebeling
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
| | - Laura Huber
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
| | - Oliver Trapp
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
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6
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Kesavulu G, Balachandra B, Prasad KR. Lithio Tris(methylthio)methane as Hydroxy/Thio/Aminocarbonyl Anion Equivalent: Asymmetric Synthesis of α-Amino Acid Esters, Thioesters, Amides, and Peptides. Org Lett 2023. [PMID: 37406168 DOI: 10.1021/acs.orglett.3c01969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/07/2023]
Abstract
The use of lithio tris(methylthio)methane as a hydroxy/thio/amino carbonyl anion equivalent in the synthesis of α-amino acids is reported. Addition of the reagent to nonracemic sulfinimines furnished the α-sulfinamido trithioformates in excellent diastereoselectivity. Unmasking the trithioformates to diverse functionalities, such as α-amino acid thioesters, esters, anilides, amides, and di/tri peptides, without epimerization of chiral centers was accomplished.
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Affiliation(s)
- Gangarajulu Kesavulu
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Biguvu Balachandra
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Kavirayani R Prasad
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
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7
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Cai WY, Ding QN, Zhou L, Chen J. Asymmetric Synthesis of Axially Chiral Molecules via Organocatalytic Cycloaddition and Cyclization Reactions. Molecules 2023; 28:molecules28114306. [PMID: 37298781 DOI: 10.3390/molecules28114306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 05/19/2023] [Accepted: 05/22/2023] [Indexed: 06/12/2023] Open
Abstract
Atropisomeric molecules are present in many natural products, biologically active compounds, chiral ligands and catalysts. Many elegant methodologies have been developed to access axially chiral molecules. Among them, organocatalytic cycloaddition and cyclization have attracted much attention because they have been widely used in the asymmetric synthesis of biaryl/heterobiaryls atropisomers via construction of carbo- and hetero-cycles. This strategy has undoubtedly become and will continue to be a hot topic in the field of asymmetric synthesis and catalysis. This review aims to highlight the recent advancements in this field of atropisomer synthesis by using different organocatalysts in cycloaddition and cyclization strategies. The construction of each atropisomer, its possible mechanism, the role of catalysts, and its potential applications are illustrated.
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Affiliation(s)
- Wei-Yun Cai
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710127, China
| | - Qian-Ni Ding
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710127, China
| | - Ling Zhou
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710127, China
| | - Jie Chen
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710127, China
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8
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Cristóbal C, Corral C, Carretero JC, Ribagorda M, Adrio J. Enantioselective transformations of 5-hydroxymethylfurfural via catalytic asymmetric 1,3-dipolar cycloaddition of azomethine ylides. Chem Commun (Camb) 2023; 59:4336-4339. [PMID: 36943748 DOI: 10.1039/d3cc00499f] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
A catalytic asymmetric 1,3-dipolar cycloaddition between iminoesters derived from 5-hydroxymethylfurfural (HMF) and different activated alkenes is reported. Excellent levels of diastereo and enantioselectivity were obtained when Fesulphos/CuI complex was used as catalyst. This metodology provides an effective and sustainable access to challenging enantioenriched heterocyclic scaffolds and represents one of the rare examples of catalytic asymmetric transformations using HMF as a starting material.
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Affiliation(s)
- Christian Cristóbal
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid, Cantoblanco, Madrid 28049, Spain.
| | - César Corral
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid, Cantoblanco, Madrid 28049, Spain.
| | - Juan C Carretero
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid, Cantoblanco, Madrid 28049, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid 28049, Spain
- Centro de Innovación en Química Avanzada (ORFEO-CINQA), Spain
| | - Maria Ribagorda
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid, Cantoblanco, Madrid 28049, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Javier Adrio
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid, Cantoblanco, Madrid 28049, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid 28049, Spain
- Centro de Innovación en Química Avanzada (ORFEO-CINQA), Spain
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9
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Ge Y, Shao Y, Wu S, Liu P, Li J, Qin H, Zhang Y, Xue XS, Chen Y. Distal Amidoketone Synthesis Enabled by Dimethyl Benziodoxoles via Dual Copper/Photoredox Catalysis. ACS Catal 2023. [DOI: 10.1021/acscatal.3c00230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Affiliation(s)
- Yuanyuan Ge
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Centre of Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Yingbo Shao
- State Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- College of Chemistry, Nankai University, Tianjin 300071, P. R. China
| | - Shuang Wu
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Centre of Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- School of Physical Science and Technology, ShanghaiTech University, 100 Haike Road, Shanghai 201210, P. R. China
| | - Pan Liu
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Centre of Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- Central China Normal University, 152 Luoyu Road, Wuhan, Hubei 430079, P. R. China
| | - Junzhao Li
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Centre of Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Hanzhang Qin
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Centre of Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- School of Chemistry and Material Sciences, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Sub-lane Xiangshan, Hangzhou 310024, P. R. China
| | - Yanxia Zhang
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Xiao-song Xue
- School of Chemistry and Material Sciences, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Sub-lane Xiangshan, Hangzhou 310024, P. R. China
- State Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
| | - Yiyun Chen
- State Key Laboratory of Bioorganic and Natural Products Chemistry, Centre of Excellence in Molecular Synthesis, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, P. R. China
- School of Physical Science and Technology, ShanghaiTech University, 100 Haike Road, Shanghai 201210, P. R. China
- School of Chemistry and Material Sciences, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Sub-lane Xiangshan, Hangzhou 310024, P. R. China
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10
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Saito T, Awad JM, Zhang W. Synthetic Studies on Tetracyclic Diquinane Lycopodium Alkaloids Magellanine, Magellaninone and Paniculatine. Molecules 2023; 28:molecules28031501. [PMID: 36771167 PMCID: PMC9920116 DOI: 10.3390/molecules28031501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Revised: 01/31/2023] [Accepted: 01/31/2023] [Indexed: 02/08/2023] Open
Abstract
(-)-Magellanine, (+)-magellaninone, and (+)-paniculatine are three natural products isolated from the Lycopodium family that share a unique 6-5-5-6-fused tetracyclic diquinane core skeleton. Several members of this family have potent s anti-inflammatory and acetylcholinesterase-inhibitory properties and are under development for the treatment of Alzheimer's and other neurodegenerative diseases. Several research groups have undertaken the formal and total syntheses of this class of natural products. This review highlights over 20 reported total syntheses of these three alkaloids and the development of synthetic methods for the assembly of their core skeletons.
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11
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Magalhães ÁF, Powner MW. Prebiotic triose glycolysis promoted by co-catalytic proline and phosphate in neutral water. Chem Commun (Camb) 2022; 58:13519-13522. [PMID: 36398592 DOI: 10.1039/d2cc05466c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Proline and phosphate promote a near-quantitative aldol reaction between glycolaldehyde phosphate and formaldehyde at neutral pH in water. Our results demonstrate the important role of general acid-base catalysis in water and underscore the essential role that amino acid catalysis may have played in early evolution of life's core metabolic pathways.
