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Yang J, Zhang F, Ge Y, Yu W, Xue Q, Wang M, Wang H, Xue Q, Liu W, Niu Z, Ding X. Effects of geographic isolation on the Bulbophyllum chloroplast genomes. BMC PLANT BIOLOGY 2022; 22:201. [PMID: 35439926 PMCID: PMC9016995 DOI: 10.1186/s12870-022-03592-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Accepted: 04/11/2022] [Indexed: 06/02/2023]
Abstract
BACKGROUND Because chloroplast (cp) genome has more conserved structures than nuclear genome and mitochondrial genome, it is a useful tool in estimating the phylogenetic relationships of plants. With a series of researches for cp genomes, there have been comprehensive understandings about the cp genome features. The genus Bulbophyllum widely distributed in Asia, South America, Australia and other places. Therefore, it is an excellent type genus for studying the effects of geographic isolation. RESULTS In this study, the cp genomes of nine Bulbophyllum orchids were newly sequenced and assembled using the next-generation sequencing technology. Based on 19 Asian (AN) and eight South American (SA) Bulbophyllum orchids, the cp genome features of AN clade and SA clade were compared. Comparative analysis showed that there were considerable differences in overall cp genome features between two clades in three aspects, including basic cp genome features, SSC/IRB junctions (JSBs) and mutational hotspots. The phylogenetic analysis and divergence time estimation results showed that the AN clade has diverged from the SA clade in the late Oligocene (21.50-30.12 mya). After estimating the occurrence rates of the insertions and deletions (InDels), we found that the change trends of cp genome structures between two clades were different under geographic isolation. Finally, we compared selective pressures on cp genes and found that long-term geographic isolation made AN and SA Bulbophyllum cp genes evolved variably. CONCLUSION The results revealed that the overall structural characteristics of Bulbophyllum cp genomes diverged during the long-term geographic isolation, and the crassulacean acid metabolism (CAM) pathway may play an important role in the Bulbophyllum species evolution.
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Affiliation(s)
- Jiapeng Yang
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Fuwei Zhang
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Yajie Ge
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Wenhui Yu
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Qiqian Xue
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Mengting Wang
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Hongman Wang
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Qingyun Xue
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Wei Liu
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China
| | - Zhitao Niu
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China.
| | - Xiaoyu Ding
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.
- Jiangsu Provincial Engineering Research Center for Technical Industrialization for Dendrobiums, Nanjing, 210023, China.
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Johnson JE, Field CB, Berry JA. The limiting factors and regulatory processes that control the environmental responses of C 3, C 3-C 4 intermediate, and C 4 photosynthesis. Oecologia 2021; 197:841-866. [PMID: 34714387 PMCID: PMC8591018 DOI: 10.1007/s00442-021-05062-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 10/07/2021] [Indexed: 11/28/2022]
Abstract
Here, we describe a model of C3, C3-C4 intermediate, and C4 photosynthesis that is designed to facilitate quantitative analysis of physiological measurements. The model relates the factors limiting electron transport and carbon metabolism, the regulatory processes that coordinate these metabolic domains, and the responses to light, carbon dioxide, and temperature. It has three unique features. First, mechanistic expressions describe how the cytochrome b6f complex controls electron transport in mesophyll and bundle sheath chloroplasts. Second, the coupling between the mesophyll and bundle sheath expressions represents how feedback regulation of Cyt b6f coordinates electron transport and carbon metabolism. Third, the temperature sensitivity of Cyt b6f is differentiated from that of the coupling between NADPH, Fd, and ATP production. Using this model, we present simulations demonstrating that the light dependence of the carbon dioxide compensation point in C3-C4 leaves can be explained by co-occurrence of light saturation in the mesophyll and light limitation in the bundle sheath. We also present inversions demonstrating that population-level variation in the carbon dioxide compensation point in a Type I C3-C4 plant, Flaveria chloraefolia, can be explained by variable allocation of photosynthetic capacity to the bundle sheath. These results suggest that Type I C3-C4 intermediate plants adjust pigment and protein distributions to optimize the glycine shuttle under different light and temperature regimes, and that the malate and aspartate shuttles may have originally functioned to smooth out the energy supply and demand associated with the glycine shuttle. This model has a wide range of potential applications to physiological, ecological, and evolutionary questions.
