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For: Karam JD, Konigsberg WH. DNA polymerase of the T4-related bacteriophages. Prog Nucleic Acid Res Mol Biol 2000;64:65-96. [PMID: 10697407 DOI: 10.1016/s0079-6603(00)64002-3] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Number Cited by Other Article(s)
1
Czernecki D, Nourisson A, Legrand P, Delarue M. Reclassification of family A DNA polymerases reveals novel functional subfamilies and distinctive structural features. Nucleic Acids Res 2023;51:4488-4507. [PMID: 37070157 PMCID: PMC10201439 DOI: 10.1093/nar/gkad242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 03/07/2023] [Accepted: 03/24/2023] [Indexed: 04/19/2023]  Open
2
Bedin F, Benoit V, Ferrazzi E, Aufradet E, Boulet L, Rubens A, Dalbon P, Imbaud P. Procalcitonin detection in human plasma specimens using a fast version of proximity extension assay. PLoS One 2023;18:e0281157. [PMID: 36795693 PMCID: PMC9934411 DOI: 10.1371/journal.pone.0281157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 01/13/2023] [Indexed: 02/17/2023]  Open
3
Boezen D, Ali G, Wang M, Wang X, van der Werf W, Vlak JM, Zwart MP. Empirical estimates of the mutation rate for an alphabaculovirus. PLoS Genet 2022;18:e1009806. [PMID: 35666722 PMCID: PMC9203023 DOI: 10.1371/journal.pgen.1009806] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 06/16/2022] [Accepted: 04/27/2022] [Indexed: 01/02/2023]  Open
4
Morcinek-Orłowska J, Zdrojewska K, Węgrzyn A. Bacteriophage-Encoded DNA Polymerases-Beyond the Traditional View of Polymerase Activities. Int J Mol Sci 2022;23:635. [PMID: 35054821 PMCID: PMC8775771 DOI: 10.3390/ijms23020635] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 12/28/2021] [Accepted: 01/06/2022] [Indexed: 02/04/2023]  Open
5
Patil S, Kondabagil K. Coevolutionary and Phylogenetic Analysis of Mimiviral Replication Machinery Suggest the Cellular Origin of Mimiviruses. Mol Biol Evol 2021;38:2014-2029. [PMID: 33570580 PMCID: PMC8097291 DOI: 10.1093/molbev/msab003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
6
Fidelity of DNA replication-a matter of proofreading. Curr Genet 2018;64:985-996. [PMID: 29500597 PMCID: PMC6153641 DOI: 10.1007/s00294-018-0820-1] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 02/27/2018] [Accepted: 02/28/2018] [Indexed: 01/29/2023]
7
Stodola JL, Stith CM, Burgers PM. Proficient Replication of the Yeast Genome by a Viral DNA Polymerase. J Biol Chem 2016;291:11698-705. [PMID: 27072134 DOI: 10.1074/jbc.m116.728741] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Indexed: 11/06/2022]  Open
8
Xia S, Konigsberg WH. RB69 DNA polymerase structure, kinetics, and fidelity. Biochemistry 2014;53:2752-67. [PMID: 24720884 PMCID: PMC4018061 DOI: 10.1021/bi4014215] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
9
Hjorleifsdottir S, Aevarsson A, Hreggvidsson GO, Fridjonsson OH, Kristjansson JK. Isolation, growth and genome of the Rhodothermus RM378 thermophilic bacteriophage. Extremophiles 2013;18:261-70. [PMID: 24318108 DOI: 10.1007/s00792-013-0613-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2013] [Accepted: 11/21/2013] [Indexed: 01/04/2023]
10
Xia S, Wang M, Lee HR, Sinha A, Blaha G, Christian T, Wang J, Konigsberg W. Variation in mutation rates caused by RB69pol fidelity mutants can be rationalized on the basis of their kinetic behavior and crystal structures. J Mol Biol 2011;406:558-70. [PMID: 21216248 PMCID: PMC3059800 DOI: 10.1016/j.jmb.2010.12.033] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2010] [Revised: 12/17/2010] [Accepted: 12/21/2010] [Indexed: 01/08/2023]
11
Mueser TC, Hinerman JM, Devos JM, Boyer RA, Williams KJ. Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives. Virol J 2010;7:359. [PMID: 21129204 PMCID: PMC3012046 DOI: 10.1186/1743-422x-7-359] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2010] [Accepted: 12/03/2010] [Indexed: 12/13/2022]  Open
12
Meng X, Zhou Y, Lee EYC, Lee MYWT, Frick DN. The p12 subunit of human polymerase delta modulates the rate and fidelity of DNA synthesis. Biochemistry 2010;49:3545-54. [PMID: 20334433 PMCID: PMC2860660 DOI: 10.1021/bi100042b] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
13
Comeau AM, Arbiol C, Krisch HM. Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome. Mol Biol Evol 2010;27:1935-44. [PMID: 20231334 PMCID: PMC2908710 DOI: 10.1093/molbev/msq076] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
14
Arbiol C, Comeau AM, Kutateladze M, Adamia R, Krisch HM. Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes. Genome Biol Evol 2010;2:140-52. [PMID: 20333230 PMCID: PMC2839356 DOI: 10.1093/gbe/evq006] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/26/2010] [Indexed: 11/12/2022]  Open
15
Functional viral metagenomics and the next generation of molecular tools. Trends Microbiol 2009;18:20-9. [PMID: 19896852 DOI: 10.1016/j.tim.2009.10.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2009] [Revised: 10/14/2009] [Accepted: 10/19/2009] [Indexed: 12/13/2022]
16