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Affiliation(s)
- Álvaro F Magalhães
- Department of Chemistry, University College London, 20 Gordon Street, London, WC1H 0AJ, UK.
| | - Matthew W Powner
- Department of Chemistry, University College London, 20 Gordon Street, London, WC1H 0AJ, UK.
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12
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Ahmed E, Cho J, Friedmann L, Jang SS, Weck M. Catalytically Active Multicompartment Micelles. JACS AU 2022; 2:2316-2326. [PMID: 36311828 PMCID: PMC9597600 DOI: 10.1021/jacsau.2c00367] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/25/2022] [Accepted: 08/26/2022] [Indexed: 06/16/2023]
Abstract
This article presents the self-assembly behavior of multicompartment micelles (MCMs) in water into morphologies with multiple segregated domains and their use as supports for aqueous catalysis. A library of poly(norbornene)-based amphiphilic bottlebrush copolymers containing covalently attached l-proline in the hydrophobic, styrene, and pentafluorostyrene domains and a poly(ethylene glycol)-containing repeat unit as the hydrophilic block have been synthesized using ring-opening metathesis polymerization. Interaction parameter (χ) values between amphiphilic blocks were determined using a Flory-Huggins-based computational model. The morphologies of the MCMs are observed via cryogenic transmission electron microscopy and modeled using dissipative particle dynamic simulations. The catalytic activities of these MCM nanoreactors were systematically investigated using the aldol addition between 4-nitrobenzaldehyde and cyclohexanone in water as a model reaction. MCMs present an ideal environment for catalysis by providing control over water content and enhancing interactions between the catalytic sites and the aldehyde substrate, thereby forming the aldol product in high yields and selectivities that is otherwise not possible under aqueous conditions. Catalyst location, block ratio, and functionality have substantial influences on micelle morphology and, ultimately, catalytic efficiency. "Clover-like" and "core-shell" micelle morphologies displayed the best catalytic activity. Our MCM-based catalytic system expands the application of these nanostructures beyond selective storage of guest molecules and demonstrates the importance of micelle morphology on catalytic activity.
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Affiliation(s)
- Eman Ahmed
- Molecular
Design Institute and Department of Chemistry, New York University, New York, New York 10003, United States
| | - Jinwon Cho
- School
of Materials Science and Engineering, Georgia
Institute of Technology, 771 Ferst Dr., Atlanta, Georgia 30332-0245, United States
| | - Lulu Friedmann
- Molecular
Design Institute and Department of Chemistry, New York University, New York, New York 10003, United States
| | - Seung Soon Jang
- School
of Materials Science and Engineering, Georgia
Institute of Technology, 771 Ferst Dr., Atlanta, Georgia 30332-0245, United States
| | - Marcus Weck
- Molecular
Design Institute and Department of Chemistry, New York University, New York, New York 10003, United States
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13
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Tsuneda T, Sumitomo H, Hasebe M, Tsutsumi T, Taketsugu T. Reactive orbital energy theory serving a theoretical foundation for the electronic theory of organic chemistry. J Comput Chem 2022; 44:93-104. [PMID: 36193762 DOI: 10.1002/jcc.27017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 09/11/2022] [Accepted: 09/14/2022] [Indexed: 11/07/2022]
Abstract
It is established that the reactive orbital energy theory (ROET) theoretically reproduces the rule-based electronic theory diagrams of organic chemistry by a comparative study on the charge transfer natures of typical organic carbon-carbon and carbon-heteroatom bond formation reactions: aldol, Mannich, α-aminooxylation, and isogyric reactions. The ROET, which is an expansion of the reaction electronic theories (e.g., the frontier orbital theory) in terms of orbital energies, elucidates the reactive orbitals driving reactions and the charge transferability indices of the reactions. Performing the ROET analyses of these reactions shows that the charge transfer directions given in the rule-based diagrams of the electronic theory are reproduced even for the functional groups of charge transfer destinations in all but only two processes for 38 reaction processes. The ROET analyses also make clear the detailed orbital-based pictures of these bond formation reactions: that is, the use of the out-of-plane antibonding π orbitals in acidic conditions (enol-mode) and in-plane antibonding π orbitals in basic conditions (enolate-mode), which explain the experimentally assumed mechanisms such as the π-bond formations in acidic conditions and σ-bond formations at α-carbons in basic conditions. Furthermore, the ROET analyses explicate that the methyl group initially accepts electrons and then donates them to the bond formations in the target reactions. It is, consequently, suggested that the ROET serves a theoretical foundation for the electronic theory of organic chemistry.
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Affiliation(s)
- Takao Tsuneda
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan.,Graduate School of Science Technology and Innovation, Kobe University, Kobe, Japan
| | - Hiroki Sumitomo
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Masatoshi Hasebe
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Japan
| | - Takuro Tsutsumi
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan.,L-Station, Creative Research Institution (CRI), Hokkaido University, Sapporo, Japan
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan.,Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Japan
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14
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Switchable aqueous catalytic systems for organic transformations. Commun Chem 2022; 5:115. [PMID: 36697818 PMCID: PMC9814960 DOI: 10.1038/s42004-022-00734-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 09/12/2022] [Indexed: 01/28/2023] Open
Abstract
In living organisms, enzyme catalysis takes place in aqueous media with extraordinary spatiotemporal control and precision. The mechanistic knowledge of enzyme catalysis and related approaches of creating a suitable microenvironment for efficient chemical transformations have been an important source of inspiration for the design of biomimetic artificial catalysts. However, in "nature-like" environments, it has proven difficult for artificial catalysts to promote effective chemical transformations. Besides, control over reaction rate and selectivity are important for smart application purposes. These can be achieved via incorporation of stimuli-responsive features into the structure of smart catalytic systems. Here, we summarize such catalytic systems whose activity can be switched 'on' or 'off' by the application of stimuli in aqueous environments. We describe the switchable catalytic systems capable of performing organic transformations with classification in accordance to the stimulating agent. Switchable catalytic activity in aqueous environments provides new possibilities for the development of smart materials for biomedicine and chemical biology. Moreover, engineering of aqueous catalytic systems can be expected to grow in the coming years with a further broadening of its application to diverse fields.
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15
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Kaku C, Suganuma S, Nakajima K, Tsuji E, Katada N. Selective hydrogenation of L‐proline to L‐prolinol over Al2O3‐supported Pt‐MoOx catalyst. ChemCatChem 2022. [DOI: 10.1002/cctc.202200399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Chinami Kaku
- Tottori University: Tottori Daigaku Center for Research on Green Sustainable Chemistry JAPAN
| | - Satoshi Suganuma
- Center for Research on Green Sustainable Chemistry Tottori University 4-101 Koyama-cho Minami 680-8552 Tottori JAPAN
| | | | - Etsushi Tsuji
- Tottori University: Tottori Daigaku Center for Research on Green Sustainable Chemistry JAPAN
| | - Naonobu Katada
- Tottori University: Tottori Daigaku Center for Research on Green Sustainable Chemistry JAPAN
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16
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Huang BB, Lei K, Zhong LR, Yang X, Yao ZJ. Unified Total Synthesis of Tetracyclic Diquinane Lycopodium Alkaloids (+)-Paniculatine, (-)-Magellanine, and (+)-Magellaninone. J Org Chem 2022; 87:8685-8696. [PMID: 35699523 DOI: 10.1021/acs.joc.2c00871] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A unified route for the total synthesis of three tetracyclic diquinane Lycopodium alkaloids (+)-paniculatine, (-)-magellanine, and (+)-magellaninone has been accomplished in 13-14 overall steps based on late-stage diverse transformations from an advanced tetracyclic common intermediate. In the established synthesis, quick formation of the two five-membered rings was efficiently achieved by an intramolecular reductive coupling of ketone-carbonyl and ester-carbonyl and an organocatalytic intramolecular Michael addition of aldehyde-derived enamine to an internal enone functionality with satisfactory redox and step economies and excellent stereoselectivities, providing the requisite tricyclic carbo-framework possessing multiple dense stereogenic centers, and an intramolecular reductive amination finally furnished the essential piperidine ring.
