LIGAND SUBSTITUTION REACTIONS

The inorganic chemistry of the cobalt corrinoids - an update

The inorganic chemistry of the cobalt corrinoids, derivatives of vitamin B₁₂, is reviewed, with particular emphasis on equilibrium constants for, and kinetics of, their axial ligand substitution reactions. The role the corrin ligand plays in controlling and modifying the properties of the metal ion is emphasised. Other aspects of the chemistry of these compounds, including their structure, corrinoid complexes with metals other than cobalt, the redox chemistry of the cobalt corrinoids and their chemical redox reactions, and their photochemistry are discussed. Their role as catalysts in non-biological reactions and aspects of their organometallic chemistry are briefly mentioned. Particular mention is made of the role that computational methods - and especially DFT calculations - have played in developing our understanding of the inorganic chemistry of these compounds. A brief overview of the biological chemistry of the B₁₂-dependent enzymes is also given for the reader's convenience.

Zn/Cu Complexes Constructed through Selective in Situ Br−Cl Exchange: Synthesis, Structures, Properties, and DFT Insights into the Cu-Catalyzed Mechanism

Two coordination polymers (CPs) [Cu2(L1)(µ3-OH)(H2O)]n (1) and {[Zn4(L)2(4,4′-bipy)3]•4H2O}n (2) were synthesized under solvothermal conditions. It is unexpectedly found the transformation of aryl−Br to aryl−Cl (Br-Cl exchange) in the formation of...

Anion-Recognition Studies of a Rhenium(I) 4-Mercaptopyridine Compound and Its Ligand-Coupling Products

The reaction of Re(CO)₅Cl with 4-mercaptopyridine (4-PySH) led to the formation of [Re(CO)₃(4-HPyS)₃]Cl (1), showing three hydrogen-bonding donors of 4-PySH ligands as well as a characteristic ligand-to-metal charge-transfer absorption at ca. 380 nm. In this regard, a variety of anions, i.e., CN^-, OAc^-, F^-, Cl^-, Br^-, I^-, PF₆^-, NO₃^-, ClO₄^-, and H₂PO₄^-, were examined to study anion-recognition studies through hydrogen-bonding functionalities. Upon the addition of CN^- to a methanolic solution of complex 1, a remarkable spectral change with an isosbestic point at ca. 314 nm in the absorption spectra was observed, with a binding constant (K_b) calculated to be 24770 M^-1. Moreover, the OAc^- anion also shows a similar trend, but a mild spectral change, with K_b calculated to be 2170 M^-1. Unlike those of CN^- and OAc^-, the addition of F^-, Cl^-, Br^-, and I^- anions causes a less pronounced spectral change with an isosbestic point at ca. 350 nm and K_b calculated to be 2863-750 M^-1. However, almost no spectral change can be observed for other anions (i.e., PF₆^-, NO₃^-, H₂PO₄^-, and ClO₄^-). Interestingly, the molecular loops of [Re(CO)₃Cl(Py₂S₂)]₂ (2; Py₂S₂ = 4,4'-dipyridyl disulfide) and [Re(CO)₃Cl(Py₂S)_0.35(Py₂S₂)_0.65]₂ (3; Py₂S = 4,4'-dipyridyl sulfide) can be isolated and structurally characterized by X-ray diffraction, where those crystals were grown from diethyl ether diffusion into a methanolic solution of complex 1 with [Bu₄N]CN and [Bu₄N]NO₃, respectively. It is noted that such unusual ligand-coupling reactions toward the homoligand and hybrid-ligand loops of complexes 2 and 3 can be achieved at room temperature in this study.