Ceyssens PJ, Miroshnikov K, Mattheus W, Krylov V, Robben J, Noben JP, Vanderschraeghe S, Sykilinda N, Kropinski AM, Volckaert G, Mesyanzhinov V, Lavigne R. Comparative analysis of the widespread and conserved PB1-like viruses infectingPseudomonas aeruginosa. Environ Microbiol 2009;11:2874-83. [DOI: 10.1111/j.1462-2920.2009.02030.x] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Jozwiakowski SK, Connolly BA. Plasmid-based lacZalpha assay for DNA polymerase fidelity: application to archaeal family-B DNA polymerase. Nucleic Acids Res 2009;37:e102. [PMID: 19515939 PMCID: PMC2731893 DOI: 10.1093/nar/gkp494] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
18
Kurzepa A, Dabrowska K, Switała-Jeleń K, Górski A. Molecular modification of T4 bacteriophage proteins and its potential application - review. Folia Microbiol (Praha) 2009;54:5-15. [PMID: 19330539 DOI: 10.1007/s12223-009-0002-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2008] [Revised: 06/23/2008] [Indexed: 11/25/2022]
19
Sheriff A, Motea E, Lee I, Berdis AJ. Mechanism and dynamics of translesion DNA synthesis catalyzed by the Escherichia coli Klenow fragment. Biochemistry 2008;47:8527-37. [PMID: 18652487 DOI: 10.1021/bi800324r] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
20
Comeau AM, Krisch HM. The Capsid of the T4 Phage Superfamily: The Evolution, Diversity, and Structure of Some of the Most Prevalent Proteins in the Biosphere. Mol Biol Evol 2008;25:1321-32. [DOI: 10.1093/molbev/msn080] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
21
Lee HW, Lee HJ, Hong CM, Baker DJ, Bhatia R, O’Connor TR. Monitoring repair of DNA damage in cell lines and human peripheral blood mononuclear cells. Anal Biochem 2007;365:246-59. [PMID: 17449003 PMCID: PMC3614353 DOI: 10.1016/j.ab.2007.03.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2006] [Revised: 03/13/2007] [Accepted: 03/16/2007] [Indexed: 11/20/2022]
22
Comeau AM, Bertrand C, Letarov A, Tétart F, Krisch HM. Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 2007;362:384-96. [PMID: 17289101 DOI: 10.1016/j.virol.2006.12.031] [Citation(s) in RCA: 127] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2006] [Revised: 12/04/2006] [Accepted: 12/13/2006] [Indexed: 11/22/2022]
23
Sun S, Geng L, Shamoo Y. Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity. Proteins 2006;65:231-8. [PMID: 16881051 DOI: 10.1002/prot.21088] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
24
Sommer N, Depping R, Piotrowski M, Rüger W. Bacteriophage T4 α-glucosyltransferase: a novel interaction with gp45 and aspects of the catalytic mechanism. Biochem Biophys Res Commun 2004;323:809-15. [PMID: 15381072 DOI: 10.1016/j.bbrc.2004.08.170] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2004] [Indexed: 11/23/2022]
25
Reineks EZ, Berdis AJ. Evaluating the effects of enhanced processivity and metal ions on translesion DNA replication catalyzed by the bacteriophage T4 DNA polymerase. J Mol Biol 2003;328:1027-45. [PMID: 12729739 DOI: 10.1016/s0022-2836(03)00370-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
26
Desplats C, Krisch HM. The diversity and evolution of the T4-type bacteriophages. Res Microbiol 2003;154:259-67. [PMID: 12798230 DOI: 10.1016/s0923-2508(03)00069-x] [Citation(s) in RCA: 93] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
27
Bebenek A, Carver GT, Dressman HK, Kadyrov FA, Haseman JK, Petrov V, Konigsberg WH, Karam JD, Drake JW. Dissecting the fidelity of bacteriophage RB69 DNA polymerase: site-specific modulation of fidelity by polymerase accessory proteins. Genetics 2002;162:1003-18. [PMID: 12454051 PMCID: PMC1462346 DOI: 10.1093/genetics/162.3.1003] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
28
Petrov VM, Ng SS, Karam JD. Protein determinants of RNA binding by DNA polymerase of the T4-related bacteriophage RB69. J Biol Chem 2002;277:33041-8. [PMID: 12087102 DOI: 10.1074/jbc.m204754200] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
29
Petrov VM, Karam JD. RNA determinants of translational operator recognition by the DNA polymerases of bacteriophages T4 and RB69. Nucleic Acids Res 2002;30:3341-8. [PMID: 12140318 PMCID: PMC137073 DOI: 10.1093/nar/gkf447] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
30
Desplats C, Dez C, Tétart F, Eleaume H, Krisch HM. Snapshot of the genome of the pseudo-T-even bacteriophage RB49. J Bacteriol 2002;184:2789-804. [PMID: 11976309 PMCID: PMC135041 DOI: 10.1128/jb.184.10.2789-2804.2002] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
31
Benkovic SJ, Valentine AM, Salinas F. Replisome-mediated DNA replication. Annu Rev Biochem 2002;70:181-208. [PMID: 11395406 DOI: 10.1146/annurev.biochem.70.1.181] [Citation(s) in RCA: 255] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
32
Franklin MC, Wang J, Steitz TA. Structure of the replicating complex of a pol alpha family DNA polymerase. Cell 2001;105:657-67. [PMID: 11389835 DOI: 10.1016/s0092-8674(01)00367-1] [Citation(s) in RCA: 437] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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