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Affiliation(s)
- Bing-Bing Huang
- State Key Laboratory of Coordination Chemistry, and Jiangsu Key Laboratory of Advanced Organic Materials School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Kaiyu Lei
- State Key Laboratory of Coordination Chemistry, and Jiangsu Key Laboratory of Advanced Organic Materials School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Lin-Rui Zhong
- State Key Laboratory of Coordination Chemistry, and Jiangsu Key Laboratory of Advanced Organic Materials School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Xiaoliang Yang
- State Key Laboratory of Coordination Chemistry, and Jiangsu Key Laboratory of Advanced Organic Materials School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Zhu-Jun Yao
- State Key Laboratory of Coordination Chemistry, and Jiangsu Key Laboratory of Advanced Organic Materials School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
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17
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Pasricha S, Chaudhary A, Srivastava A. Evolving Trends for C−C Bond Formation Using Functionalized Covalent Organic Frameworks as Heterogeneous Catalysts. ChemistrySelect 2022. [DOI: 10.1002/slct.202200576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sharda Pasricha
- Department of Chemistry Sri Venkateswara College University of Delhi India
| | - Ankita Chaudhary
- Department of Chemistry Maitreyi College, Bapu New Delhi 110021 India
| | - Abhay Srivastava
- Abhay Srivastava Material Research Centre Indian Institute of Science, Bangalore India
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18
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Singh SK, Mishra N, Kumar S, Jaiswal MK, Tiwari VK. Growing Impact of Carbohydrate‐Based Organocatalysts. ChemistrySelect 2022. [DOI: 10.1002/slct.202201314] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Sumit K. Singh
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi 221005 INDIA
| | - Nidhi Mishra
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi 221005 INDIA
| | - Sunil Kumar
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi 221005 INDIA
| | - Manoj K. Jaiswal
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi 221005 INDIA
| | - Vinod K. Tiwari
- Department of Chemistry Institute of Science Banaras Hindu University Varanasi 221005 INDIA
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19
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Gurka AA. New mechanistic approach in the enamine-based asymmetric organocatalysis. Struct Chem 2022. [DOI: 10.1007/s11224-022-01952-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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20
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Biesemans B, De Clercq J, Stevens CV, Thybaut JW, Lauwaert J. Recent advances in amine catalyzed aldol condensations. CATALYSIS REVIEWS 2022. [DOI: 10.1080/01614940.2022.2048570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Bert Biesemans
- Laboratory for Chemical Technology (LCT), Department of Materials, Textiles, and Chemical Engineering, Ghent University, Technologiepark 125, 9052 Ghent, Belgium
| | - Jeriffa De Clercq
- Industrial Catalysis and Adsorption Technology (INCAT), Department of Materials, Textiles, and Chemical Engineering, Ghent University, Valentin Vaerwyckweg 1, 9000 Ghent, Belgium
| | - Christian V. Stevens
- SynBioC Research Group, Department of Green Chemistry and Technology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Joris W. Thybaut
- Laboratory for Chemical Technology (LCT), Department of Materials, Textiles, and Chemical Engineering, Ghent University, Technologiepark 125, 9052 Ghent, Belgium
| | - Jeroen Lauwaert
- Industrial Catalysis and Adsorption Technology (INCAT), Department of Materials, Textiles, and Chemical Engineering, Ghent University, Valentin Vaerwyckweg 1, 9000 Ghent, Belgium
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21
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Abstract
In the past two decades, metal-organic frameworks (MOFs) or porous coordination polymers (PCPs) assembled from metal ions or clusters and organic linkers via metal-ligand coordination bonds have captivated significant scientific interest on account of their high crystallinity, exceptional porosity, and tunable pore size, high modularity, and diverse functionality. The opportunity to achieve functional porous materials by design with promising properties, unattainable for solid-state materials in general, distinguishes MOFs from other classes of materials, in particular, traditional porous materials such as activated carbon, silica, and zeolites, thereby leading to complementary properties. Scientists have conducted intense research in the production of chiral MOF (CMOF) materials for specific applications including but not limited to chiral recognition, separation, and catalysis since the discovery of the first functional CMOF (i.e., d- or l-POST-1). At present, CMOFs have become interdisciplinary between chirality chemistry, coordination chemistry, and material chemistry, which involve in many subjects including chemistry, physics, optics, medicine, pharmacology, biology, crystal engineering, environmental science, etc. In this review, we will systematically summarize the recent progress of CMOFs regarding design strategies, synthetic approaches, and cutting-edge applications. In particular, we will highlight the successful implementation of CMOFs in asymmetric catalysis, enantioselective separation, enantioselective recognition, and sensing. We envision that this review will provide readers a good understanding of CMOF chemistry and, more importantly, facilitate research endeavors for the rational design of multifunctional CMOFs and their industrial implementation.
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Affiliation(s)
- Wei Gong
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai 200240, P.R. China
| | - Zhijie Chen
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai 200240, P.R. China
| | - Jinqiao Dong
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai 200240, P.R. China
| | - Yan Liu
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai 200240, P.R. China
| | - Yong Cui
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules and State Key Laboratory of Metal Matrix Composites, Shanghai Jiao Tong University, Shanghai 200240, P.R. China
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22
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Betzenbichler G, Huber L, Kräh S, Morkos MLK, Siegle AF, Trapp O. Chiral stationary phases and applications in gas chromatography. Chirality 2022; 34:732-759. [PMID: 35315953 DOI: 10.1002/chir.23427] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Revised: 02/06/2022] [Accepted: 02/07/2022] [Indexed: 12/15/2022]
Abstract
Chiral compounds are ubiquitous in nature and play a pivotal role in biochemical processes, in chiroptical materials and applications, and as chiral drugs. The analysis and determination of the enantiomeric ratio (er) of chiral compounds is of enormous scientific, industrial, and economic importance. Chiral separation techniques and methods have become indispensable tools to separate chiral compounds into their enantiomers on an analytical as well on a preparative level to obtain enantiopure compounds. Chiral gas chromatography and high-performance liquid chromatography have paved the way and fostered several research areas, that is, asymmetric synthesis and catalysis in organic, medicinal, pharmaceutical, and supramolecular chemistry. The development of highly enantioselective chiral stationary phases was essential. In particular, the elucidation and understanding of the underlying enantioselective supramolecular separation mechanisms led to the design of new chiral stationary phases. This review article focuses on the development of chiral stationary phases for gas chromatography. The fundamental mechanisms of the recognition and separation of enantiomers and the selectors and chiral stationary phases used in chiral gas chromatography are presented. An overview over syntheses and applications of these chiral stationary phases is presented as a practical guidance for enantioselective separation of chiral compound classes and substances by gas chromatography.
