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For: Warren AJ. Eukaryotic transcription factors. Curr Opin Struct Biol 2002;12:107-14. [PMID: 11839497 DOI: 10.1016/s0959-440x(02)00296-8] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Shan F, Wu Y, Du R, Yang Q, Liu C, Wang Y, Zhang C, Chen Y. Evolutionary analysis of the OSCA gene family in sunflower (Helianthus annuus L) and expression analysis under NaCl stress. PeerJ 2023;11:e15089. [PMID: 37090105 PMCID: PMC10117387 DOI: 10.7717/peerj.15089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 02/26/2023] [Indexed: 04/25/2023]  Open
2
Zhao J, Peng M, Chen W, Xing X, Shan Y, Fan Z, Shi Y, Li H, Yang X, Li H, Chen L. Transcriptome Analysis and Functional Validation Identify a Putative bZIP Transcription Factor, Fpkapc, that Regulates Development, Stress Responses, and Virulence in Fusarium pseudograminearum. PHYTOPATHOLOGY 2022;112:1299-1309. [PMID: 35000433 DOI: 10.1094/phyto-12-21-0520-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
3
Yuan H, Guo W, Zhao L, Yu Y, Chen S, Tao L, Cheng L, Kang Q, Song X, Wu J, Yao Y, Huang W, Wu Y, Liu Y, Yang X, Wu G. Genome-wide identification and expression analysis of the WRKY transcription factor family in flax (Linum usitatissimum L.). BMC Genomics 2021;22:375. [PMID: 34022792 PMCID: PMC8141250 DOI: 10.1186/s12864-021-07697-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 05/10/2021] [Indexed: 12/19/2022]  Open
4
Li H, Lin L, Chong L, Gu S, Wen S, Yu G, Hu X, Dong L, Zhang H, Li C. Time-resolved mRNA and miRNA expression profiling reveals crucial coregulation of molecular pathways involved in epithelial-pneumococcal interactions. Immunol Cell Biol 2020;98:726-742. [PMID: 32592597 PMCID: PMC7586809 DOI: 10.1111/imcb.12371] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 05/29/2020] [Accepted: 06/23/2020] [Indexed: 12/31/2022]
5
The bZIP transcription factor FpAda1 is essential for fungal growth and conidiation in Fusarium pseudograminearum. Curr Genet 2019;66:507-515. [PMID: 31696258 PMCID: PMC7198649 DOI: 10.1007/s00294-019-01042-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2019] [Revised: 10/22/2019] [Accepted: 10/25/2019] [Indexed: 12/17/2022]
6
Liu M, Wen Y, Sun W, Ma Z, Huang L, Wu Q, Tang Z, Bu T, Li C, Chen H. Genome-wide identification, phylogeny, evolutionary expansion and expression analyses of bZIP transcription factor family in tartaty buckwheat. BMC Genomics 2019;20:483. [PMID: 31185893 PMCID: PMC6560858 DOI: 10.1186/s12864-019-5882-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Accepted: 06/04/2019] [Indexed: 12/21/2022]  Open
7
Stochasticity in transcriptional expression of a negative regulator of Arabidopsis ABA network. 3 Biotech 2019;9:15. [PMID: 30622853 DOI: 10.1007/s13205-018-1542-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 12/16/2018] [Indexed: 10/27/2022]  Open
8
Castro PH, Lilay GH, Muñoz-Mérida A, Schjoerring JK, Azevedo H, Assunção AGL. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep 2017. [PMID: 28630437 PMCID: PMC5476651 DOI: 10.1038/s41598-017-03903-6] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
9
Sun D, Sun L, Xu Q, Wang H, Yang J, Yuan Y. Promoter Polymorphism of Toll-Like Receptor 4 is Associated with a Decreased Risk of Coronary Artery Disease: A Case-Control Study in the Chinese Han Population. Med Sci Monit 2017;23:276-284. [PMID: 28092654 PMCID: PMC5266207 DOI: 10.12659/msm.899587] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
10
Hu W, Wang L, Tie W, Yan Y, Ding Z, Liu J, Li M, Peng M, Xu B, Jin Z. Genome-wide analyses of the bZIP family reveal their involvement in the development, ripening and abiotic stress response in banana. Sci Rep 2016;6:30203. [PMID: 27445085 PMCID: PMC4957152 DOI: 10.1038/srep30203] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Accepted: 06/29/2016] [Indexed: 12/26/2022]  Open
11
