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El-Mahdi O, Melnyk O. α-Oxo aldehyde or glyoxylyl group chemistry in peptide bioconjugation. Bioconjug Chem 2013; 24:735-65. [PMID: 23578008 DOI: 10.1021/bc300516f] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Since the 1990s, α-oxo aldehyde or glyoxylic acid chemistry has inspired a vast array of synthetic tools for tailoring peptide or protein structures, for developing peptides endowed with novel physicochemical properties or biological functions, for assembling a large diversity of bioconjugates or hybrid materials, or for designing peptide-based micro or nanosystems. This past decade, important developments have enriched the α-oxo aldehyde synthetic tool box in peptide bioconjugation chemistry and explored novel applications. The aim of this review is to give a large overview of this creative field.
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Affiliation(s)
- Ouafâa El-Mahdi
- Université Sidi Mohamed Ben Abdellah, Faculté Polydisciplinaire de Taza, Morocco
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2
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Popov V, Panda SS, Katritzky AR. Ligations of N-acyl tryptophan units to give native peptides via 7-, 10-, 11- and 12-membered cyclic transition states. Org Biomol Chem 2013; 11:1594-7. [DOI: 10.1039/c3ob27421g] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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3
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Maurer A, Zeyher C, Amin B, Kalbacher H. A Periodate-Cleavable Linker for Functional Proteomics under Slightly Acidic Conditions: Application for the Analysis of Intracellular Aspartic Proteases. J Proteome Res 2012; 12:199-207. [DOI: 10.1021/pr300758c] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Andreas Maurer
- Interfaculty Institute of Biochemistry, University of Tuebingen, Ob dem Himmelreich 7, 72074
Tuebingen, Germany
| | - Claus Zeyher
- Interfaculty Institute of Biochemistry, University of Tuebingen, Ob dem Himmelreich 7, 72074
Tuebingen, Germany
| | - Bushra Amin
- Interfaculty Institute of Biochemistry, University of Tuebingen, Ob dem Himmelreich 7, 72074
Tuebingen, Germany
| | - Hubert Kalbacher
- Interfaculty Institute of Biochemistry, University of Tuebingen, Ob dem Himmelreich 7, 72074
Tuebingen, Germany
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4
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Deffieux D, Gaudrel-Grosay S, Grelard A, Chalumeau C, Quideau S. Stable solid-supported leucoanthocyanidin variants for flavanoid biosynthesis elucidation. Tetrahedron Lett 2009. [DOI: 10.1016/j.tetlet.2009.09.045] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Souplet V, Desmet R, Melnyk O. In Situ Ligation between Peptides and Silica Nanoparticles for Making Peptide Microarrays on Polycarbonate. Bioconjug Chem 2009; 20:550-7. [DOI: 10.1021/bc800474g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Vianney Souplet
- Institut de Biologie de Lille, UMR CNRS 8161, Universités de Lille 1 et 2, Institut Pasteur de Lille, IFR 142, 1 rue du Professeur Calmette, 59021 Lille Cedex, France
| | - Rémi Desmet
- Institut de Biologie de Lille, UMR CNRS 8161, Universités de Lille 1 et 2, Institut Pasteur de Lille, IFR 142, 1 rue du Professeur Calmette, 59021 Lille Cedex, France
| | - Oleg Melnyk
- Institut de Biologie de Lille, UMR CNRS 8161, Universités de Lille 1 et 2, Institut Pasteur de Lille, IFR 142, 1 rue du Professeur Calmette, 59021 Lille Cedex, France
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Dubs P, Bourel-Bonnet L, Subra G, Blanpain A, Melnyk O, Pinel AM, Gras-Masse H, Martinez J. Parallel Synthesis of a Lipopeptide Library by Hydrazone-Based Chemical Ligation. ACTA ACUST UNITED AC 2007; 9:973-81. [PMID: 17896820 DOI: 10.1021/cc070033b] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
alpha-Melanocyte-stimulating hormone (alpha-MSH) is an endogeneous linear tridecapeptide with potential application for the modulation of skin tanning. To evaluate the interest of introducing a lipid moiety onto this peptide, we developed an efficient chemoselective parallel method to prepare a large series of analogues of alpha-melanocortin with high purity, varying the nature or the relative position of the lipid moiety. Two sets of building blocks containing lipidic alpha-oxo-aldehydes or alpha-hydrazinoacetyl peptides were combined to obtain a 102-membered library of amphiphilic alpha-MSH analogues. This library was pharmacologically tested at 1 x 10(-7) M for the ability to induce AMPc production in M4Be melanoma cell line after stimulation of the human melanocortin MC1 receptor. Among theses lipopeptides, 84 compounds exhibited an AMPc induction higher than Melitane, a patented alpha-MSH agonist. These results provide strong evidence of the interest of introduction of a lipid tail for the pharmacomodulation of bioactive peptides.