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Affiliation(s)
| | - Laura Huber
- Department of Chemistry, Ludwig-Maximilians-University Munich, Munich, Germany
| | - Sabrina Kräh
- Department of Chemistry, Ludwig-Maximilians-University Munich, Munich, Germany
| | | | - Alexander F Siegle
- Department of Chemistry, Ludwig-Maximilians-University Munich, Munich, Germany
| | - Oliver Trapp
- Department of Chemistry, Ludwig-Maximilians-University Munich, Munich, Germany
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23
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Yum JH, Sugiyama H, Park S. Harnessing DNA as a Designable Scaffold for Asymmetric Catalysis: Recent Advances and Future Perspectives. CHEM REC 2022; 22:e202100333. [PMID: 35312235 DOI: 10.1002/tcr.202100333] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/03/2022] [Accepted: 03/04/2022] [Indexed: 12/27/2022]
Abstract
Since the first report of DNAzyme by in vitro selection in 1994, catalytic DNA has investigated extensively, and their application has expanded continually in virtue of rapid advances in molecular biology and biotechnology. Nowadays, DNA is in the second prime time by way of DNA-based hybrid catalysts and DNA metalloenzymes in which helical chirality of DNA serves to asymmetric catalysis. DNA-based hybrid catalysts are attractive system to respond the demand of the times to pursuit green and sustainable society beyond traditional catalytic systems that value reaction efficiency. Herein, we highlight the recent advances and perspective of DNA-based hybrid catalysts with various aspects of DNA as a versatile scaffold for asymmetric synthesis. We hope that scientists in a variety of fields will be encouraged to join and promote remarkable evolution of this interesting research.
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Affiliation(s)
- Ji Hye Yum
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto, 606-8502, Japan.,Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Soyoung Park
- Immunology Frontier Research Center (iFReC), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan.,Research Institute for Microbial Diseases (RIMD), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan
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24
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Lee HJ, Maruoka K. Design of Bifunctional Amino Tf-Amide Organocatalysts and Application in Various Asymmetric Transformations. CHEM REC 2022; 22:e202200004. [PMID: 35179310 DOI: 10.1002/tcr.202200004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 02/01/2022] [Accepted: 02/02/2022] [Indexed: 11/08/2022]
Abstract
In this personal account, we describe our recent developments on the four types of amino Tf-amide catalysts in asymmetric transformations. Firstly, axially chiral biaryl-based secondary-amino Tf-amide catalyzed various stereoselective reactions via enamine intermediates. Secondly, pyrrolidine-based secondary-amino aliphatic Tf-amide catalyzed asymmetric direct Mannich reaction. Thirdly, chiral primary-amino aliphatic Tf-amide catalyzed asymmetric direct aldol reaction and conjugate addition. Finally, modified chiral amino aromatic Tf-amide catalyzed asymmetric transformations. These four different strategies are illustrated by using various organocatalyzed asymmetric transformations.
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Affiliation(s)
- Hyo-Jun Lee
- Department of Chemistry, Kunsan National University, Gunsan, 54150, Republic of Korea
| | - Keiji Maruoka
- Graduate School of Pharmaceutical Sciences, Kyoto University Sakyo, Kyoto, 606-8501, Japan.,School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou, 510006, China
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25
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Homma C, Kano T. Design and Synthesis of Phenylcyclopropane-based Chiral Amine Catalysts and Their Application in Asymmetric Reactions. J SYN ORG CHEM JPN 2022. [DOI: 10.5059/yukigoseikyokaishi.80.92] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Taichi Kano
- Department of Applied Chemistry, Tokyo University of Agriculture and Technology
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26
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Cukrowski I, Dhimba G, Riley DL. A Molecular-Wide and Electron Density-Based Approach in Exploring Chemical Reactivity and Explicit Dimethyl Sulfoxide (DMSO) Solvent Molecule Effects in the Proline Catalyzed Aldol Reaction. Molecules 2022; 27:molecules27030962. [PMID: 35164227 PMCID: PMC8839911 DOI: 10.3390/molecules27030962] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 01/19/2022] [Accepted: 01/24/2022] [Indexed: 02/05/2023] Open
Abstract
Modelling of the proline (1) catalyzed aldol reaction (with acetone 2) in the presence of an explicit molecule of dimethyl sulfoxide (DMSO) (3) has showed that 3 is a major player in the aldol reaction as it plays a double role. Through strong interactions with 1 and acetone 2, it leads to a significant increase of energy barriers at transition states (TS) for the lowest energy conformer 1a of proline. Just the opposite holds for the higher energy conformer 1b. Both the ‘inhibitor’ and ‘catalyst’ mode of activity of DMSO eliminates 1a as a catalyst at the very beginning of the process and promotes the chemical reactivity, hence catalytic ability of 1b. Modelling using a Molecular-Wide and Electron Density-based concept of Chemical Bonding (MOWED-CB) and the Reaction Energy Profile–Fragment Attributed Molecular System Energy Change (REP-FAMSEC) protocol has shown that, due to strong intermolecular interactions, the HN-C-COOH (of 1), CO (of 2), and SO (of 3) fragments drive a chemical change throughout the catalytic reaction. We strongly advocate exploring the pre-organization of molecules from initially formed complexes, through local minima to the best structures suited for a catalytic process. In this regard, a unique combination of MOWED-CB with REP-FAMSEC provides an invaluable insight on the potential success of a catalytic process, or reaction mechanism in general. The protocol reported herein is suitable for explaining classical reaction energy profiles computed for many synthetic processes.
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27
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Kamanna K. Organocatalysts based on natural and modified amino acids for asymmetric reactions. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Small organic molecules predominantly containing C, H, O, N, S and P element are found promising molecule to accelerate chemical reactions and are named organocatalysis. In addition, these organocatalysts are easy availability, stable in water and air, inexpensive, and low toxicity, which confer a huge direct application in organic synthesis when compared to transition metal catalyzed reactions and becoming powerful tools in the construction of a selective chiral product. Interest on organocatalysis is spectacularly increased since last two decades, due to the novelty of the concept and selectivity. Based on the nature of the organocatalysts used, they are classified in to four major classes, among them one of the types is amino acids derived organocatalysts. Natural amino acids are playing important role in building blocks of protein construction, and also intermediate products of the metabolism. α-Amino acid is a molecule, that contains both amine and carboxyl functional group. Their particular structural characteristic determines their role in protein synthesis, and bifunctional asymmetric catalysts for stereoselective synthesis. Two functional groups present on a single carbon acting as an acid and base, which promote chemical transformations in concert similar to the enzymatic catalysis. The post translational derivatives of natural α-amino acids include 4-hydroxy-L-proline and 4-amino-L-proline scaffolds, and its synthetic variants based organocatalysts, whose catalytic activity is well documented. This chapter discussed past and present development of the organocatalysts derived from natural and modified amino acids for various important organic transformations reviewed.
