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Bosveli A, Griboura N, Kampouropoulos I, Kalaitzakis D, Montagnon T, Vassilikogiannakis G. The Rapid Synthesis of Colibactin Warhead Model Compounds Using New Metal-Free Photocatalytic Cyclopropanation Reactions Facilitates the Investigation of Biological Mechanisms. Chemistry 2023; 29:e202301713. [PMID: 37452669 DOI: 10.1002/chem.202301713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/06/2023] [Accepted: 07/11/2023] [Indexed: 07/18/2023]
Abstract
Herein, we report the synthesis of a series of colibactin warhead model compounds using two newly developed metal-free photocatalytic cyclopropanation reactions. These mild cyclopropanations expand the known applications of eosin within synthesis. A halogen atom transfer reaction mode has been harnessed so that dihalides can be used as the cyclopropanating agents. The colibactin warhead models were then used to provide new insight into two key mechanisms in colibactin chemistry. An explanation is provided for why the colibactin warhead sometimes undergoes a ring expansion-addition reaction to give fused cyclobutyl products while at other times nucleophiles add directly to the cyclopropyl unit (as when DNA adds to colibactin). Finally, we provide some evidence that Cu(II) chelated to colibactin may catalyze an important oxidation of the colibactin-DNA adduct. The Cu(I) generated as a result could then also play a role in inducing double strand breaks in DNA.
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Affiliation(s)
- Artemis Bosveli
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
| | - Nefeli Griboura
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
| | | | - Dimitris Kalaitzakis
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
| | - Tamsyn Montagnon
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
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Lodochnikova OA, Kosolapova LS, Saifina AF, Gubaidullin AT, Fayzullin RR, Khamatgalimov AR, Litvinov IA, Kurbangalieva AR. Structural aspects of partial solid solution formation: two crystalline modifications of a chiral derivative of 1,5-dihydro-2H-pyrrol-2-one under consideration. CrystEngComm 2017. [DOI: 10.1039/c7ce01717k] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two opposite structural factors control the formation of a partial solid solution of the enantiomers of the titled compound.
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Affiliation(s)
- Olga A. Lodochnikova
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center, Russian Academy of Sciences
- Kazan 420088
- Russian Federation
- A.M. Butlerov Institute of Chemistry
| | - Liliya S. Kosolapova
- A.M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan 420008
- Russian Federation
| | - Alina F. Saifina
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center, Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Aidar T. Gubaidullin
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center, Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Robert R. Fayzullin
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center, Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Ayrat R. Khamatgalimov
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center, Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Igor A. Litvinov
- A.E. Arbuzov Institute of Organic and Physical Chemistry
- Kazan Scientific Center, Russian Academy of Sciences
- Kazan 420088
- Russian Federation
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Goh WK, Gardner CR, Chandra Sekhar KV, Biswas NN, Nizalapur S, Rice SA, Willcox M, Black DS, Kumar N. Synthesis, quorum sensing inhibition and docking studies of 1,5-dihydropyrrol-2-ones. Bioorg Med Chem 2015; 23:7366-77. [DOI: 10.1016/j.bmc.2015.10.025] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 10/16/2015] [Accepted: 10/16/2015] [Indexed: 12/20/2022]
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Pelkey ET, Pelkey SJ, Greger JG. De Novo Synthesis of 3-Pyrrolin-2-Ones. ADVANCES IN HETEROCYCLIC CHEMISTRY 2015. [DOI: 10.1016/bs.aihch.2015.04.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Rana S, Brown M, Dutta A, Bhaumik A, Mukhopadhyay C. Site-selective multicomponent synthesis of densely substituted 2-oxo dihydropyrroles catalyzed by clean, reusable, and heterogeneous TiO2 nanopowder. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2012.12.109] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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CuCl-catalyzed radical cyclisation of N-α-perchloroacyl-ketene-N,S-acetals: a new way to prepare disubstituted maleic anhydrides. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.04.117] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Li YP, Li ZJ, Meng XB. Highly diastereoselective conjugate addition of nitroalkanes to α,β-unsaturated sugar lactones for the efficient synthesis of chiral 2-pyrrolidones. Carbohydr Res 2011; 346:1801-8. [DOI: 10.1016/j.carres.2011.06.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2011] [Revised: 05/28/2011] [Accepted: 06/08/2011] [Indexed: 11/26/2022]
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9
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Pattarozzi M, Roncaglia F, Accorsi L, Parsons AF, Ghelfi F. Functional rearrangement of 3-Cl or 3,3-diCl-γ-lactams bearing a secondary 1-chloroalkyl substituent at C-4. Tetrahedron 2010. [DOI: 10.1016/j.tet.2009.11.111] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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11