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Affiliation(s)
- Pascaline Dubs
- Institut des Biomolécules Max Mousseron, Universités de Montpellier I et II, UMR-CNRS 5247, Faculté de Pharmacie, 34093 Montpellier, France
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Jolimaitre P, Poirier C, Richard A, Blanpain A, Delord B, Roux D, Bourel-Bonnet L. Synthesis of versatile chemical tools toward a structure/properties relationships study onto targeting colloids. Eur J Med Chem 2007; 42:114-24. [PMID: 17011671 DOI: 10.1016/j.ejmech.2006.08.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2006] [Revised: 07/25/2006] [Accepted: 08/11/2006] [Indexed: 11/28/2022]
Abstract
As part of a drug delivery project, four aldehydes of the type Pam-Lys(Pam)-spacer-CO-CHO were synthesized to be included in targeting colloids. Though amphiphilic, they were obtained within reasonable yields (18-55%) and with high RP-HPLC purity ( approximately 90%). Parallely, six complementary targeting peptides of the type H(2)N-NH-CH(2)-CO-spacer-YGRGDSP-NH(2) were prepared to be anchored onto colloids. Isolated yields are related to the spacer length and nature. To easily and rapidly modulate the distance between the peptide and the vesicle, every partners were elaborated on solid phase and the expected constructions were obtained by hydrazone ligation. One possible application is presented here with multilamellar vesicles targeting HUVEC cells. Preliminary results prove that the fine-tuning of the spacer length permits to optimize the recognition toward the target cells.
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Affiliation(s)
- Pascale Jolimaitre
- UMR 8525 CNRS/Université de Lille 2, Institut de Biologie de Lille, 1, rue Calmette, 59021 Lille Cedex, France
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Olivier C, Perzyna A, Coffinier Y, Grandidier B, Stiévenard D, Melnyk O, Durand JO. Detecting the chemoselective ligation of peptides to silicon with the use of cobalt-carbonyl labels. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2006; 22:7059-65. [PMID: 16863260 DOI: 10.1021/la060370m] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
While fluorescent-based methods are generally used to detect the immobilization and the interactions of biomolecules to solid supports, recent studies have shown their limitations in the case of silicon surfaces. As an alternative, we investigated the synthesis of peptides labeled with a metal transition complex and their subsequent immobilization to the silicon surfaces. The feasibility of using such probes has been explored by Fourier transform infrared spectroscopy (FTIR) and X-ray photoelectron spectroscopy (XPS). By starting with hydrogen-terminated or oxidized silicon surfaces, we functionalized those surfaces with semicarbazide groups and showed the site-specific linkage of glyoxylyl peptides labeled with a Co2(CO)6 moiety.
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Affiliation(s)
- Christophe Olivier
- UMR CNRS 8161, Biological Institute of Lille, 1 rue du Professeur Calmette, 59021 Lille, France
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Paulick MG, Hart KM, Brinner KM, Tjandra M, Charych DH, Zuckermann RN. Cleavable Hydrophilic Linker for One-Bead-One-Compound Sequencing of Oligomer Libraries by Tandem Mass Spectrometry. ACTA ACUST UNITED AC 2006; 8:417-26. [PMID: 16677012 DOI: 10.1021/cc0501460] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have developed a method for the rapid and unambiguous identification of sequences of hit compounds from one-bead-one-compound combinatorial libraries of peptide and peptoid ligands. The approach uses a cleavable linker that is hydrophilic to help reduce nonspecific binding to biological samples and allows for the attachment of a halogen tag, which greatly facilitates post-screening sequencing by tandem mass spectrometry (MS/MS). The linker is based on a tartaric acid unit, which, upon cleavage from resin, generates a C-terminal aldehyde. This aldehyde can then be derivatized with a bromine-containing amino-oxy compound that serves as an isotope tag for subsequent MS/MS analysis of y-ion fragments. We have applied this linker and method to the syntheses of a number of peptoids that vary in sequence and length and have also demonstrated single-bead sequencing of a peptoid pentamer. The linker is also shown to have very low levels of nonspecific binding to proteins.
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Garcia JM, Far S, Diesis E, Melnyk O. Determination of glyoxylyl-peptide concentration using oxime chemistry and RP-HPLC analysis. J Pept Sci 2006; 12:734-8. [PMID: 16981231 DOI: 10.1002/psc.791] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Glyoxylyl-peptides are useful peptide derivatives in the context of hydrazone, oxime or thiazolidine ligations. We describe a method for the determination of glyoxylyl-peptide concentration based on the reaction of the alpha-oxo aldehyde group with an excess of O-benzylhydroxylamine. The amount of O-benzylhydroxylamine necessary to convert the alpha-oxo aldehyde group into the corresponding O-benzyloxime was determined by RP-HPLC analysis and corresponded to the quantity of glyoxylyl-peptide used in the experiment. The method is rapid, sensitive, accurate and allows the automated analysis of several samples.