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Affiliation(s)
- Jennifer E Johnson
- Department of Global Ecology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA.
| | - Christopher B Field
- Department of Global Ecology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA.,Stanford Woods Institute for the Environment, Stanford University, 473 Via Ortega, Stanford, CA, 94305, USA
| | - Joseph A Berry
- Department of Global Ecology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA
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Trowbridge AM, Moore DJP, Stoy PC. Preface: honoring the career of Russell K. Monson. Oecologia 2021; 197:817-822. [PMID: 34708288 DOI: 10.1007/s00442-021-05060-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 10/04/2021] [Indexed: 11/26/2022]
Affiliation(s)
- Amy M Trowbridge
- Department of Entomology, University of Wisconsin, Madison, USA.
| | - David J P Moore
- School of Natural Resources and the Environment, University of Arizona, Tucson, USA
| | - Paul C Stoy
- Department of Biological Systems Engineering, University of Wisconsin, Madison, USA
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4
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Russ Monson and the evolution of C 4 photosynthesis. Oecologia 2021; 197:823-840. [PMID: 33661402 DOI: 10.1007/s00442-021-04883-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 02/12/2021] [Indexed: 10/22/2022]
Abstract
Early in his career, Russ Monson produced a series of influential eco-physiological papers that helped lay the foundation for the study of C4 plant evolution. Among the most important was a 1984 paper with Maurice Ku and Gerry Edwards that outlined the pathway for the evolutionary bridge from C3 to C4 photosynthesis. This model proposed C4 photosynthesis arose out of a shuttle that imported photorespiratory metabolites into bundle sheath (BS) cells, where glycine decarboxylase cleaved off CO2, allowing it to accumulate and be efficiently refixed by BS Rubisco. By the mid-1990's, Monson's research focus had shifted away from C4 plants, save for one 2003 paper on C3 versus C4 stomatal control with Travis Huxman, and a series of critical reviews on C4 evolution. These reviews heavily influenced the modern synthesis of C4 evolutionary studies, which incorporates phylogenomic understanding with physiological, molecular, and structural characterizations of trait shifts in multiple evolutionary lineages. Subsequent research supported the Monson et al. model from 1984, by showing a glycine shuttle occurs in nearly all C3-C4 intermediate species identified. Monson also examined the physiological controls over the ecological distribution of C3, C3-C4 intermediate, and C4 photosynthesis, building our understanding of the fitness value of the intermediate and C4 pathway in relevant microenvironments. By establishing the foundation for discoveries that followed, Russ Monson can rightly be considered a leading pioneer contributing to the evolutionary biology of C4 photosynthesis.
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5
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Tay IYY, Odang KB, Cheung CYM. Metabolic Modeling of the C 3-CAM Continuum Revealed the Establishment of a Starch/Sugar-Malate Cycle in CAM Evolution. FRONTIERS IN PLANT SCIENCE 2021; 11:573197. [PMID: 33584741 PMCID: PMC7874232 DOI: 10.3389/fpls.2020.573197] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 12/17/2020] [Indexed: 05/11/2023]
Abstract
The evolution of Crassulacean acid metabolism (CAM) is thought to be along a C3-CAM continuum including multiple variations of CAM such as CAM cycling and CAM idling. Here, we applied large-scale constraint-based modeling to investigate the metabolism and energetics of plants operating in C3, CAM, CAM cycling, and CAM idling. Our modeling results suggested that CAM cycling and CAM idling could be potential evolutionary intermediates in CAM evolution by establishing a starch/sugar-malate cycle. Our model analysis showed that by varying CO2 exchange during the light period, as a proxy of stomatal conductance, there exists a C3-CAM continuum with gradual metabolic changes, supporting the notion that evolution of CAM from C3 could occur solely through incremental changes in metabolic fluxes. Along the C3-CAM continuum, our model predicted changes in metabolic fluxes not only through the starch/sugar-malate cycle that is involved in CAM photosynthetic CO2 fixation but also other metabolic processes including the mitochondrial electron transport chain and the tricarboxylate acid cycle at night. These predictions could guide engineering efforts in introducing CAM into C3 crops for improved water use efficiency.
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6
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Young SNR, Sack L, Sporck-Koehler MJ, Lundgren MR. Why is C4 photosynthesis so rare in trees? JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:4629-4638. [PMID: 32409834 PMCID: PMC7410182 DOI: 10.1093/jxb/eraa234] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 05/12/2020] [Indexed: 05/08/2023]
Abstract
Since C4 photosynthesis was first discovered >50 years ago, researchers have sought to understand how this complex trait evolved from the ancestral C3 photosynthetic machinery on >60 occasions. Despite its repeated emergence across the plant kingdom, C4 photosynthesis is notably rare in trees, with true C4 trees only existing in Euphorbia. Here we consider aspects of the C4 trait that could limit but not preclude the evolution of a C4 tree, including reduced quantum yield, increased energetic demand, reduced adaptive plasticity, evolutionary constraints, and a new theory that the passive symplastic phloem loading mechanism observed in trees, combined with difficulties in maintaining sugar and water transport over a long pathlength, could make C4 photosynthesis largely incompatible with the tree lifeform. We conclude that the transition to a tree habit within C4 lineages as well as the emergence of C4 photosynthesis within pre-existing trees would both face a series of challenges that together explain the global rarity of C4 photosynthesis in trees. The C4 trees in Euphorbia are therefore exceptional in how they have circumvented every potential barrier to the rare C4 tree lifeform.
