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For: Sugár IP, Biltonen RL, Mitchard N. Monte Carlo simulations of membranes: phase transition of small unilamellar dipalmitoylphosphatidylcholine vesicles. Methods Enzymol 1994;240:569-93. [PMID: 7823849 DOI: 10.1016/s0076-6879(94)40064-4] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Number Cited by Other Article(s)
1
Heimburg T. The excitable fluid mosaic. BIOCHIMICA ET BIOPHYSICA ACTA. BIOMEMBRANES 2023;1865:184104. [PMID: 36642342 DOI: 10.1016/j.bbamem.2022.184104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 11/23/2022] [Accepted: 12/13/2022] [Indexed: 01/15/2023]
2
Stelter D, Keyes T. Simulation of fluid/gel phase equilibrium in lipid vesicles. SOFT MATTER 2019;15:8102-8112. [PMID: 31588466 DOI: 10.1039/c9sm00854c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
3
Almeida PF. How to Determine Lipid Interactions in Membranes from Experiment Through the Ising Model. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019;35:21-40. [PMID: 30589556 DOI: 10.1021/acs.langmuir.8b03054] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
4
Wang C, Almeida PF, Regen SL. Net Interactions That Push Cholesterol Away from Unsaturated Phospholipids Are Driven by Enthalpy. Biochemistry 2018;57:6637-6643. [DOI: 10.1021/acs.biochem.8b00983] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
5
Almeida PF, Carter FE, Kilgour KM, Raymonda MH, Tejada E. Heat Capacity of DPPC/Cholesterol Mixtures: Comparison of Single Bilayers with Multibilayers and Simulations. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018;34:9798-9809. [PMID: 30088940 DOI: 10.1021/acs.langmuir.8b01774] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
6
Interaction of semiochemicals with model lipid membranes: A biophysical approach. Colloids Surf B Biointerfaces 2018;161:413-419. [PMID: 29121614 DOI: 10.1016/j.colsurfb.2017.11.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Revised: 10/18/2017] [Accepted: 11/01/2017] [Indexed: 12/20/2022]
7
Zeno WF, Rystov A, Sasaki DY, Risbud SH, Longo ML. Crowding-Induced Mixing Behavior of Lipid Bilayers: Examination of Mixing Energy, Phase, Packing Geometry, and Reversibility. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016;32:4688-4697. [PMID: 27096947 PMCID: PMC5519306 DOI: 10.1021/acs.langmuir.6b00831] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
8
Pinto OA, Bouchet AM, Frías MA, Disalvo EA. Microthermodynamic Interpretation of Fluid States from FTIR Measurements in Lipid Membranes: A Monte Carlo Study. J Phys Chem B 2014;118:10436-43. [DOI: 10.1021/jp5044078] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
9
Antonijevic T, Lancaster JL, Starobin JM. Modeling order-disorder transition in Low-Density Lipoprotein. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2014;2014:5220-5223. [PMID: 25571170 DOI: 10.1109/embc.2014.6944802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
10
Mosgaard LD, Jackson AD, Heimburg T. Fluctuations of systems in finite heat reservoirs with applications to phase transitions in lipid membranes. J Chem Phys 2013;139:125101. [DOI: 10.1063/1.4821837] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
11
Daly TA, Almeida PF, Regen SL. Sorting of lipidated peptides in fluid bilayers: a molecular-level investigation. J Am Chem Soc 2012;134:17245-52. [PMID: 22998217 PMCID: PMC3474883 DOI: 10.1021/ja3074825] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
12
Phase separation and fluctuations in mixtures of a saturated and an unsaturated phospholipid. Biophys J 2012;102:2526-35. [PMID: 22713568 DOI: 10.1016/j.bpj.2012.04.017] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2012] [Revised: 04/12/2012] [Accepted: 04/16/2012] [Indexed: 02/07/2023]  Open
13
Almeida PF, Best A, Hinderliter A. Monte Carlo simulation of protein-induced lipid demixing in a membrane with interactions derived from experiment. Biophys J 2012;101:1930-7. [PMID: 22004747 DOI: 10.1016/j.bpj.2011.09.015] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2011] [Revised: 09/06/2011] [Accepted: 09/09/2011] [Indexed: 12/31/2022]  Open
14
Rodgers JM, Sørensen J, de Meyer FJM, Schiøtt B, Smit B. Understanding the Phase Behavior of Coarse-Grained Model Lipid Bilayers through Computational Calorimetry. J Phys Chem B 2012;116:1551-69. [DOI: 10.1021/jp207837v] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
15
Kharakoz DP, Sizonenko TO, Galimova MK. A kinetic lattice model of liquid-to-gel phase transition in lipid membrane: Experimental calibration and physiological implications. Biophysics (Nagoya-shi) 2011. [DOI: 10.1134/s0006350911050071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
16
Almeida PF. A simple thermodynamic model of the liquid-ordered state and the interactions between phospholipids and cholesterol. Biophys J 2011;100:420-9. [PMID: 21244838 DOI: 10.1016/j.bpj.2010.12.3694] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2010] [Revised: 11/29/2010] [Accepted: 12/06/2010] [Indexed: 02/02/2023]  Open
17
Lipid bilayer pre-transition as the beginning of the melting process. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2009;1788:954-63. [DOI: 10.1016/j.bbamem.2009.01.007] [Citation(s) in RCA: 99] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2008] [Revised: 12/03/2008] [Accepted: 01/19/2009] [Indexed: 11/19/2022]
18
Sugár IP. On the inner structure and topology of clusters in two-component lipid bilayers. Comparison of monomer and dimer Ising models. J Phys Chem B 2008;112:11631-42. [PMID: 18729402 DOI: 10.1021/jp800945j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