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Affiliation(s)
- Jean-Michel Garcia
- UMR CNRS 8161, Biological Institute of Lille, 1 rue du Pr Calmette, 59021 Lille, France
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Joly P, Ardès-Guisot N, Kar S, Granier M, Durand JO, Melnyk O. Hybrid Bioorganic-Inorganic Materials Prepared by Site-Specific Ligation of Peptides to Functionalized Polydisperse Silica Particles. European J Org Chem 2005. [DOI: 10.1002/ejoc.200400839] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Far S, Gouyette C, Melnyk O. A novel phosphoramidite for the synthesis of α-oxo aldehyde-modified oligodeoxynucleotides. Tetrahedron 2005. [DOI: 10.1016/j.tet.2005.03.144] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Coffinier Y, Olivier C, Perzyna A, Grandidier B, Wallart X, Durand JO, Melnyk O, Stiévenard D. Semicarbazide-functionalized Si(111) surfaces for the site-specific immobilization of peptides. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2005; 21:1489-1496. [PMID: 15697299 DOI: 10.1021/la047781s] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The covalent attachment of semicarbazide-functionalized layers to hydrogen-terminated Si(111) surfaces is reported. The surface modification, based on the photoinduced hydrosilylation of a Si(111) surface with protected semicarbazide-functionalized alkenes, was investigated by means of X-ray photoelectron spectroscopy (XPS), contact angle measurements, and atomic force microscopy (AFM). The removal of the protecting group yielded a semicarbazide-terminated monolayer which was reacted with peptides bearing a glyoxylyl group for site-specific alpha-oxo semicarbazone ligation.
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Affiliation(s)
- Y Coffinier
- Institut d'Electronique et de Microélectronique et de Nanotechnologie, IEMN, (CNRS, UMR 8520) Département ISEN, 41 bd Vauban, 59046 Lille Cedex, France
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Abstract
Solid-phase synthesis of biomolecules, of which peptides are the principal example, is well established. However, synthetic peptides containing modifications at the carboxy termini are often desired because of their potential therapeutic properties. As a result, there is a necessity for effective solid-phase strategies for the preparation of peptides with C-terminal end groups other than the usual carboxylic acid and carboxamide functionalities. The present article primarily reviews literature reports on methods for solid-phase synthesis of C-terminal modified peptides. In addition, general information about biological activities and/or synthetic applications of each individual class of peptide is also provided.
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Affiliation(s)
- Jordi Alsina
- Department of Chemistry, Indiana University-Purdue University Indianapolis, 402 North Blackford Street, Indianapolis, IN 46202, USA.
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Olivier C, Hot D, Huot L, Ollivier N, El-Mahdi O, Gouyette C, Huynh-Dinh T, Gras-Masse H, Lemoine Y, Melnyk O. Alpha-oxo semicarbazone peptide or oligodeoxynucleotide microarrays. Bioconjug Chem 2003; 14:430-9. [PMID: 12643754 DOI: 10.1021/bc025571q] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We describe in this paper the preparation and characterization of semicarbazide glass slides and their use for the fabrication of microarrays using site-specific alpha-oxo semicarbazone ligation. The functional density and homogeneity of the semicarbazide glass slides were optimized by analyzing the reactivity of the layer toward a synthetic glyoxylyl fluorescent probe. Oligonucleotide microarrays were prepared by site-specific immobilization of glyoxylyl oligodeoxynucleotides. The slides were directly used in the hybridization assays using fluorescence detection and displayed a significant gain in sensibility as compared to the aldehyde glass slide/amino oligodeoxynucleotide chemistry. Semicarbazide slides were also used for the immobilization of a biotinylated peptide alpha-oxo aldehyde. The peptide microarrays allowed model interaction studies with streptavidin or an anti-biotin antibody.
