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Metzdorf K, Fricke S, Balia MT, Korte M, Zagrebelsky M. Nogo-A Modulates the Synaptic Excitation of Hippocampal Neurons in a Ca 2+-Dependent Manner. Cells 2021; 10:cells10092299. [PMID: 34571950 PMCID: PMC8467072 DOI: 10.3390/cells10092299] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 08/27/2021] [Accepted: 08/30/2021] [Indexed: 11/16/2022] Open
Abstract
A tight regulation of the balance between inhibitory and excitatory synaptic transmission is a prerequisite for synaptic plasticity in neuronal networks. In this context, the neurite growth inhibitor membrane protein Nogo-A modulates synaptic plasticity, strength, and neurotransmitter receptor dynamics. However, the molecular mechanisms underlying these actions are unknown. We show that Nogo-A loss-of-function in primary mouse hippocampal cultures by application of a function-blocking antibody leads to higher excitation following a decrease in GABAARs at inhibitory and an increase in the GluA1, but not GluA2 AMPAR subunit at excitatory synapses. This unbalanced regulation of AMPAR subunits results in the incorporation of Ca2+-permeable GluA2-lacking AMPARs and increased intracellular Ca2+ levels due to a higher Ca2+ influx without affecting its release from the internal stores. Increased neuronal activation upon Nogo-A loss-of-function prompts the phosphorylation of the transcription factor CREB and the expression of c-Fos. These results contribute to the understanding of the molecular mechanisms underlying the regulation of the excitation/inhibition balance and thereby of plasticity in the brain.
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Affiliation(s)
- Kristin Metzdorf
- Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, D-38106 Braunschweig, Germany; (K.M.); (M.T.B.); (M.K.)
- Helmholtz Centre for Infection Research, AG NIND, Inhoffenstr. 7, D-38124 Braunschweig, Germany
| | - Steffen Fricke
- Division of Cell Physiology, Zoological Institute, TU Braunschweig, D-38106 Braunschweig, Germany;
| | - Maria Teresa Balia
- Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, D-38106 Braunschweig, Germany; (K.M.); (M.T.B.); (M.K.)
| | - Martin Korte
- Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, D-38106 Braunschweig, Germany; (K.M.); (M.T.B.); (M.K.)
- Helmholtz Centre for Infection Research, AG NIND, Inhoffenstr. 7, D-38124 Braunschweig, Germany
| | - Marta Zagrebelsky
- Division of Cellular Neurobiology, Zoological Institute, TU Braunschweig, D-38106 Braunschweig, Germany; (K.M.); (M.T.B.); (M.K.)
- Correspondence: ; Tel.: +49-(0)-531-3913225
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Akil AE, Rosenbaum R, Josić K. Balanced networks under spike-time dependent plasticity. PLoS Comput Biol 2021; 17:e1008958. [PMID: 33979336 PMCID: PMC8143429 DOI: 10.1371/journal.pcbi.1008958] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Revised: 05/24/2021] [Accepted: 04/12/2021] [Indexed: 11/28/2022] Open
Abstract
The dynamics of local cortical networks are irregular, but correlated. Dynamic excitatory–inhibitory balance is a plausible mechanism that generates such irregular activity, but it remains unclear how balance is achieved and maintained in plastic neural networks. In particular, it is not fully understood how plasticity induced changes in the network affect balance, and in turn, how correlated, balanced activity impacts learning. How do the dynamics of balanced networks change under different plasticity rules? How does correlated spiking activity in recurrent networks change the evolution of weights, their eventual magnitude, and structure across the network? To address these questions, we develop a theory of spike–timing dependent plasticity in balanced networks. We show that balance can be attained and maintained under plasticity–induced weight changes. We find that correlations in the input mildly affect the evolution of synaptic weights. Under certain plasticity rules, we find an emergence of correlations between firing rates and synaptic weights. Under these rules, synaptic weights converge to a stable manifold in weight space with their final configuration dependent on the initial state of the network. Lastly, we show that our framework can also describe the dynamics of plastic balanced networks when subsets of neurons receive targeted optogenetic input. Animals are able to learn complex tasks through changes in individual synapses between cells. Such changes lead to the coevolution of neural activity patterns and the structure of neural connectivity, but the consequences of these interactions are not fully understood. We consider plasticity in model neural networks which achieve an average balance between the excitatory and inhibitory synaptic inputs to different cells, and display cortical–like, irregular activity. We extend the theory of balanced networks to account for synaptic plasticity and show which rules can maintain balance, and which will drive the network into a different state. This theory of plasticity can provide insights into the relationship between stimuli, network dynamics, and synaptic circuitry.