Molecular ReI Cages: Structural and Luminescent Properties

Versatile building block [{Re(CO)₄ }₃ (C₃ N₃ S₃ )] (1 a; C₃ N₃ S₃ =cyanurate trianion) reacts with linear dipyridyl ligands [i.e., pyrazine (pz), 4,4'-bipyridine (bpy), 1,2-bis(4-pyridyl)ethylene (bpe), bis(4-pyridyl)acetylene (bpa), and 1,4-bis(pyridyl-4-ylethynyl)benzene (bpb)] and a tripyridyl ligand [1,3,5-tris(4-pyridylethynyl)benzene (tpb)] to afford a series of molecular cages [{Re(CO)₃ }₆ (L)₃ (C₃ N₃ S₃ )₂ ] [L=pz (2), bpy (3), bpe (4), bpa (5), bpb (6)] and [{Re(CO)₃ }₉ (tpb)₃ (C₃ N₃ S₃ )₃ ] (7) under solvothermal conditions. Various structural dimensions and motifs can be systematically tuned and obtained by using different dipyridyl and tripyridyl ligands in the reactions. The molecular cages of hexanuclear complexes 2-6 containing dipyridyl ligands feature interesting trigonal-prismatic structures with different dimensions. Furthermore, nonanuclear complex 7 has a novel triangular-star structure, and three benzene rings of tpb ligands form a triple-decker arrangement with significant π⋅⋅⋅π interactions having distances of 3.490(1) and 3.528(1) Å. In addition, molecular cages 1-3 and 5-7 exhibit luminescence in the solid state, and their luminescent properties were also studied.

Two new metal–organic frameworks based on tetrazole–heterocyclic ligands accompanied by in situ ligand formation

Two new MOFs have been constructed by the Dimroth rearrangement of the in situ generated organic ligand 5-((2H-tetrazol-5-yl)amino)isophthalic acid (H₃L).

Kinetic Studies of the Coordination of Mono- and Ditopic Ligands with First Row Transition Metal Ions

The reactions of the ditopic ligand 1,4-bis(2,2':6',2″-terpyridin-4'-yl)benzene (1) as well as the monotopic ligands 4'-phenyl-2,2':6',2″-terpyridine (2) and 2,2':6',2″-terpyridine (3) with Fe(2+), Co(2+), and Ni(2+) in solution are studied. While the reaction of 1 with Fe(2+), Co(2+), and Ni(2+) results in metallo-supramolecular coordination polyelectrolytes (MEPEs), ligands 2 and 3 give mononuclear complexes. All compounds are analyzed by UV/vis and fluorescence spectroscopy. Fluorescence spectroscopy indicates that protonation as well as coordination to Zn(2+) leads to an enhanced fluorescence of the terpyridine ligands. In contrast, Fe(2+), Co(2+), or Ni(2+) quench the fluorescence of the ligands. The kinetics of the reactions are studied by stopped-flow fluorescence spectroscopy. Analysis of the measured data is presented and the full kinetic rate laws for the coordination of the terpyridine ligands 1, 2, and 3 to Fe(2+), Co(2+), and Ni(2+) are presented. The coordination occurs within a few seconds, and the rate constant increases in the order Ni(2+) < Co(2+) < Fe(2+). With the rate constants at hand, the polymer growth of Ni-MEPE is computed.

Back to basics: identification of reaction intermediates in the mechanism of a classic ligand substitution reaction on Vaska's complex

The mechanism of methylation of Vaska's complextrans-[ClIr(CO)(PPh₃)₂] by trimethylgallium was studied and the identification of the spectroscopically detected intermediates was achieved with the aid of computational methods.

Polyanionic clusters embedded in lattice-type hydrogen bonding networks involving in situ bond activation and coupling of organic cations

Grid-type hydrogen bonding networks of organic cations are used to capture pseudo-spherical Keggin-type anionic clusters.

Ligand-coupling assembly of Re(i)-thiolate complexes

Complexes 2 and 4 were synthesized under similar reaction conditions except that different ligands of HNS₂ and HNOS, respectively, were used. Two dinuclear structures of 2 and 4 with two similar in situ ligand analogues show distinct conformations, anti and syn forms, respectively.