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Affiliation(s)
- Christophe Olivier
- UMR CNRS 8525, Biological Institute of Lille, 1 rue du Pr Calmette 59021 Lille France
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16
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Ollivier N, Olivier C, Gouyette C, Huynh-Dinh T, Gras-Masse H, Melnyk O. Synthesis of oligonucleotide–peptide conjugates using hydrazone chemical ligation. Tetrahedron Lett 2002. [DOI: 10.1016/s0040-4039(01)02315-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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17
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A novel family of amphilic α-oxo aldehydes for the site-specific modification of peptides by two palmitoyl groups in solution or in liposome suspensions. Tetrahedron Lett 2001. [DOI: 10.1016/s0040-4039(01)01441-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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18
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C-terminal glyoxylyl peptides for sensitive enzyme-linked immunosorbent assays. Int J Pept Res Ther 2001. [DOI: 10.1007/bf02446525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Abstract
Nowadays it is rare to find an issue of a major chemistry journal without at least one article on solid-phase synthesis. This is hardly surprising: the technique promises an end to arduous work-up procedures and the ability to facilitate the creation of vast libraries of compounds using combinatorial techniques. No longer is the technique only of interest to those involved in peptide synthesis: an enormous variety of product classes have now been prepared on and isolated from the solid phase. It is the "linker" which is the focus of this article. The linker's ultimate function is to release a product from the support into solution: it does this, without exception, with a chemical change to the product at the former linkage site. Some linkers, apparently, are "traceless". But what, in fact, is "tracelessness"? Twenty years ago, in a climate where cleavage of a linker resulted in formation of a polar carboxylic acid as the vestige of the support, the concept was attractive. Today the chemist is faced with a myriad of novel linkers which have the ability to release products bearing most major functionalities at the former linkage site and we will argue here that the term "traceless", although currently in widespread use, is meaningless. Instead, we propose a new categorization of linkers based on the functionality they release upon cleavage, and suggest a nomenclature to underpin this categorization. We anticipate that the article will also serve to highlight areas of linker technology in need of further research.
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Affiliation(s)
- Alex C. Comely
- Department of Chemistry King's College, London, Strand London, WC2R 2LS (UK)
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Melnyk O, Fehrentz JA, Martinez J, Gras-Masse H. Functionalization of peptides and proteins by aldehyde or keto groups. Biopolymers 2001; 55:165-86. [PMID: 11074412 DOI: 10.1002/1097-0282(2000)55:2<165::aid-bip50>3.0.co;2-#] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The functionalization of peptides and proteins by aldehyde or keto groups has become the subject of intensive research since the discovery of the inhibition properties of peptide aldehydes and the advent of protein engineering. The first part of this review focuses upon the tremendous efforts devoted to the solid-phase synthesis of peptide aldehydes as protease inhibitors. The second part describes the utility of the aldehyde or keto functionalities for the site-specific modification of peptides or proteins.
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Affiliation(s)
- O Melnyk
- UMR 8525 Institut de Biologie et Institut Pasteur de Lille, Université de Lille 2, 1 rue du Pr Calmette, 59021 Lille, France.
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Grandjean C, Gras-Masse H, Melnyk O. Synthesis of clustered glycoside-antigen conjugates by two one-pot, orthogonal, chemoselective ligation reactions: scope and limitations. Chemistry 2001; 7:230-9. [PMID: 11205015 DOI: 10.1002/1521-3765(20010105)7:1<230::aid-chem230>3.0.co;2-l] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Major histocompatibility class II antigens have been bound to clustered glycosides for selective targeting of the dendritic cell mannose receptor. Di-, tetra-, and octavalent glycoside-antigen conjugates have been obtained after two, orthogonal, hydrazone/thioether ligations, performed by using thio derivatives of D-mannose, D-galactose, or D(-)-quinic acid, glyoxylyl (or hydrazino)-N-chloroacetylated lysinyl trees, and N-terminal hydrazino (or glyoxylyl) peptide antigens. Successful one-pot condensations have been developed to account for the nature of the antigens and the valency of the trees.
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Affiliation(s)
- C Grandjean
- Laboratoire de Synthèse, Structure et Fonction des Biomolécules, UMR 8525 du CNRS, Université de Lille II, Institut de Biologie et Institut Pasteur de Lille 1, France.
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Lelièvre D, Buré C, Laot F, Delmas A. Synthesis of peptide di-aldehyde precursor for stepwise chemoselective ligations via oxime bonds. Tetrahedron Lett 2001. [DOI: 10.1016/s0040-4039(00)01907-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Bonnet D, Bourel L, Gras-Masse H, Melnyk O. A novel lipophilic glyoxylic acid derivative for the lipidation of peptides using salt-free hydrazone ligation. Tetrahedron Lett 2000. [DOI: 10.1016/s0040-4039(00)01784-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Guillier F, Orain D, Bradley M. Linkers and cleavage strategies in solid-phase organic synthesis and combinatorial chemistry. Chem Rev 2000; 100:2091-158. [PMID: 11749285 DOI: 10.1021/cr980040+] [Citation(s) in RCA: 389] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- F Guillier
- Department of Chemistry, Southampton University, Highfield, Southampton SO17 1BJ, U.K., and Alanex Division of Agouron Pharmaceuticals, A Werner Lambert Company, 3550 General Atomic Courts, San Diego, California 92121
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Grandjean C, Rommens C, Gras-Masse H, Melnyk O. One-Pot Synthesis of Antigen-Bearing, Lysine-Based Cluster Mannosides Using Two Orthogonal Chemoselective Ligation Reactions. Angew Chem Int Ed Engl 2000. [DOI: 10.1002/(sici)1521-3757(20000317)112:6<1110::aid-ange1110>3.0.co;2-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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