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Affiliation(s)
- Alan Eric Akil
- Department of Mathematics, University of Houston, Houston, Texas, United States of America
| | - Robert Rosenbaum
- Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, Indiana, United States of America
- Interdisciplinary Center for Network Science and Applications, University of Notre Dame, Notre Dame, Indiana, United States of America
| | - Krešimir Josić
- Department of Mathematics, University of Houston, Houston, Texas, United States of America
- Department of Biology and Biochemistry, University of Houston, Houston, Texas, United States of America
- * E-mail:
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Seven Properties of Self-Organization in the Human Brain. BIG DATA AND COGNITIVE COMPUTING 2020. [DOI: 10.3390/bdcc4020010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The principle of self-organization has acquired a fundamental significance in the newly emerging field of computational philosophy. Self-organizing systems have been described in various domains in science and philosophy including physics, neuroscience, biology and medicine, ecology, and sociology. While system architecture and their general purpose may depend on domain-specific concepts and definitions, there are (at least) seven key properties of self-organization clearly identified in brain systems: (1) modular connectivity, (2) unsupervised learning, (3) adaptive ability, (4) functional resiliency, (5) functional plasticity, (6) from-local-to-global functional organization, and (7) dynamic system growth. These are defined here in the light of insight from neurobiology, cognitive neuroscience and Adaptive Resonance Theory (ART), and physics to show that self-organization achieves stability and functional plasticity while minimizing structural system complexity. A specific example informed by empirical research is discussed to illustrate how modularity, adaptive learning, and dynamic network growth enable stable yet plastic somatosensory representation for human grip force control. Implications for the design of “strong” artificial intelligence in robotics are brought forward.
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Big Data Analytics in Government: Improving Decision Making for R&D Investment in Korean SMEs. SUSTAINABILITY 2019. [DOI: 10.3390/su12010202] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
To expand the field of governmental applications of Big Data analytics, this study presents a case of data-driven decision-making using information on research and development (R&D) projects in Korea. The Korean government has continuously expanded the proportion of its R&D investment in small and medium-size enterprises to improve the commercialization performance of national R&D projects. However, the government has struggled with the so-called “Korea R&D Paradox”, which refers to how performance has lagged despite the high level of investment in R&D. Using data from 48,309 national R&D projects carried out by enterprises from 2013 to 2017, we perform a cluster analysis and decision tree analysis to derive the determinants of their commercialization performance. This study provides government entities with insights into how they might adjust their approach to Big Data analytics to improve the efficiency of R&D investment in small- and medium-sized enterprises.
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Shan J, Wang X, Zhou H, Han S, Riza DFA, Kondo N. Variable selection based on clustering analysis for improvement of polyphenols prediction in green tea using synchronous fluorescence spectra. Methods Appl Fluoresc 2018; 6:025006. [PMID: 29422455 DOI: 10.1088/2050-6120/aaae0a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Synchronous fluorescence spectra, combined with multivariate analysis were used to predict flavonoids content in green tea rapidly and nondestructively. This paper presented a new and efficient spectral intervals selection method called clustering based partial least square (CL-PLS), which selected informative wavelengths by combining clustering concept and partial least square (PLS) methods to improve models' performance by synchronous fluorescence spectra. The fluorescence spectra of tea samples were obtained and k-means and kohonen-self organizing map clustering algorithms were carried out to cluster full spectra into several clusters, and sub-PLS regression model was developed on each cluster. Finally, CL-PLS models consisting of gradually selected clusters were built. Correlation coefficient (R) was used to evaluate the effect on prediction performance of PLS models. In addition, variable influence on projection partial least square (VIP-PLS), selectivity ratio partial least square (SR-PLS), interval partial least square (iPLS) models and full spectra PLS model were investigated and the results were compared. The results showed that CL-PLS presented the best result for flavonoids prediction using synchronous fluorescence spectra.