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Affiliation(s)
- Sophie N R Young
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Lawren Sack
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA
| | | | - Marjorie R Lundgren
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- Correspondence:
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7
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Cousins AB, Mullendore DL, Sonawane BV. Recent developments in mesophyll conductance in C3, C4, and crassulacean acid metabolism plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 101:816-830. [PMID: 31960507 DOI: 10.1111/tpj.14664] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2019] [Accepted: 12/19/2019] [Indexed: 05/24/2023]
Abstract
The conductance of carbon dioxide (CO2 ) from the substomatal cavities to the initial sites of CO2 fixation (gm ) can significantly reduce the availability of CO2 for photosynthesis. There have been many recent reviews on: (i) the importance of gm for accurately modelling net rates of CO2 assimilation, (ii) on how leaf biochemical and anatomical factors influence gm , (iii) the technical limitation of estimating gm , which cannot be directly measured, and (iv) how gm responds to long- and short-term changes in growth and measurement environmental conditions. Therefore, this review will highlight these previous publications but will attempt not to repeat what has already been published. We will instead initially focus on the recent developments on the two-resistance model of gm that describe the potential of photorespiratory and respiratory CO2 released within the mitochondria to diffuse directly into both the chloroplast and the cytosol. Subsequently, we summarize recent developments in the three-dimensional (3-D) reaction-diffusion models and 3-D image analysis that are providing new insights into how the complex structure and organization of the leaf influences gm . Finally, because most of the reviews and literature on gm have traditionally focused on C3 plants we review in the final sections some of the recent developments, current understanding and measurement techniques of gm in C4 and crassulacean acid metabolism (CAM) plants. These plants have both specialized leaf anatomy and either a spatially or temporally separated CO2 concentrating mechanisms (C4 and CAM, respectively) that influence how we interpret and estimate gm compared with a C3 plants.
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Affiliation(s)
- Asaph B Cousins
- School of Biological Sciences, Washington State University, Pullman, WA, 99164, USA
| | - Daniel L Mullendore
- School of Biological Sciences, Washington State University, Pullman, WA, 99164, USA
| | - Balasaheb V Sonawane
- School of Biological Sciences, Washington State University, Pullman, WA, 99164, USA
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8
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Hultine KR, Cushman JC, Williams DG. New perspectives on crassulacean acid metabolism biology. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:6489-6493. [PMID: 31782509 PMCID: PMC6883260 DOI: 10.1093/jxb/erz465] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Affiliation(s)
- Kevin R Hultine
- Department of Research, Conservation and Collections, Desert Botanical Garden, Phoenix, AZ, USA
| | - John C Cushman
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, NV, USA
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9
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Niechayev NA, Jones AM, Rosenthal DM, Davis SC. A model of environmental limitations on production of Agave americana L. grown as a biofuel crop in semi-arid regions. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:6549-6559. [PMID: 30597061 PMCID: PMC6883261 DOI: 10.1093/jxb/ery383] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Accepted: 11/02/2018] [Indexed: 05/10/2023]
Abstract
Plants that use crassulacean acid metabolism (CAM) have the potential to meet growing agricultural resource demands using land that is considered unsuitable for many common crop species. Agave americana L., an obligate CAM plant, has potential as an advanced biofuel crop in water-limited regions, and has greater cold tolerance than other high-yielding CAM species, but physiological tolerances have not been completely resolved. We developed a model to estimate the growth responses of A. americana to water input, temperature, and photosynthetically active radiation (PAR). The photosynthetic response to PAR was determined experimentally by measuring the integrated leaf gas exchange over 24 h after acclimation to six light levels. Maximum CO2 fixation rates were observed at a PAR intensity of 1250 µmol photons m-2 s-1. Growth responses of A. americana to water and temperature were also determined, and a monthly environmental productivity index (EPI) was derived that can be used to predict biomass growth. The EPI was calculated as the product of water, temperature, and light indices estimated for conditions at a site in Maricopa (Arizona), and compared with measured biomass at the same site (where the first field trial of A. americana as a crop was completed). The monthly EPI summed over the lifetime of multi-year crops was highly correlated with the average measured biomass of healthy 2- and 3-year-old plants grown in the field. The resulting relationship between EPI and biomass provides a simple model for estimating the production of A. americana at a monthly time step according to light, temperature, and precipitation inputs, and is a useful tool for projecting the potential geographic range of this obligate CAM species in future climatic conditions.