19
Almeida PFF. Thermodynamics of lipid interactions in complex bilayers. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2008;1788:72-85. [PMID: 18775410 DOI: 10.1016/j.bbamem.2008.08.007] [Citation(s) in RCA: 167] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2008] [Revised: 07/29/2008] [Accepted: 08/06/2008] [Indexed: 12/12/2022]
20
Kharakoz DP, Panchelyuga MS, Tiktopulo EI, Shlyapnikova EA. Critical temperatures and a critical chain length in saturated diacylphosphatidylcholines: calorimetric, ultrasonic and Monte Carlo simulation study of chain-melting/ordering in aqueous lipid dispersions. Chem Phys Lipids 2007;150:217-28. [PMID: 17915200 DOI: 10.1016/j.chemphyslip.2007.08.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2007] [Revised: 08/03/2007] [Accepted: 08/22/2007] [Indexed: 11/30/2022]
21
Frazier ML, Wright JR, Pokorny A, Almeida PFF. Investigation of domain formation in sphingomyelin/cholesterol/POPC mixtures by fluorescence resonance energy transfer and Monte Carlo simulations. Biophys J 2007;92:2422-33. [PMID: 17218467 PMCID: PMC1864828 DOI: 10.1529/biophysj.106.100107] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
22
Almeida PFF, Pokorny A, Hinderliter A. Thermodynamics of membrane domains. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2005;1720:1-13. [PMID: 16472555 DOI: 10.1016/j.bbamem.2005.12.004] [Citation(s) in RCA: 109] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2005] [Revised: 12/12/2005] [Accepted: 12/13/2005] [Indexed: 10/25/2022]
23
Hac AE, Seeger HM, Fidorra M, Heimburg T. Diffusion in two-component lipid membranes--a fluorescence correlation spectroscopy and monte carlo simulation study. Biophys J 2004;88:317-33. [PMID: 15501937 PMCID: PMC1305009 DOI: 10.1529/biophysj.104.040444] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Sengupta P, Singh RRP, Cox DL, Slepoy A. Lateral organization of cholesterol molecules in lipid-cholesterol assemblies. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004;70:021902. [PMID: 15447510 DOI: 10.1103/physreve.70.021902] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2003] [Indexed: 05/24/2023]
25
Ivanova VP, Makarov IM, Schäffer TE, Heimburg T. Analyzing heat capacity profiles of peptide-containing membranes: cluster formation of gramicidin A. Biophys J 2003;84:2427-39. [PMID: 12668450 PMCID: PMC1302808 DOI: 10.1016/s0006-3495(03)75047-4] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
26
Grabitz P, Ivanova VP, Heimburg T. Relaxation kinetics of lipid membranes and its relation to the heat capacity. Biophys J 2002;82:299-309. [PMID: 11751317 PMCID: PMC1302470 DOI: 10.1016/s0006-3495(02)75395-2] [Citation(s) in RCA: 84] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
27
Sugár IP, Michonova-Alexova E, Chong PL. Geometrical properties of gel and fluid clusters in DMPC/DSPC bilayers: Monte Carlo simulation approach using a two-state model. Biophys J 2001;81:2425-41. [PMID: 11606260 PMCID: PMC1301714 DOI: 10.1016/s0006-3495(01)75890-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
28
Pokorny A, Almeida PF, Vaz WL. Association of a fluorescent amphiphile with lipid bilayer vesicles in regions of solid-liquid-disordered phase coexistence. Biophys J 2001;80:1384-94. [PMID: 11222299 PMCID: PMC1301330 DOI: 10.1016/s0006-3495(01)76111-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
29
Sugár IP, Biltonen RL. Structure-function relationships in two-component phospholipid bilayers: Monte Carlo simulation approach using a two-state model. Methods Enzymol 2001;323:340-72. [PMID: 10944759 DOI: 10.1016/s0076-6879(00)23373-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
30
Heimburg T. A model for the lipid pretransition: coupling of ripple formation with the chain-melting transition. Biophys J 2000;78:1154-65. [PMID: 10692305 PMCID: PMC1300718 DOI: 10.1016/s0006-3495(00)76673-2] [Citation(s) in RCA: 203] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
31
Schneider MF, Marsh D, Jahn W, Kloesgen B, Heimburg T. Network formation of lipid membranes: triggering structural transitions by chain melting. Proc Natl Acad Sci U S A 1999;96:14312-7. [PMID: 10588702 PMCID: PMC24433 DOI: 10.1073/pnas.96.25.14312] [Citation(s) in RCA: 103] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
32
Sugár IP, Thompson TE, Biltonen RL. Monte Carlo simulation of two-component bilayers: DMPC/DSPC mixtures. Biophys J 1999;76:2099-110. [PMID: 10096905 PMCID: PMC1300183 DOI: 10.1016/s0006-3495(99)77366-2] [Citation(s) in RCA: 80] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]  Open
33
Burack WR, Dibble AR, Biltonen RL. The relationship between compositional phase separation and vesicle morphology: implications for the regulation of phospholipase A2 by membrane structure. Chem Phys Lipids 1997;90:87-95. [PMID: 9450323 DOI: 10.1016/s0009-3084(97)00084-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
34
Jerala R, Almeida PF, Biltonen RL. Simulation of the gel-fluid transition in a membrane composed of lipids with two connected acyl chains: application of a dimer-move step. Biophys J 1996;71:609-15. [PMID: 8842200 PMCID: PMC1233518 DOI: 10.1016/s0006-3495(96)79261-5] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
35
Heimburg T, Biltonen RL. A Monte Carlo simulation study of protein-induced heat capacity changes and lipid-induced protein clustering. Biophys J 1996;70:84-96. [PMID: 8770189 PMCID: PMC1224911 DOI: 10.1016/s0006-3495(96)79551-6] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
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