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Affiliation(s)
- Jiajia Shan
- School of Food and Environment, Dalian University of Technology, Panjin, 124221, People's Republic of China
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Gupta P, Markan CM. An adaptable neuromorphic model of orientation selectivity based on floating gate dynamics. Front Neurosci 2014; 8:54. [PMID: 24765062 PMCID: PMC3980111 DOI: 10.3389/fnins.2014.00054] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2013] [Accepted: 03/09/2014] [Indexed: 11/21/2022] Open
Abstract
The biggest challenge that the neuromorphic community faces today is to build systems that can be considered truly cognitive. Adaptation and self-organization are the two basic principles that underlie any cognitive function that the brain performs. If we can replicate this behavior in hardware, we move a step closer to our goal of having cognitive neuromorphic systems. Adaptive feature selectivity is a mechanism by which nature optimizes resources so as to have greater acuity for more abundant features. Developing neuromorphic feature maps can help design generic machines that can emulate this adaptive behavior. Most neuromorphic models that have attempted to build self-organizing systems, follow the approach of modeling abstract theoretical frameworks in hardware. While this is good from a modeling and analysis perspective, it may not lead to the most efficient hardware. On the other hand, exploiting hardware dynamics to build adaptive systems rather than forcing the hardware to behave like mathematical equations, seems to be a more robust methodology when it comes to developing actual hardware for real world applications. In this paper we use a novel time-staggered Winner Take All circuit, that exploits the adaptation dynamics of floating gate transistors, to model an adaptive cortical cell that demonstrates Orientation Selectivity, a well-known biological phenomenon observed in the visual cortex. The cell performs competitive learning, refining its weights in response to input patterns resembling different oriented bars, becoming selective to a particular oriented pattern. Different analysis performed on the cell such as orientation tuning, application of abnormal inputs, response to spatial frequency and periodic patterns reveal close similarity between our cell and its biological counterpart. Embedded in a RC grid, these cells interact diffusively exhibiting cluster formation, making way for adaptively building orientation selective maps in silicon.
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Affiliation(s)
- Priti Gupta
- VLSI Design Technology Lab, Department of Physics and Computer Science, Dayalbagh Educational Institute Agra, Uttar Pradesh, India
| | - C M Markan
- VLSI Design Technology Lab, Department of Physics and Computer Science, Dayalbagh Educational Institute Agra, Uttar Pradesh, India
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Markan CM, Gupta P, Bansal M. An adaptive neuromorphic model of ocular dominance map using floating gate 'synapse'. Neural Netw 2013; 45:117-33. [PMID: 23648171 DOI: 10.1016/j.neunet.2013.04.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2012] [Revised: 04/02/2013] [Accepted: 04/04/2013] [Indexed: 11/28/2022]
Abstract
A novel analogue CMOS design of a cortical cell, that computes weighted sum of inputs, is presented. The cell's feedback regime exploits the adaptation dynamics of floating gate pFET 'synapse' to perform competitive learning amongst input weights as time-staggered winner take all. A learning rate parameter regulates adaptation time and a bias enforces resource limitation by restricting the number of input branches and winners in a competition. When learning ends, the cell's response favours one input pattern over others to exhibit feature selectivity. Embedded in a 2-D RC grid, these feature selective cells are capable of performing a symmetry breaking pattern formation, observed in some reaction-diffusion models of cortical feature map formation, e.g. ocular dominance. Close similarity with biological networks in terms of adaptability and long term memory indicates that the cell's design is ideally suited for analogue VLSI implementation of Self-Organizing Feature Map (SOFM) models of cortical feature maps.
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Affiliation(s)
- C M Markan
- Department of Physics & Computer Science, Dayalbagh Educational Institute (Deemed University), Dayalbagh, Agra-282005, India.
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Harré MS. From Amateur to Professional: A Neuro-cognitive Model of Categories and Expert Development. Minds Mach (Dordr) 2013. [DOI: 10.1007/s11023-013-9305-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Gliozzi V, Mayor J, Hu JF, Plunkett K. Labels as Features (Not Names) for Infant Categorization: A Neurocomputational Approach. Cogn Sci 2009; 33:709-38. [DOI: 10.1111/j.1551-6709.2009.01026.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Kaipainen M, Ilmonen T. Period detection and representation by recurrent oscillatory self-organizing map. Neurocomputing 2003. [DOI: 10.1016/s0925-2312(02)00670-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Bamford T. Self-organized maps of sensory events. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2003; 361:1177-1186. [PMID: 12889459 DOI: 10.1098/rsta.2003.1192] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Affiliation(s)
- Teuvo Bamford
- Helsinki University of Technology, Neural Networks Research Centre, PO Box 5400, 02015 HUT, Finland
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Rallo R, Ferre-Giné J, Arenas A, Giralt F. Neural virtual sensor for the inferential prediction of product quality from process variables. Comput Chem Eng 2002. [DOI: 10.1016/s0098-1354(02)00148-5] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Swindale N, Bauer H. Application of Kohonen's self–organizing feature map algorithm to cortical maps of orientation and direction preference. Proc Biol Sci 1998. [DOI: 10.1098/rspb.1998.0367] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- N.V. Swindale
- Department of Ophthalmology, University of British Columbia, 2550 Willow Street, Vancouver, British Columbia, CanadaV5Z 3N9
| | - H. Bauer
- Max–Planck–Institut für Strömungsforschung, POBox 2853, 37018 Göttingen, Germany
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