Zhang L, Zhang L, Xia C, Zhao G, Liu J, Jia J, Kong X. A novel wheat bZIP transcription factor, TabZIP60, confers multiple abiotic stress tolerances in transgenic Arabidopsis. PHYSIOLOGIA PLANTARUM 2015;153:538-54. [PMID: 25135325 DOI: 10.1111/ppl.12261] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2014] [Revised: 05/30/2014] [Accepted: 06/09/2014] [Indexed: 05/03/2023]
12
Dang XY, Chu WW, Shi HC, Yu SG, Han HY, Gu SH, Chen J. Genetic variants in ABCA1 promoter affect transcription activity and plasma HDL level in pigs. Gene 2014;555:414-20. [PMID: 25445391 DOI: 10.1016/j.gene.2014.11.041] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2014] [Revised: 11/11/2014] [Accepted: 11/19/2014] [Indexed: 01/03/2023]
13
Lai X, Shen S, Gao H, Yan B. Genomic organization and promoter analysis of a transcriptional repressor gene from Fenneropenaeus chinensis. Mol Biol Rep 2014;42:393-8. [PMID: 25266240 DOI: 10.1007/s11033-014-3780-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2013] [Accepted: 09/24/2014] [Indexed: 11/30/2022]
14
Baloglu MC, Eldem V, Hajyzadeh M, Unver T. Genome-wide analysis of the bZIP transcription factors in cucumber. PLoS One 2014;9:e96014. [PMID: 24760072 PMCID: PMC3997510 DOI: 10.1371/journal.pone.0096014] [Citation(s) in RCA: 126] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Accepted: 03/31/2014] [Indexed: 01/14/2023]  Open
15
Kubota T, Koiwai O, Hori K, Watanabe N, Koiwai K. TdIF1 recognizes a specific DNA sequence through its Helix-Turn-Helix and AT-hook motifs to regulate gene transcription. PLoS One 2013;8:e66710. [PMID: 23874396 PMCID: PMC3707907 DOI: 10.1371/journal.pone.0066710] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2013] [Accepted: 05/09/2013] [Indexed: 12/27/2022]  Open
16
Wang J, Zhou J, Zhang B, Vanitha J, Ramachandran S, Jiang SY. Genome-wide expansion and expression divergence of the basic leucine zipper transcription factors in higher plants with an emphasis on sorghum. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2011;53:212-31. [PMID: 21205183 DOI: 10.1111/j.1744-7909.2010.01017.x] [Citation(s) in RCA: 107] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
17
Cho S, Swaminathan CP, Bonsor DA, Kerzic MC, Guan R, Yang J, Kieke MC, Andersen PS, Kranz DM, Mariuzza RA, Sundberg EJ. Assessing energetic contributions to binding from a disordered region in a protein-protein interaction . Biochemistry 2010;49:9256-68. [PMID: 20836565 DOI: 10.1021/bi1008968] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
18
The significance of genome-wide transcriptional regulation in the evolution of stress tolerance. Evol Ecol 2010. [DOI: 10.1007/s10682-009-9345-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
19
Wetzler DE, Gallo M, Melis R, Eliseo T, Nadra AD, Ferreiro DU, Paci M, Sánchez IE, Cicero DO, de Prat Gay G. A strained DNA binding helix is conserved for site recognition, folding nucleation, and conformational modulation. Biopolymers 2009;91:432-43. [PMID: 19156829 DOI: 10.1002/bip.21146] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
20
Corrêa LGG, Riaño-Pachón DM, Schrago CG, dos Santos RV, Mueller-Roeber B, Vincentz M. The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One 2008;3:e2944. [PMID: 18698409 PMCID: PMC2492810 DOI: 10.1371/journal.pone.0002944] [Citation(s) in RCA: 205] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2008] [Accepted: 07/22/2008] [Indexed: 01/07/2023]  Open
21
Kier LD, Petrick JS. Safety assessment considerations for food and feed derived from plants with genetic modifications that modulate endogenous gene expression and pathways. Food Chem Toxicol 2008;46:2591-605. [PMID: 18602733 DOI: 10.1016/j.fct.2008.05.025] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2007] [Revised: 04/14/2008] [Accepted: 05/26/2008] [Indexed: 12/26/2022]
22