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Affiliation(s)
- Kantharaju Kamanna
- Department of Chemistry , Rani Channamma University , Vidyasangama , P-B, NH-4 , Belagavi 591156 , Karnataka , India
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28
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Shajahan R, Sarang R, Saithalavi A. Polymer Supported Proline-Based Organocatalysts in Asymmetric Aldol Reactions: A Review. CURRENT ORGANOCATALYSIS 2022. [DOI: 10.2174/2213337209666220112094231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The use of proline-based organocatalysts has acquired significant importance in organic synthesis, especially in enantioselective synthesis. Proline and its derivatives are proven to be quite effective chiral organocatalysts for a variety of transformations including the aldol reaction, which is considered as one of the important C-C bond forming reactions in organic synthesis. The use of chiral organocatalysts has several advantages over its metal-mediated analogues. Subsequently, a large number of highly efficient proline-based organocatalysts including polymer-supported chiral analogues have been identified for aldol reaction. The use of polymer-supported organocatalysts exhibited remarkable stability under the reaction conditions and offered the best results particularly in terms of its recyclability and reusability. These potential benefits along with its economic and green chemistry advantages have led to the search for many polymer-supported proline catalysts. In this review, recent developments in exploring various polymer immobilized proline-based chiral organocatalysts for asymmetric aldol reactions are described.
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Affiliation(s)
- Rubina Shajahan
- School of Chemical Sciences, Mahatma Gandhi University, Kottayam, Kerala, India-686560
| | - Rithwik Sarang
- Institute for Integrated Programmes and Research in Basic Sciences (IIRBS), Mahatma Gandhi University, Kottayam, Kerala, India-686560
| | - Anas Saithalavi
- School of Chemical Sciences, Mahatma Gandhi University, Kottayam, Kerala, India-686560
- Institute for Integrated Programmes and Research in Basic Sciences (IIRBS), Mahatma Gandhi University, Kottayam, Kerala, India-686560
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29
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Chiral Ionic Liquids Based on l-Cysteine Derivatives for Asymmetric Aldol Reaction. Catalysts 2022. [DOI: 10.3390/catal12010047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Structure, and consequently properties, of ionic liquids can be easily tailored by changing cation/anion combinations and/or attaching functional groups. By grafting enantiopure moieties to the framework of ionic liquid it is possible to prepare bioinspired chiral molecules that can serve as a reaction medium, additive or even asymmetric catalyst. In this context, new chiral ionic liquids (CILs), based on biomolecules, such as aminoacids (l-Cysteine derivatives), have been synthesised and tested in asymmetric aldol condensation of aldehydes and ketones. The best results were obtained for CILs composed of S-methyl-l-cysteine cation and bis(trifluoromethane)sulfonimide anion, in the reaction of 2- or 4-nitrobenzaldehyde with acetone or cyclohexanone, giving the aldol product in moderate yields 70–76% and high ee values (up to 96%).
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30
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M VNUM, Faidh MA, Chadha A. The ornithine cyclodeaminase/µ-crystallin superfamily of proteins: A novel family of oxidoreductases for the biocatalytic synthesis of chiral amines. CURRENT RESEARCH IN BIOTECHNOLOGY 2022. [DOI: 10.1016/j.crbiot.2022.09.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022] Open
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31
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Affiliation(s)
- Shaomin Fu
- Key Laboratory of Green Chemistry & Technology of Ministry of Education, College of Chemistry, Sichuan University 29 Wangjiang Rd Chengdu Sichuan 610064 China
| | - Bo Liu
- Key Laboratory of Green Chemistry & Technology of Ministry of Education, College of Chemistry, Sichuan University 29 Wangjiang Rd Chengdu Sichuan 610064 China
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32
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Gujjarappa R, Vodnala N, Musib D, Malakar CC. Organocatalytic Decarboxylation and Dual C(sp
3
)−H Bond Functionalization Toward Facile Access to Divergent 2,6‐Diarylpyridines. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Raghuram Gujjarappa
- Department of Chemistry National Institute of Technology Manipur Langol Imphal 795004 Manipur India
| | - Nagaraju Vodnala
- Department of Chemistry National Institute of Technology Manipur Langol Imphal 795004 Manipur India
- Department of Chemistry Indian Institute of Technology Delhi Multi-storey building, HauzKhas New Delhi 110016 India
| | - Dulal Musib
- Department of Chemistry National Institute of Technology Manipur Langol Imphal 795004 Manipur India
| | - Chandi C. Malakar
- Department of Chemistry National Institute of Technology Manipur Langol Imphal 795004 Manipur India
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33
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Komine K, Ninomiya R, Fukuda H, Ishihara J. A Stereoselective Synthesis of Fused Carbocycles with a cis-1,2-Diol Moiety by Desymmetrization: SmI 2-mediated Pinacol Coupling of meso-Cyclic 1,3-Diones. Chem Pharm Bull (Tokyo) 2021; 70:89-93. [PMID: 34732589 DOI: 10.1248/cpb.c21-00837] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
SmI2-mediated desymmetrization of a meso-cyclic 1,3-dione pinacol coupling is described. The reaction proceeds with high stereoselectivity to provide fused carbocyclic compounds with three contiguous stereogenic centers featuring an all-carbon quaternary center and a cis-1,2-diol moiety.
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Affiliation(s)
- Keita Komine
- Graduate School of Biomedical Sciences, Nagasaki University
| | - Riki Ninomiya
- Graduate School of Biomedical Sciences, Nagasaki University
| | - Hayato Fukuda
- Graduate School of Biomedical Sciences, Nagasaki University
| | - Jun Ishihara
- Graduate School of Biomedical Sciences, Nagasaki University
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34
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Sheng Q, Wu XY, Xu X, Tan X, Li Z, Zhang B. Production of l-glutamate family amino acids in Corynebacterium glutamicum: Physiological mechanism, genetic modulation, and prospects. Synth Syst Biotechnol 2021; 6:302-325. [PMID: 34632124 PMCID: PMC8484045 DOI: 10.1016/j.synbio.2021.09.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 08/30/2021] [Accepted: 09/08/2021] [Indexed: 11/19/2022] Open
Abstract
l-glutamate family amino acids (GFAAs), consisting of l-glutamate, l-arginine, l-citrulline, l-ornithine, l-proline, l-hydroxyproline, γ-aminobutyric acid, and 5-aminolevulinic acid, are widely applied in the food, pharmaceutical, cosmetic, and animal feed industries, accounting for billions of dollars of market activity. These GFAAs have many functions, including being protein constituents, maintaining the urea cycle, and providing precursors for the biosynthesis of pharmaceuticals. Currently, the production of GFAAs mainly depends on microbial fermentation using Corynebacterium glutamicum (including its related subspecies Corynebacterium crenatum), which is substantially engineered through multistep metabolic engineering strategies. This review systematically summarizes recent advances in the metabolic pathways, regulatory mechanisms, and metabolic engineering strategies for GFAA accumulation in C. glutamicum and C. crenatum, which provides insights into the recent progress in l-glutamate-derived chemical production.