Photophysical and electrochemical properties of Ru(II) complexes containing tridentate bisphosphino-oligothiophene ligands

Nine Ru(II) complexes containing the conjugated oligothiophene ligands 3,3''-bis(diphenylphosphino)-2,2':5',2''-terthiophene (P(2)T(3)) and 4',3'''-bis(diphenylphosphino)-3,3''''-dihexyl- 2,2':5',2'':5'',2''':5''',2''''-pentathiophene (P(2)T(5)) were prepared and characterized. P(2)T(3) and P(2)T(5) bond as tridentate ligands and three of the complexes (1, 2 and 5) form green five-coordinate Ru(II) complexes in solution. Cyclic voltammetry, variable temperature UV-vis spectroscopy and time-resolved transient absorption spectroscopy were used to characterize the electronic properties of the complexes. Increased conjugation in the complexes containing the P(2)T(5) ligand resulted in a lowering of the oxidation potential of the oligothiophene, but electropolymerization was not observed. The electronic spectra were dominated by π-π* transitions. All of the complexes were non-emissive both at room temperature and low temperature, indicating the excited state decays by other, non-radiative pathways. The transient absorption spectrum of complex 7 shows a species with a band at 475 nm and a lifetime of ∼100 ns, assigned to a ligand-based triplet state.

The first metal-organic framework containing an unprecedented in situ-generated C-substituted hexamethylenetetramine ligand

The first metal-organic framework containing an unprecedented in situ-generated C-substituted hexamethylenetetramine ligand has been successfully prepared by the reaction of silver nitrate, 4-formylbenzoic acid and hexamethylenetetramine under traditional solution conditions, which holds the unusual (3,4)-connected topological network.

Pre-catalyst resting states: a kinetic, thermodynamic and quantum mechanical analyses of [PdCl2(2-oxazoline)2] complexes

The treatment of cold ( approximately 3 degrees C) methanolic solutions of Li(2)PdCl(4) with two equivalents of 2-phenyl-2-oxazoline (Phox) results in the isolation of [PdCl(2)(Phox)(2)] (3). This complex undergoes remarkably slow isomerisation (CHCl(3)-d) at room temperature to a corresponding thermodynamic form. In addition to a theoretical treatment (DFT), the isomerisation behaviour has been analysed both kinetically and thermodynamically. These investigations lead to the conclusion that the initially formed (i.e. kinetic) isomer of 3 is the cis-form which undergoes conversion to the corresponding thermodynamic trans-form via a dissociative (D) mechanism involving loss of a Phox ligand. The activation parameters DeltaS(double dagger) and DeltaH(double dagger) are found to be +304 (+/-3) J K(-1) mol(-1) and +176 (+/-1) kJ mol(-1), respectively and indicate a high barrier to Pd-N bond cleavage under these conditions. The thermodynamic parameters show the expected endothermic nature of this process (+140 +/- 17 kJ mol(-1)) and a slight positive overall entropy (DeltaS degrees = +17 +/- 2 J K(-1) mol(-1)); this latter parameter is presumably due to the formation of the lower dipole moment trans-product when compared to the cis-isomer. Calculated (DFT) values of DeltaG(double dagger) and DeltaH(double dagger) are in excellent agreement to those found experimentally. Further theoretical investigation suggests that two 14-electron three-coordinate T-shaped transition states (i.e., [PdCl(2)(Phox)](double dagger)) are involved; the form pre-disposed to yield the thermodynamic trans-product following re-attachment of the released oxazoline is found to be energetically favoured. The analogous alkyloxazoline system [PdCl(2)(Meox)(2)] (4: Meox = 2-methyl-2-oxazoline) has likewise been investigated. This material gives no indication of cis-trans isomerisation behaviour in solution (NMR) and is shown to exist (X-ray) in the trans-form in the solid-state (as do previously reported crystalline samples of 3). A DFT study of 4 reveals similar values of DeltaS(double dagger) and DeltaH(double dagger) if a D type mechanism were operating to rapidly convert cis- to trans-4. However, a significantly higher thermodynamic stability of the trans-isomer relative to the cis-form is revealed versus similar calculations of the Phox derivative 3. This suggests the possibility that (i) reactions of Meox with Li(2)PdCl(4) may lead directly to the trans-form of [PdCl(2)(Meox)(2)] or alternatively (ii) that alkyloxazoline complexes such as 4 may have a different, and presumably much more rapid, mechanism for isomerisation. The results are placed into the context that isomerisation behaviour, or lack thereof, could play a key preliminary role in later substrate modification. This is due to the fact that [PdX(2)(oxazoline)(2)] compounds are well-known (pre-)catalysts for C-C bond forming chemistry.