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Affiliation(s)
- Nicholas A Niechayev
- Voinovich School of Leadership and Public Affairs, Ohio University, Athens, OH, USA
| | - Alexander M Jones
- Voinovich School of Leadership and Public Affairs, Ohio University, Athens, OH, USA
| | - David M Rosenthal
- Department of Environmental and Plant Biology, Ohio University, Athens, OH, USA
| | - Sarah C Davis
- Voinovich School of Leadership and Public Affairs, Ohio University, Athens, OH, USA
- Department of Environmental and Plant Biology, Ohio University, Athens, OH, USA
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10
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Xu M, Wang Y, Yang H, Xie B, Niu X. Modern climate and vegetation variability recorded in organic compounds and carbon isotopic compositions in the Dianchi watershed. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2015; 22:14314-14324. [PMID: 25976326 DOI: 10.1007/s11356-015-4651-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2014] [Accepted: 05/04/2015] [Indexed: 06/04/2023]
Abstract
The aliphatic hydrocarbons distribution and compound-specific characteristics of carbon isotopic compositions in the sediments from the small catchment (197 km(2)) of the Dianchi watershed were investigated for identification of modern climate and vegetation variations in the study area. Results show that a regular bimodal n-alkanes distribution ranged from nC16 to nC33, with strong dominance at nC17 for short-chain n-alkanes and nC31 for long-chain n-alkanes. Mass chromatogram of total fatty acids also indicates corresponding mixed contribution of algae, hydrophilous non-emergent (C4 plants) and terrestrial plants (C3 plants) to sedimentary organic matter (OM). At the depth of -24 to -25 cm (early 1970s), nC31/nC17 and terrestrial to aquatic ratio of hydrocarbons (TAR) values decrease, suggesting a shift of OM origins from C3 terrestrial plants to algae-derived C4 plants. The highest water stage in 1971 was found to be recorded in the particle size (<4 μm). For long-chain alkanes, the values of δ (13)Corg and δ (13)Cn-alkanes varied from -26.9 to -22.4 and -33.4 to -27.9 ‰, respectively. Population growth and economic development led to a demand for abundant habitable and cultivable land. Due to unreasonable land expansion, the primordial forest sporadically distributed. A mixture of C3 and C4 plants probably replaced C3 plants as the sources of OM in the past 10 years. The changes of land-use types and severe drought resulted in the excessive OM inputs to the watershed.
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Affiliation(s)
- Meina Xu
- School of Geography Science, Nanjing Normal University, 1 Wenyuan Road, Qixia, Nanjing, 210023, China
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11
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Wang Y, Yang H, Zhang J, Xu M, Wu C. Biomarker and stable carbon isotopic signatures for 100-200 year sediment record in the Chaihe catchment in southwest China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 502:266-275. [PMID: 25261816 DOI: 10.1016/j.scitotenv.2014.09.017] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2014] [Revised: 09/05/2014] [Accepted: 09/07/2014] [Indexed: 06/03/2023]
Abstract
Natural inputs and anthropogenic influences on lakes and their catchments are reflected in the sediment record. In the present study, the extractable organic compounds from sediments in the Chaihe catchment of the Dianchi watershed were analyzed to characterize source inputs. Results show that the sediments are dominated by odd numbered n-alkanes (n-C16-n-C33), maximizing at n-C17, n-C29 and n-C31. Aliphatic hydrocarbon may be composed of terrestrial plants and bacteria. The values of δ(13)C27, δ(13)C29 and δ(13)C31 of n-alkanes exhibit a range from -33.27‰ to -25.46‰, from -35.76‰ to -28.47‰ and from -33.67‰ to -27.42‰, respectively and three records strongly covary with depth, falling within the range of C3 plants in the study area. An isotopic model revealed C3 plant contribution to sedimentary organic matter (OM) ranging from 40.75% to 97.22%. The values of ACL27-33, CPI27-33, OEP, Paq, Pr/Ph, (C27+C29)/2C31, (C21+C23+C25)/3C17 and nC26(-)/nC27(+) are consistent with the C3 plant predominance. A constant CRS model gave the accumulation rates ranging from 2.69 to 8.46mma(-1) spanning 1885-2010. It was concluded that OM transport in the Chaihe catchment was influenced strongly by human activities resulting in enhanced eutrophication.
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Affiliation(s)
- Yanhua Wang
- School of Geography Science, Nanjing Normal University, 1 Wenyuan Road, Qixia, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, China.