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Affiliation(s)
- Qi Sheng
- Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China
| | - Xiao-Yu Wu
- Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China
| | - Xinyi Xu
- Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China
| | - Xiaoming Tan
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, 430062, China
| | - Zhimin Li
- Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, 430062, China
- Corresponding author. Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China.
| | - Bin Zhang
- Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China
- Corresponding author. Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, College of Bioscience and Bioengineering, Jiangxi Agricultural University, Nanchang, 330045, China.
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35
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Valapil DG, Kadagathur M, Shankaraiah N. Stereoselective Aldol and Conjugate Addition Reactions Mediated by Proline‐Based Catalysts and Its Analogues: A Concise Review. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100945] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Durgesh Gurukkala Valapil
- Department of Medicinal Chemistry National Institute of Pharmaceutical Education and Research (NIPER) Hyderabad 500037 India
| | - Manasa Kadagathur
- Department of Medicinal Chemistry National Institute of Pharmaceutical Education and Research (NIPER) Hyderabad 500037 India
| | - Nagula Shankaraiah
- Department of Medicinal Chemistry National Institute of Pharmaceutical Education and Research (NIPER) Hyderabad 500037 India
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36
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Shao L, Huo Z, Lei N, Yang M, He Z, Zhang Y, Wei Q, Chen C, Xiao M, Wang F, Gu G, Cai F. Reinvestigation of N, N-Diacetylimido-Protected 2-Aminothioglycosides in O-Glycosylation: Intermolecular Hydrogen Bonds Contributing to 1,2-Orthoamide Formation. J Org Chem 2021; 86:13212-13230. [PMID: 34533021 DOI: 10.1021/acs.joc.1c01009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
N,N-Diacetylimido protection of 2-aminoglycosides is an elegant strategy but has had limited applications due to unexpected side reactions in glycosylation. We found that high acid concentrations could diminish the side reactions. We observed intermolecular hydrogen bonding among alcohols and acids could disrupt. Assuming that intermolecular hydrogen bonding accelerates the formation of 1,2-orthoamides and disrupting intermolecular hydrogen bonds could turn to the desired glycosylation, we successfully employed sulfenyl triflate pre-activation in the glycosylation of a broad scope of alcohol acceptors, as well as in a one-pot synthesis of a protected human milk oligosaccharide, lacto-N-neotetraose.
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Affiliation(s)
- Liming Shao
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Zhenni Huo
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Na Lei
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Min Yang
- Center for Analysis and Characterization, School of Physical Science and Technology, ShanghaiTech University, 393 Huaxia Middle Rd., Shanghai 201210, China
| | - Zehuan He
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Yongliang Zhang
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Qinlong Wei
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Changsheng Chen
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Mei Xiao
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Fei Wang
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Guofeng Gu
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Feng Cai
- National Glycoengineering Research Center and Shandong Provincial Key Laboratory of Carbohydrate Chemistry and Glycobiology, Shandong University, 72 Binhai Road, Qingdao 266237, China
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37
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Abstract
Organocatalysts are abundantly used for various transformations, particularly to obtain highly enantio- and diastereomeric pure products by controlling the stereochemistry. These applications of organocatalysts have been the topic of several reviews. Organocatalysts have emerged as one of the very essential areas of research due to their mild reaction conditions, cost-effective nature, non-toxicity, and environmentally benign approach that obviates the need for transition metal catalysts and other toxic reagents. Various types of organocatalysts including amine catalysts, Brønsted acids, and Lewis bases such as N-heterocyclic carbene (NHC) catalysts, cinchona alkaloids, 4-dimethylaminopyridine (DMAP), and hydrogen bond-donating catalysts, have gained renewed interest because of their regioselectivity. In this review, we present recent advances in regiodivergent reactions that are governed by organocatalysts. Additionally, we briefly discuss the reaction pathways of achieving regiodivergent products by changes in conditions such as solvents, additives, or the temperature.
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38
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Abstract
Abstract
During the last 20 years, organocatalysis has significantly advanced as a field. Thanks to contributions from hundreds of groups and companies around the world, the area has risen from a few mechanistically ill-defined niche reactions, to one of the most vibrant and innovative fields in chemistry, providing several well-defined generic activation modes for selective catalysis. Organocatalysis is also on the rise in industrial settings, especially for the production of enantiomers, which are of use in fine chemistry, pharma, crop-protection, and fragrance chemistry. Here we will look at some of the specific elements of organocatalysis that we think are particularly attractive and contribute to this successful development.
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Affiliation(s)
- Miles H. Aukland
- Max-Planck-Institut für Kohlenforschung , Mulheim an der Ruhr , Germany
| | - Benjamin List
- Max-Planck-Institut für Kohlenforschung , Mulheim an der Ruhr , Germany
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39
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Abstract
Density functional theory (DFT) has been employed in predicting the enantioselectivity of the aldol reaction between acetone and p-nitrobenzaldehyde catalyzed by proline and its derivatives Me2bdc-Pro (bdc = 1,4-benzenedicarboxylate) and Me2bpdc-Pro (bpdc = 4,4'-biphenyldicarboxylate). For each catalyst, our computationally predicted values at the M062X/6-31+G(d) level of theory with the SMD solvent model are in excellent agreement with experimental results reported in the literature. Electron-donating and electron-withdrawing groups (viz., SO3-, NMe2, SO3H, and NMe3+) were installed at the C4 position of the proline-based catalysts to study the impact of electrostatic effects on stereoselectivity. The electron-donating groups decrease and even invert the enantioselectivity, while the electron-withdrawing ones increase it. Enantiomeric excesses in the range of 49-71 and 59-68% are predicted for Me2bdc-Pro and Me2bpdc-Pro catalysts with the electron-withdrawing SO3H and NMe3+ installed respectively, values much higher than those of the corresponding unmodified catalysts. More interestingly, enantiomeric excesses decrease and, in the case of SO3-, are even inverted in favor of the other enantiomer when the electron-donating groups are installed. These results highlight the importance of electrostatic effects, and polar effects more generally, in optimal organocatalyst design for stereoselective C-C bond-forming reactions.