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A new access to substituted tetraethyl N-Boc 2-aminoethylidene-1,1-bisphosphonates and phosphonyl-substituted aza-Morita–Baylis–Hillman-type adducts. Tetrahedron 2008. [DOI: 10.1016/j.tet.2007.11.072] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Ram RN, Tittal RK, Upreti S. An unusual decarboxylative benzannulation and biaryl formation during copper(I)-promoted halogen atom transfer radical cyclization of 2-allylaryl trichloroacetates. Tetrahedron Lett 2007. [DOI: 10.1016/j.tetlet.2007.09.058] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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14
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Stevens CV, Van Meenen E, Masschelein KG, Eeckhout Y, Hooghe W, D’hondt B, Nemykin VN, Zhdankin VV. A copper-catalyzed domino radical cyclization route to benzospiro-indolizidinepyrrolidinones. Tetrahedron Lett 2007. [DOI: 10.1016/j.tetlet.2007.07.211] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Goh WK, Iskander G, Black DS, Kumar N. An efficient lactamization of fimbrolides to novel 1,5-dihydropyrrol-2-ones. Tetrahedron Lett 2007. [DOI: 10.1016/j.tetlet.2007.01.165] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Shrestha-Dawadi PB, Lugtenburg J. Efficient Preparation of [2-13C]- and [3-13C]-3-Cyano-4-methyl-3-pyrrolin-2-one. European J Org Chem 2007. [DOI: 10.1002/ejoc.200600830] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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17
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A short approach to chaetomellic anhydride A from 2,2-dichloropalmitic acid: elucidation of the mechanism governing the functional rearrangement of the chlorinated pyrrolidin-2-one intermediate. Tetrahedron 2006. [DOI: 10.1016/j.tet.2005.09.140] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Moonen K, Van Meenen E, Verwée A, Stevens CV. One-Pot Tandem 1,4-1,2-Addition of Phosphites to α,β-Unsaturated Imines for the Synthesis of Glutamic Acid Analogues. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200501830] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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19
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Moonen K, Van Meenen E, Verwée A, Stevens CV. One-Pot Tandem 1,4-1,2-Addition of Phosphites to α,β-Unsaturated Imines for the Synthesis of Glutamic Acid Analogues. Angew Chem Int Ed Engl 2005; 44:7407-11. [PMID: 16240302 DOI: 10.1002/anie.200501830] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Kristof Moonen
- Research Group SynBioC, Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000 Ghent, Belgium
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Moonen K, Laureyn I, Stevens CV. Synthetic methods for azaheterocyclic phosphonates and their biological activity. Chem Rev 2005; 104:6177-215. [PMID: 15584699 DOI: 10.1021/cr030451c] [Citation(s) in RCA: 390] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kristof Moonen
- Department of Organic Chemistry, Faculty of Agricultural and Applied Biological Sciences, Ghent University, Coupure links 653, B-9000 Gent, Belgium
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De Buyck L, Danieli C, Ghelfi F, Pagnoni UM, Parsons AF, Pattarozzi M, Roncaglia F. A new route to (±)-erythro-roccellic acid and chaetomellic anhydride C through functional rearrangement, promoted by n-propylamine or CH3ONa/CH3OH, of N-propyl-3-chloro-4-dichloromethyl-3-dodecylpyrrolidin-2-one. Tetrahedron 2005. [DOI: 10.1016/j.tet.2005.01.086] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Stevens CV, Van Meenen E, Eeckhout Y, Vanderhoydonck B, Hooghe W. Synthesis of highly functionalised spiro-indoles by a halogen atom transfer radical cyclization. Chem Commun (Camb) 2005:4827-9. [PMID: 16193128 DOI: 10.1039/b508424e] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The halogen atom transfer radical cyclization (HATRC) has been evaluated on N-(indolylmethyl)trichloroacetamides under Cu(I)Cl catalysis using nitrogen containing ligands. The ring closure leads to the formation of 3,3-spiro-3H-indoles in moderate to good yields by a 5-exo-mechanism. Derivatives with an N-electron withdrawing substituent also lead to a 5-exo-trig and not to a 6-endo-trig cyclization.
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Affiliation(s)
- Christian V Stevens
- Research Group SynBioC, Department of Organic Chemistry, Faculty of Bioscience Engineering, Ghent University, Belgium.
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Danieli C, Ghelfi F, Mucci A, Pagnoni UM, Parsons AF, Pattarozzi M, Schenetti L. Functional rearrangement of polychlorinated pyrrolidin-2-ones to 5-imino-lactams promoted by n-propylamine. Tetrahedron 2004. [DOI: 10.1016/j.tet.2004.09.073] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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24
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Hydro-de-halogenation and consecutive deprotection of chlorinated N-amido-pyrrolidin-2-ones with Raney-Ni: an effective approach to gabapentin. Tetrahedron 2003. [DOI: 10.1016/j.tet.2003.10.046] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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25
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Bryans JS, Chessum NE, Huther N, Parsons AF, Ghelfi F. Metal-catalysed radical cyclisations leading to N-heterocycles: new approaches to gabapentin and pulchellalactam. Tetrahedron 2003. [DOI: 10.1016/s0040-4020(03)01030-5] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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