| | - Hao Yang
- School of Geography Science, Nanjing Normal University, 1 Wenyuan Road, Qixia, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, China; Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, China
| | - Jixiang Zhang
- College of Economics and Management, Nanjing University of Aeronautics & Astronautics, 29 Yudao Street, Baixia, Nanjing 210016, China
| | - Meina Xu
- School of Geography Science, Nanjing Normal University, 1 Wenyuan Road, Qixia, Nanjing 210023, China
| | - Changbin Wu
- School of Geography Science, Nanjing Normal University, 1 Wenyuan Road, Qixia, Nanjing 210023, China
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Sage RF, Khoshravesh R, Sage TL. From proto-Kranz to C4 Kranz: building the bridge to C4 photosynthesis. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:3341-56. [PMID: 24803502 DOI: 10.1093/jxb/eru180] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
In this review, we examine how the specialized "Kranz" anatomy of C4 photosynthesis evolved from C3 ancestors. Kranz anatomy refers to the wreath-like structural traits that compartmentalize the biochemistry of C4 photosynthesis and enables the concentration of CO2 around Rubisco. A simplified version of Kranz anatomy is also present in the species that utilize C2 photosynthesis, where a photorespiratory glycine shuttle concentrates CO2 into an inner bundle-sheath-like compartment surrounding the vascular tissue. C2 Kranz is considered to be an intermediate stage in the evolutionary development of C4 Kranz, based on the intermediate branching position of C2 species in 14 evolutionary lineages of C4 photosynthesis. In the best-supported model of C4 evolution, Kranz anatomy in C2 species evolved from C3 ancestors with enlarged bundle sheath cells and high vein density. Four independent lineages have been identified where C3 sister species of C2 plants exhibit an increase in organelle numbers in the bundle sheath and enlarged bundle sheath cells. Notably, in all of these species, there is a pronounced shift of mitochondria to the inner bundle sheath wall, forming an incipient version of the C2 type of Kranz anatomy. This incipient version of C2 Kranz anatomy is termed proto-Kranz, and is proposed to scavenge photorespiratory CO2. By doing so, it may provide fitness benefits in hot environments, and thus represent a critical first stage of the evolution of both the C2 and C4 forms of Kranz anatomy.
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Affiliation(s)
- Rowan F Sage
- Department of Ecology and Evolutionary Biology, The University of Toronto, 25 Willcocks Street, Toronto, On M5S3B2 Canada
| | - Roxana Khoshravesh
- Department of Ecology and Evolutionary Biology, The University of Toronto, 25 Willcocks Street, Toronto, On M5S3B2 Canada
| | - Tammy L Sage
- Department of Ecology and Evolutionary Biology, The University of Toronto, 25 Willcocks Street, Toronto, On M5S3B2 Canada
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13
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Hancock L, Edwards EJ. Phylogeny and the inference of evolutionary trajectories. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:3491-8. [PMID: 24755279 PMCID: PMC4085962 DOI: 10.1093/jxb/eru118] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Most important organismal adaptations are not actually single traits, but complex trait syndromes that are evolutionarily integrated into a single emergent phenotype. Two alternative photosynthetic pathways, C4 photosynthesis and crassulacean acid metabolism (CAM), are primary plant adaptations of this sort, each requiring multiple biochemical and anatomical modifications. Phylogenetic methods are a promising approach for teasing apart the order of character acquisition during the evolution of complex traits, and the phylogenetic placement of intermediate phenotypes as sister taxa to fully optimized syndromes has been taken as good evidence of an 'ordered' evolutionary trajectory. But how much power does the phylogenetic approach have to detect ordered evolution? This study simulated ordered and unordered character evolution across a diverse set of phylogenetic trees to understand how tree size, models of evolution, and sampling efforts influence the ability to detect an evolutionary trajectory. The simulations show that small trees (15 taxa) do not contain enough information to correctly infer either an ordered or unordered trajectory, although inference improves as tree size and sampling increases. However, even when working with a 1000-taxon tree, the possibility of inferring the incorrect evolutionary model (type I/type II error) remains. Caution is needed when interpreting the phylogenetic placement of intermediate phenotypes, especially in small lineages. Such phylogenetic patterns can provide a line of evidence for the existence of a particular evolutionary trajectory, but they should be coupled with other types of data to infer the stepwise evolution of a complex character trait.
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Affiliation(s)
- Lillian Hancock
- Department of Ecology and Evolutionary Biology, Brown University, Box G-W, 80 Waterman St, Providence, RI 02912, USA
| | - Erika J Edwards
- Department of Ecology and Evolutionary Biology, Brown University, Box G-W, 80 Waterman St, Providence, RI 02912, USA
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Ehleringer JR, Sage RF, Flanagan LB, Pearcy RW. Climate change and the evolution of C(4) photosynthesis. Trends Ecol Evol 2012; 6:95-9. [PMID: 21232434 DOI: 10.1016/0169-5347(91)90183-x] [Citation(s) in RCA: 155] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Plants assimilate carbon by one of three photosynthetic pathways, commonly called the C(3), C(4), and CAM pathways. The C(4) photosynthetic pathway, found only among the angiosperms, represents a modification of C(3) metabolism that is most effective at low concentrations of CO(2). Today, C(4) plants are most common in hot, open ecosystems, and it is commonly felt that they evolved under these conditions. However, high light and high temperature, by themselves, are not sufficient to favor the evolution of C(4) photosynthesis at atmospheric CO(2) levels significantly above the current ambient values. A review of evidence suggests that C(4) plants evolved in response to a reduction in atmospheric CO(2) levels that began during the Cretaceous and continued until the Miocene.