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Affiliation(s)
- Li-Juan Yu
- ARC Centre of Excellence for Electromaterials Science, Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
| | - Michelle L Coote
- ARC Centre of Excellence for Electromaterials Science, Research School of Chemistry, Australian National University, Canberra, Australian Capital Territory 2601, Australia
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40
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Debnath MK, Oyama W, Ono Y, Sugimoto T, Watanabe R, Haraguchi N. Synthesis of polymer microsphere‐supported chiral pyrrolidine catalysts by precipitation polymerization and their application to asymmetric Michael addition reactions. JOURNAL OF POLYMER SCIENCE 2021. [DOI: 10.1002/pol.20210128] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Mithun Kumar Debnath
- Department of Applied Chemistry and Life Science, Graduate School of Engineering Toyohashi University of Technology Toyohashi Japan
| | - Wako Oyama
- Department of Applied Chemistry and Life Science, Graduate School of Engineering Toyohashi University of Technology Toyohashi Japan
| | - Yuya Ono
- Department of Applied Chemistry and Life Science, Graduate School of Engineering Toyohashi University of Technology Toyohashi Japan
| | - Takuya Sugimoto
- Department of Applied Chemistry and Life Science, Graduate School of Engineering Toyohashi University of Technology Toyohashi Japan
| | - Rina Watanabe
- Department of Applied Chemistry and Life Science, Graduate School of Engineering Toyohashi University of Technology Toyohashi Japan
| | - Naoki Haraguchi
- Department of Applied Chemistry and Life Science, Graduate School of Engineering Toyohashi University of Technology Toyohashi Japan
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41
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Mahato CK, Mukherjee S, Kundu M, Vallapure VP, Pramanik A. Asymmetric 1,4-Michael Addition in Aqueous Medium Using Hydrophobic Chiral Organocatalysts. J Org Chem 2021; 86:5213-5226. [PMID: 33764066 DOI: 10.1021/acs.joc.1c00124] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Organic transformations exclusively in water as an environmentally friendly and safe medium have drawn significant interest in the recent years. Moreover, transition metal-free synthesis of enantiopure molecules in water will have a great deal of attention as the system will mimic the natural enzymatic reactions. In this work, a new set of proline-derived hydrophobic organocatalysts have been synthesized and utilized for asymmetric Michael reactions in water as the sole reaction medium. Among the various catalysts screened, the catalyst 1 is indeed efficient for stereoselective 1,4-conjugated Michael additions (dr: >97:3, ee up to >99.9%) resulting in high chemical yields (up to 95%) in a very short reaction time (1 h) at room temperature. This methodology provides a robust, green, and convenient protocol and can thus be an important addition to the arsenal of the asymmetric Michael addition reaction. Upon successful implementation, the present strategy also led to the formation of an optically active octahydroindole, the key component found in many natural products.
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Affiliation(s)
- Chandan K Mahato
- TCG Lifesciences Pvt. Limited, BN-7, Sector V, Salt Lake City, Kolkata 700091, India.,Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Sayan Mukherjee
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Mrinalkanti Kundu
- TCG Lifesciences Pvt. Limited, BN-7, Sector V, Salt Lake City, Kolkata 700091, India
| | - Virbhadra P Vallapure
- TCG Lifesciences Pvt. Limited, BN-7, Sector V, Salt Lake City, Kolkata 700091, India
| | - Animesh Pramanik
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
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42
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Kamanna K. Amino Acids and Peptides Organocatalysts: A Brief Overview on Its Evolution and Applications in Organic Asymmetric Synthesis. CURRENT ORGANOCATALYSIS 2021. [DOI: 10.2174/2213337207999201117093848] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This review highlights the application of biopolymers of natural α-amino acids and its
derived wild-type peptides employed as organocatalysts for the asymmetric synthesis of various important
compounds published by researchers across the globe. The α-amino acid with L-configuration
is available commercially in the pure form and plays a crucial role in enantioselective chiral
molecule synthesis. Out of twenty natural amino acids, only one secondary amine-containing proline
amino acid exhibited revolution in the field of organocatalysis because of its rigid structure
and the formation of an imine like transition state during the reaction, which leads to more stereoselectivity.
Hence, it is referred to as a simple enzyme in organocatalyst. Chiral enantioselective organic
molecule synthesis has been further discussed by employing oligopeptides derived from the
natural amino acids as a robust biocatalyst that replaced enzyme catalysts. The di-, tri, tetra-,
penta- and oligopeptide derived from the natural amino acids are demonstrated as a potential
organocatalyst, whose catalytic activity and mechanistic pathways are reviewed in the present paper.
Several choices of organocatalyst are developed to achieve a facile and efficient stereoselective
synthesis of many complex natural products with optically pure isomer. Subsequently, the researcher
developed green and sustainable heterogeneous catalytic system containing organocatalyst
immobilized onto solid inorganic support or porous material for accelerating reaction rate with
asymmetric one isomer product through the heterogeneous phase. Further, researchers developed
heterogeneous organocatalysts-Metal-Organic Frameworks (MOFs) that emerged as alternative
simple and facile heterogeneous catalysts for the bulk production and flow reactor for enantioselective
synthesis. This review compiled many outstanding discoveries in organocatalysts derivative of
amino acids, peptides and heterogenized-MOFs employed for many organic transformations in research
and industrial applications.
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Affiliation(s)
- Kantharaju Kamanna
- Department of Chemistry, Peptide and Medicinal Chemistry Research Laboratory, Rani Channamma University, Vidyasangama, P-B, NH-4, Belagavi -591156, Karnataka, India
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43
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Demirbas N, Demirbas A. Organocatalyzed Heterocyclic Transformations In Green Media: A Review. CURRENT ORGANOCATALYSIS 2021. [DOI: 10.2174/2213337207999200805115813] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Background:
Since the discovery of metal-free catalysts or organocatalysts about twenty
years ago, a number of small molecules with different structures have been used to accelerate organic
transformations. With the development of environmental awareness, to obtain highly efficient
scaffolds, scientists have directed their studies towards synthetic methodologies that minimize
or preferably eliminate the formation of waste, avoid toxic solvents and reagents and use renewable
starting materials as far as possible.
Methods:
In this connection, the organocatalytic reactions providing efficiency and selectivity for
most of the transformations have become an endless topic in organic chemistry since several advantages
from both practical and environmental standpoints. Organocatalysts contributing to the transformation
of reactants into products with the least possible waste production, have been serving the
concept of green chemistry.
Results and Conclusion:
Organocatalysts have been classified based on their binding capacity to
the substrate with covalent or noncovalent interactions involving hydrogen bonding and electrostatic
interaction. Diverse types of small organic compounds including proline and its derivatives,
phase-transfer catalysts, (thio)urease, phosphoric acids, sulfones, N-oxides, guanidines, cinchona
derivatives, aminoindanol, and amino acids have been utilized as hydrogen bonding organocatalysts
in different chemical transformations.
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Affiliation(s)
- Neslihan Demirbas
- Karadeniz Technical University, Department of Chemistry, 61080 Trabzon, Turkey
| | - Ahmet Demirbas
- Karadeniz Technical University, Department of Chemistry, 61080 Trabzon, Turkey
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44
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Gómez‐Martínez M, del Carmen Pérez‐Aguilar M, Piekarski DG, Daniliuc CG, García Mancheño O. N,N-Dialkylhydrazones as Versatile Umpolung Reagents in Enantioselective Anion-Binding Catalysis. Angew Chem Int Ed Engl 2021; 60:5102-5107. [PMID: 33306858 PMCID: PMC7986925 DOI: 10.1002/anie.202013380] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2020] [Indexed: 12/31/2022]
Abstract
An enantioselective anion-binding organocatalytic approach with versatile N,N-dialkylhydrazones (DAHs) as polarity-reversed (umpolung) nucleophiles is presented. For the application of this concept, a highly ordered hydrogen-bond (HB) network between a carefully selected CF3 -substituted triazole-based multidentate HB-donor catalyst, the ionic substrate and the hydrazone in a supramolecular chiral ion-pair complex was envisioned. The formation of such a network was further supported by both experimental and computational studies, which showed the crucial role of the anion as a template unit. The asymmetric Reissert-type reaction of quinolines as a model test reaction chemoselectively delivered highly enantiomerically enriched hydrazones (up 95:5 e.r.) that could be further derivatized to value-added compounds with up to three stereocenters.