Khavinson VK, Solovyov AY, Shataeva LK. Molecular mechanism of interaction between oligopeptides and double-stranded DNA. Bull Exp Biol Med 2007;141:457-61. [PMID: 17152370 DOI: 10.1007/s10517-006-0198-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Sidhu SS, Kossiakoff AA. Exploring and designing protein function with restricted diversity. Curr Opin Chem Biol 2007;11:347-54. [PMID: 17500026 DOI: 10.1016/j.cbpa.2007.05.001] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2007] [Accepted: 05/02/2007] [Indexed: 11/22/2022]
24
Moza B, Buonpane RA, Zhu P, Herfst CA, Rahman AKMNU, McCormick JK, Kranz DM, Sundberg EJ. Long-range cooperative binding effects in a T cell receptor variable domain. Proc Natl Acad Sci U S A 2006;103:9867-72. [PMID: 16788072 PMCID: PMC1502545 DOI: 10.1073/pnas.0600220103] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
25
Minezaki Y, Homma K, Kinjo AR, Nishikawa K. Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation. J Mol Biol 2006;359:1137-49. [PMID: 16697407 DOI: 10.1016/j.jmb.2006.04.016] [Citation(s) in RCA: 193] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2006] [Revised: 04/04/2006] [Accepted: 04/05/2006] [Indexed: 12/11/2022]
26
Cho S, Swaminathan CP, Yang J, Kerzic MC, Guan R, Kieke MC, Kranz DM, Mariuzza RA, Sundberg EJ. Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction. Structure 2006;13:1775-87. [PMID: 16338406 PMCID: PMC2746401 DOI: 10.1016/j.str.2005.08.015] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2005] [Revised: 08/04/2005] [Accepted: 08/10/2005] [Indexed: 11/29/2022]
27
Pál G, Fong SY, Kossiakoff AA, Sidhu SS. Alternative views of functional protein binding epitopes obtained by combinatorial shotgun scanning mutagenesis. Protein Sci 2006;14:2405-13. [PMID: 16131663 PMCID: PMC2253482 DOI: 10.1110/ps.051519805] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
28
Pál G, Ultsch MH, Clark KP, Currell B, Kossiakoff AA, Sidhu SS. Intramolecular cooperativity in a protein binding site assessed by combinatorial shotgun scanning mutagenesis. J Mol Biol 2005;347:489-94. [PMID: 15755445 DOI: 10.1016/j.jmb.2005.01.040] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2004] [Revised: 01/10/2005] [Accepted: 01/17/2005] [Indexed: 11/17/2022]
29
Alazard R, Blaud M, Elbaz S, Vossen C, Icre G, Joseph G, Nieto L, Erard M. Identification of the 'NORE' (N-Oct-3 responsive element), a novel structural motif and composite element. Nucleic Acids Res 2005;33:1513-23. [PMID: 15767276 PMCID: PMC1065252 DOI: 10.1093/nar/gki284] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]  Open
30
Kanamori M, Konno H, Osato N, Kawai J, Hayashizaki Y, Suzuki H. A genome-wide and nonredundant mouse transcription factor database. Biochem Biophys Res Commun 2004;322:787-93. [PMID: 15336533 DOI: 10.1016/j.bbrc.2004.07.179] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2004] [Indexed: 10/26/2022]
31
Kim CH, Lim HW, Kim JR, Rott L, Hillsamer P, Butcher EC. Unique gene expression program of human germinal center T helper cells. Blood 2004;104:1952-60. [PMID: 15213097 DOI: 10.1182/blood-2004-03-1206] [Citation(s) in RCA: 201] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
32
Kim S, Zhang Z, Upchurch S, Isern N, Chen Y. Structure and DNA-binding Sites of the SWI1 AT-rich Interaction Domain (ARID) Suggest Determinants for Sequence-specific DNA Recognition. J Biol Chem 2004;279:16670-6. [PMID: 14722072 DOI: 10.1074/jbc.m312115200] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
33
Hobbs SK, Shi G, Homer R, Harsh G, Atlas SW, Bednarski MD. Magnetic resonance image-guided proteomics of human glioblastoma multiforme. J Magn Reson Imaging 2004;18:530-6. [PMID: 14579395 DOI: 10.1002/jmri.10395] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
34
Fairlie DP. Small Molecules that Mimic Components of Bioactive Protein Surfaces. Aust J Chem 2004. [DOI: 10.1071/ch04074] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
35
Giraldo R. Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives. FEMS Microbiol Rev 2003;26:533-54. [PMID: 12586394 DOI: 10.1111/j.1574-6976.2003.tb00629.x] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
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