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Affiliation(s)
- J R Ehleringer
- James Ehleringer and Lawrence Flanagan are at the Dept of Biology, University of Utah, Salt Lake City, UT 841 12, USA
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Ludwig M. Carbonic anhydrase and the molecular evolution of C4 photosynthesis. PLANT, CELL & ENVIRONMENT 2012; 35:22-37. [PMID: 21631531 DOI: 10.1111/j.1365-3040.2011.02364.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
C(4) photosynthesis, a biochemical CO(2)-concentrating mechanism (CCM), evolved more than 60 times within the angiosperms from C(3) ancestors. The genus Flaveria, which contains species demonstrating C(3), C(3)-C(4), C(4)-like or C(4) photosynthesis, is a model for examining the molecular evolution of the C(4) pathway. Work with carbonic anhydrase (CA), and C(3) and C(4) Flaveria congeners has added significantly to the understanding of this process. The C(4) form of CA3, a β-CA, which catalyses the first reaction in the C(4) pathway by hydrating atmospheric CO(2) to bicarbonate in the cytosol of mesophyll cells (mcs), evolved from a chloroplastic C(3) ancestor. The molecular modifications to the ancestral CA3 gene included the loss of the sequence encoding the chloroplast transit peptide, and mutations in regulatory regions that resulted in high levels of expression in the C(4) mesophyll. Analyses of the CA3 proteins and regulatory elements from Flaveria photosynthetic intermediates indicated C(4) biochemistry very likely evolved in a specific, stepwise manner in this genus. The details of the mechanisms involved in the molecular evolution of other C(4) plant β-CAs are unknown; however, comparative genetics indicate gene duplication and neofunctionalization played significant roles as they did in Flaveria.
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Affiliation(s)
- Martha Ludwig
- School of Biomedical, Biomolecular and Chemical Sciences [M310], The University of Western Australia, Crawley, Western Australia 6009, Australia.
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Ocampo G, Columbus JT. Molecular phylogenetics of suborder Cactineae (Caryophyllales), including insights into photosynthetic diversification and historical biogeography. AMERICAN JOURNAL OF BOTANY 2010; 97:1827-1847. [PMID: 21616822 DOI: 10.3732/ajb.1000227] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
PREMISE OF THE STUDY Phylogenetic relationships were investigated among the eight families (Anacampserotaceae, Basellaceae, Cactaceae, Didiereaceae, Halophytaceae, Montiaceae, Portulacaceae, Talinaceae) that form suborder Cactineae (= Portulacineae) of the Caryophyllales. In addition, photosynthesis diversification and historical biogeography were addressed. • METHODS Chloroplast DNA sequences, mostly noncoding, were used to estimate the phylogeny. Divergence times were calibrated using two Hawaiian Portulaca species, due to the lack of an unequivocal fossil record for Cactineae. Photosynthetic pathways were determined from carbon isotope ratios (δ(13)C) and leaf anatomy. • KEY RESULTS Maximum likelihood and Bayesian analyses were consistent with previous studies in that the suborder, almost all families, and the ACPT clade (Anacampserotaceae, Cactaceae, Portulacaceae, Talinaceae) were strongly supported as monophyletic; however, relationships among families remain uncertain. The age of Cactineae was estimated to be 18.8 Myr. Leaf anatomy and δ(13)C and were congruent in most cases, and inconsistencies between these pointed to photosynthetic intermediates. Reconstruction of photosynthesis diversification showed C(3) to be the ancestral pathway, a shift to C(4) in Portulacaceae, and five independent origins of Crassulacean acid metabolism (CAM). Cactineae were inferred to have originated in the New World. • CONCLUSIONS Although the C(3) pathway is inferred as the ancestral state in Cactineae, some CAM activity has been reported in the literature in almost every family of the suborder, leaving open the possibility that CAM may have one origin in the group. Incongruence among loci could be due to internal short branches, which possibly represent rapid radiations in response to increasing aridity in the Miocene.