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Affiliation(s)
| | | | - Dariusz G. Piekarski
- Organic Chemistry InstituteMünster UniversityCorrensstrasse 36MünsterGermany
- Current affiliation: Institute of Physical ChemistryPolish Academy of SciencesKasprzaka 44/52, 01-224WarsawPoland
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45
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Gómez‐Martínez M, Carmen Pérez‐Aguilar M, Piekarski DG, Daniliuc CG, García Mancheño O. N
,
N
‐Dialkylhydrazones as Versatile Umpolung Reagents in Enantioselective Anion‐Binding Catalysis. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202013380] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
| | | | - Dariusz G. Piekarski
- Organic Chemistry Institute Münster University Corrensstrasse 36 Münster Germany
- Current affiliation: Institute of Physical Chemistry Polish Academy of Sciences Kasprzaka 44/52, 01-224 Warsaw Poland
| | | | - Olga García Mancheño
- Organic Chemistry Institute Münster University Corrensstrasse 36 Münster Germany
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46
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Northrup JD, Wiener JA, Hurley MFD, Hou CFD, Keller TM, Baxter RHG, Zdilla MJ, Voelz VA, Schafmeister CE. Metal-Binding Q-Proline Macrocycles. J Org Chem 2021; 86:4867-4876. [PMID: 33635647 DOI: 10.1021/acs.joc.1c00116] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
We introduce the efficient Fmoc-SPPS and peptoid synthesis of Q-proline-based, metal-binding macrocycles (QPMs), which bind metal cations and display nine functional groups. Metal-free QPMs are disordered, evidenced by NMR and a crystal structure of QPM-3 obtained through racemic crystallization. Upon addition of metal cations, QPMs adopt ordered structures. Notably, the addition of a second functional group at the hydantoin amide position (R2) converts the proline ring from Cγ-endo to Cγ-exo, due to steric interactions.
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Affiliation(s)
- Justin D Northrup
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States.,ThirdLaw Molecular, 512 Township Line Road, Blue Bell, Pennsylvania 19422, United States
| | - Jesse A Wiener
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States
| | - Matthew F D Hurley
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States
| | - Chun-Feng David Hou
- Department of Medical Genetics & Molecular Biochemistry, Lewis Katz School of Medicine, Temple University, 3440 North Broad Street, Philadelphia Pennsylvania 19140, United States
| | - Taylor M Keller
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States
| | - Richard H G Baxter
- Department of Medical Genetics & Molecular Biochemistry, Lewis Katz School of Medicine, Temple University, 3440 North Broad Street, Philadelphia Pennsylvania 19140, United States
| | - Michael J Zdilla
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States
| | - Vincent A Voelz
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States
| | - Christian E Schafmeister
- Department of Chemistry, Temple University, 1901 North 13th Street, Philadelphia, Pennsylvania 19122, United States.,ThirdLaw Molecular, 512 Township Line Road, Blue Bell, Pennsylvania 19422, United States
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47
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Yadav MB, Lim KT, Kim JS, Jeong YT. One-pot four-component synthesis of methyl 4-(4-chlorophenyl)-5,7-dioxo-1-phenyl-1,4,5,6,7,8-hexahydropyrazolo [4′,3′:5,6] pyrano [2,3-d] pyrimidine-3-carboxylate; a green approach. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2020.152754] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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48
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Di H, Liu Y, Ma Y, Yang X, Jin H, Zhang L. Recent Advances in Organocatalytic Asymmetric Synthesis of 3,4-Dihydropyran-2-ones and 3,4-Dihydropyridin-2-ones. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202010039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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49
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Yoshida Y, Kasuya R, Mino T, Sakamoto M. Phase-transfer catalysed asymmetric synthesis of α-chiral tetrasubstituted α-aminothioesters. Org Biomol Chem 2021; 19:6402-6406. [PMID: 34100506 DOI: 10.1039/d1ob00829c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Chiral amino thioesters are important scaffolds owing to their widespread use in organic synthesis and biosynthesis. Despite their usefulness, their asymmetric synthesis, especially the catalytic asymmetric synthesis of α-chiral tetrasubstituted α-aminothioesters, is limited, with only one example reported so far. Herein, we report the first phase-transfer catalysed asymmetric synthesis of α-chiral tetrasubstituted α-aminothioesters to afford the corresponding products in up to 81% ee.
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Affiliation(s)
- Yasushi Yoshida
- Molecular Chirality Research Center, Graduate School of Engineering, Chiba University, 1-33, Yayoi-cho, Inage-ku, Chiba-shi, Chiba 263-8522, Japan.
| | - Reina Kasuya
- Molecular Chirality Research Center, Graduate School of Engineering, Chiba University, 1-33, Yayoi-cho, Inage-ku, Chiba-shi, Chiba 263-8522, Japan.
| | - Takashi Mino
- Molecular Chirality Research Center, Graduate School of Engineering, Chiba University, 1-33, Yayoi-cho, Inage-ku, Chiba-shi, Chiba 263-8522, Japan.
| | - Masami Sakamoto
- Molecular Chirality Research Center, Graduate School of Engineering, Chiba University, 1-33, Yayoi-cho, Inage-ku, Chiba-shi, Chiba 263-8522, Japan.
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50
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Abstract
Laccases are multicopper oxidases, which have been widely investigated in recent decades thanks to their ability to oxidize organic substrates to the corresponding radicals while producing water at the expense of molecular oxygen. Besides their successful (bio)technological applications, for example, in textile, petrochemical, and detoxifications/bioremediations industrial processes, their synthetic potentialities for the mild and green preparation or selective modification of fine chemicals are of outstanding value in biocatalyzed organic synthesis. Accordingly, this review is focused on reporting and rationalizing some of the most recent and interesting synthetic exploitations of laccases. Applications of the so-called laccase-mediator system (LMS) for alcohol oxidation are discussed with a focus on carbohydrate chemistry and natural products modification as well as on bio- and chemo-integrated processes. The laccase-catalyzed Csp2-H bonds activation via monoelectronic oxidation is also discussed by reporting examples of enzymatic C-C and C-O radical homo- and hetero-couplings, as well as of aromatic nucleophilic substitutions of hydroquinones or quinoids. Finally, the laccase-initiated domino/cascade synthesis of valuable aromatic (hetero)cycles, elegant strategies widely documented in the literature across more than three decades, is also presented.
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