Organic-Acid Effect on the Structures of a Series of Lead(II) Complexes

An investigation into the dependence of coordination polymer architectures on organic-acid ligands is reported on the basis of the reaction of Pb(NO3)2 and eight structurally related organic-acid ligands in the presence or absence of N-donor chelating ligands. Eight novel lead(II)-organic architectures, [Pb(adip)(dpdp)]2 1, [Pb(glu)(dpdp)] 2, [Pb(suc)(dpdp)] 3, [Pb(fum)(dpdp)] . H2O 4, [Pb2(oba)(dpdp)2] . 2(dpdp).2(NO3).2H2O 5, [Pb2(1,4-bdc)2(dpdp)2] . H2O 6, [Pb(dpdc)(dpdp)] 7, and [Pb(1,3-bdc)(dpdp)] . H2O 8, where dpdp = dipyrido[3,2-a:2',3'-c]-phenazine, H2adip = adipic acid, H2glu = glutaric acid, H2suc = succinic acid, H2fum = fumaric acid, H2oba = 4,4'-oxybis(benzoic acid), 1,4-H2bdc = benzene-1,4-dicarboxylic acid, H2dpdc = 2,2'-diphenyldicarboxylic acid, and 1,3-H2bdc = benzene-1,3-dicarboxylic acid, were successfully synthesized under hydrothermal conditions through varying the organic-acid linkers and structurally characterized by X-ray crystallography. Compounds 1-8 crystallize in the presence of organic-acid linkers as well as secondary N-donor chelating ligands. Diverse structures were observed for these complexes. 1 and 5 have dinuclear structures, which are further stacked via strong pi-pi interactions to form 2D layers. 2-3 and 6-8 feature chain structures, which are connected by strong pi-pi interactions to result in 2D and 3D supramolecular architectures. Compound 4 contains 2D layers, which are further extended to a 3D structure by pi-pi interactions. A systematic structural comparison of these 8 complexes indicates that the organic-acid structures have essential roles in the framework formation of the Pb(II) complexes.

Cooperative Bimetallic Reactivity: Hydrogen Activation in Two-Electron Mixed-Valence Compounds

Reversible dihydrogen uptake by a two-electron mixed-valence di-iridium complex is examined with nonlocal density-functional calculations. Optimized metrics compare favorably with crystal structures of isolated species, and the calculated activation enthalpy of acetonitrile exchange is accurate within experimental error. Dihydrogen attacks the Ir(2) core at Ir(II); the Ir(0) center is electronically saturated and of incorrect orbital parity to interact with H(2). Isomeric eta(2)-H(2) complexes have been located, and harmonic frequency calculations confirm these to be potential energy minima. A transition state links one such complex with the final dihydride; calculated atomic charges suggest a heterolytic H(2) bond scission within the di-iridium coordination sphere. This investigation also establishes a ligand-design criterion for attaining cooperative bimetallic reactivity, namely, that the supporting ligand framework has sufficient mechanical flexibility so that the target complex can accommodate the nuclear reorganizations that accompany substrate activation.