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Affiliation(s)
- Gilberto Ocampo
- Rancho Santa Ana Botanic Garden and Claremont Graduate University, 1500 North College Avenue, Claremont, California 91711-3157 USA
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Biel KY, Fomina IR, Nazarova GN, Soukhovolsky VG, Khlebopros RG, Nishio JN. Untangling metabolic and spatial interactions of stress tolerance in plants. 1. Patterns of carbon metabolism within leaves. PROTOPLASMA 2010; 245:49-73. [PMID: 20449759 DOI: 10.1007/s00709-010-0135-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Accepted: 03/08/2010] [Indexed: 05/29/2023]
Abstract
The localization of the key photoreductive and oxidative processes and some stress-protective reactions within leaves of mesophytic C(3) plants were investigated. The role of light in determining the profile of Rubisco, glutamate oxaloacetate transaminase, catalase, fumarase, and cytochrome-c-oxidase across spinach leaves was examined by exposing leaves to illumination on either the adaxial or abaxial leaf surfaces. Oxygen evolution in fresh paradermal leaf sections and CO(2) gas exchange in whole leaves under adaxial or abaxial illumination was also examined. The results showed that the palisade mesophyll is responsible for the midday depression of photosynthesis in spinach leaves. The photosynthetic apparatus was more sensitive to the light environment than the respiratory apparatus. Additionally, examination of the paradermal leaf sections by optical microscopy allowed us to describe two new types of parenchyma in spinach-pirum mesophyll and pillow spongy mesophyll. A hypothesis that oxaloacetate may protect the upper leaf tissue from the destructive influence of active oxygen is presented. The application of mathematical modeling shows that the pattern of enzymatic distribution across leaves abides by the principle of maximal ecological utility. Light regulation of carbon metabolism across leaves is discussed.
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Affiliation(s)
- Karl Y Biel
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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Kocacinar F, McKown AD, Sage TL, Sage RF. Photosynthetic pathway influences xylem structure and function in Flaveria (Asteraceae). PLANT, CELL & ENVIRONMENT 2008; 31:1363-1376. [PMID: 18643957 DOI: 10.1111/j.1365-3040.2008.01847.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Higher water use efficiency (WUE) in C(4) plants may allow for greater xylem safety because transpiration rates are reduced. To evaluate this hypothesis, stem hydraulics and anatomy were compared in 16 C(3), C(3)-C(4) intermediate, C(4)-like and C(4) species in the genus Flaveria. The C(3) species had the highest leaf-specific conductivity (K(L)) compared with intermediate and C(4) species, with the perennial C(4) and C(4)-like species having the lowest K(L) values. Xylem-specific conductivity (K(S)) was generally highest in the C(3) species and lower in intermediate and C(4) species. Xylem vessels were shorter, narrower and more frequent in C(3)-C(4) intermediate, C(4)-like and C(4) species compared with C(3) species. WUE values were approximately double in the C(4)-like and C(4) species relative to the C(3)-C(4) and C(3) species. C(4)-like photosynthesis arose independently at least twice in Flaveria, and the trends in WUE and K(L) were consistent in both lineages. These correlated changes in WUE and K(L) indicate WUE increase promoted K(L) decline during C(4) evolution; however, any involvement of WUE comes late in the evolutionary sequence. C(3)-C(4) species exhibited reduced K(L) but little change in WUE compared to C(3) species, indicating that some reduction in hydraulic efficiency preceded increases in WUE.
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Affiliation(s)
- Ferit Kocacinar
- Faculty of Forestry, Kahramanmaras Sutcu Imam University, Merkez 46100 Kahramanmaras, Turkey
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Abstract
C4 photosynthesis is a series of anatomical and biochemical modifications that concentrate CO2 around the carboxylating enzyme Rubisco, thereby increasing photosynthetic efficiency in conditions promoting high rates of photorespiration. The C4 pathway independently evolved over 45 times in 19 families of angiosperms, and thus represents one of the most convergent of evolutionary phenomena. Most origins of C4 photosynthesis occurred in the dicots, with at least 30 lineages. C4 photosynthesis first arose in grasses, probably during the Oligocene epoch (24-35 million yr ago). The earliest C4 dicots are likely members of the Chenopodiaceae dating back 15-21 million yr; however, most C4 dicot lineages are estimated to have appeared relatively recently, perhaps less than 5 million yr ago. C4 photosynthesis in the dicots originated in arid regions of low latitude, implicating combined effects of heat, drought and/or salinity as important conditions promoting C4 evolution. Low atmospheric CO2 is a significant contributing factor, because it is required for high rates of photorespiration. Consistently, the appearance of C4 plants in the evolutionary record coincides with periods of increasing global aridification and declining atmospheric CO2 . Gene duplication followed by neo- and nonfunctionalization are the leading mechanisms for creating C4 genomes, with selection for carbon conservation traits under conditions promoting high photorespiration being the ultimate factor behind the origin of C4 photosynthesis. Contents Summary 341 I. Introduction 342 II. What is C4 photosynthesis? 343 III. Why did C4 photosynthesis evolve? 347 IV. Evolutionary lineages of C4 photosynthesis 348 V. Where did C4 photosynthesis evolve? 350 VI. How did C4 photosynthesis evolve? 352 VII. Molecular evolution of C4 photosynthesis 361 VIII. When did C4 photosynthesis evolve 362 IX. The rise of C4 photosynthesis in relation to climate and CO2 363 X. Final thoughts: the future evolution of C4 photosynthesis 365 Acknowledgements 365 References 365.
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Affiliation(s)
- Rowan F Sage
- Department of Botany, University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S 3B2, Canada
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REINERT FERNANDA, RUSSO CLAUDIAAM, SALLES LEANDROO. The evolution of CAM in the subfamily Pitcairnioideae (Bromeliaceae). Biol J Linn Soc Lond 2003. [DOI: 10.1046/j.1095-8312.2003.00238.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Reddy AR, Sundar D, Gnanam A. Photosynthetic flexibility in Pedilanthus tithymaloides poit, a CAM plant. JOURNAL OF PLANT PHYSIOLOGY 2003; 160:75-80. [PMID: 12685049 DOI: 10.1078/0176-1617-00851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The induction of CAM in Pedilanthus tithymaloides (Euphorbiaceae) under water-limited conditions was evaluated by following diurnal oscillations of CO2 fixation, titratable acidity and malic acid content in the leaf extracts. CAM induction was assessed by measuring the activities of phosphoenolpyruvate carboxylase (PEPC), NADH-malate dehydrogenase (MDH) and phosphoenolpyruvate caroxykinase (PEPCK) in the leaves as well. Drought resulted in large increases in the nocturnal acid accumulation and rates of CO2 uptake in the leaves of P. tithymaloides. The drought-induced CAM activity tended to be reversible after re-watering. Nevertheless, under well-watered conditions, plants of P. tithymaloides showed day time CO2 uptake patterns with less pronounced diurnal oscillations of organic acids. Our data indicate that although P. tithymaloides is a CAM plant, environmental variables like drought induce photosynthetic flexibility in this species. This type of plasticity in CAM and metabolic versatility in P. tithymaloides should be an adaptation for prolonged survival under natural adverse edaphic and microclimate situations.
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Witt GB, Berghammer LJ, Moll RJSBAEJ. Retrospective monitoring of rangeland vegetation change: ecohistory from deposits of sheep dung associated with shearing sheds. AUSTRAL ECOL 2001. [DOI: 10.1046/j.1442-9993.2000.01027.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Putative Causes and Consequences of Recycling CO2 via Crassulacean Acid Metabolism. CRASSULACEAN ACID METABOLISM 1996. [DOI: 10.1007/978-3-642-79060-7_13] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Transcriptional Activation of CAM Genes During Development and Environmental Stress. CRASSULACEAN ACID METABOLISM 1996. [DOI: 10.1007/978-3-642-79060-7_10] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Pilon-Smits EAH, Hart H’, van Brederode J. Evolutionary Aspects of Crassulacean Acid Metabolism in the Crassulaceae. CRASSULACEAN ACID METABOLISM 1996. [DOI: 10.1007/978-3-642-79060-7_24] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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RAVEN JOHNA. SYMPLASMIC PROTON FLUXES IN PHOTOSYNTHESIZING AND DEVELOPING PLANT TISSUES*. Biol Rev Camb Philos Soc 1995. [DOI: 10.1111/j.1469-185x.1995.tb01065.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Teese P. Intraspecific variation for CO 2 compensation point and differential growth among variants in a C 3-C 4 intermediate plant. Oecologia 1995; 102:371-376. [PMID: 28306848 DOI: 10.1007/bf00329804] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/1994] [Accepted: 01/04/1995] [Indexed: 10/26/2022]
Abstract
CO2 compenstation point (Γ), the concentration of CO2 at which photosynthesis and respiration are at equilibrium, is a commonly used diagnostic for the C4 photosynthetic pathway, since it reflects the reduced photorespiration that is a property of C4 photosynthesis. Geographic variation for Γ was examined within Flaveria linearis, a C3-C4 intermediate species. Collections from four widely separated Floridian populations were propagated in a greenhouse and measured for Γ. Little differentiation among populations was found, but significant within-population variation was present. Temperature is a hypothesized selective agent for the C4 photosynthetic pathway. To test this hypothesis, plants exhibiting a range of Γ were cloned and placed in growth chambers at 25°C and 40°C. After 7 weeks, Γ valves were remeasured and plants were harvested and weighed. There was a poor correlation between initial and final measures of Γ for a given genotype (r=0.38, P>0.1). Broad sense heritability for Γ was computed to be 0.10. At 25°C, there was no relationship between final size and Γ. At 40°C, more C4-like plants, as indicated by their low Γ, had grown larger. Differences in relative growth rate were attributable more to differences in net assimilation rate than in leaf area ratio. Taken together, these results demonstrate that although significant plasticity exists in the amount of photorespiration in this C3-C4 species, high temperature appears to be an effective selective agent for the reduction of photorespiration and the enhancement of C4-like traits.
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Affiliation(s)
- Paul Teese
- Department of Ecology and Evolution, State University of New York, 11794, Stony Brook, NY, USA
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