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Godase VP, Kumar VR, Kumar AR. Potential of Y. lipolytica epoxide hydrolase for efficient production of enantiopure (R)-1,2-octanediol. AMB Express 2023; 13:77. [PMID: 37495892 PMCID: PMC10371975 DOI: 10.1186/s13568-023-01584-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 07/11/2023] [Indexed: 07/28/2023] Open
Abstract
The recombinant Yleh from a tropical marine yeast Yarrowia lipolytica NCIM 3589 exhibited a high epoxide hydrolase activity of 9.34 ± 1.80 µmol min-1 mg-1 protein towards 1,2-epoxyoctane (EO), at pH 8.0 and 30 °C. The reaction product was identified as 1,2-Octanediol (OD) by GC-MS using EO and H2O18 as substrate, affirming the functionality of Yleh as an epoxide hydrolase. For EO, the Km, Vmax, and kcat/Km values were 0.43 ± 0.017 mM, 0.042 ± 0.003 mM min-1, and 467.17 ± 39.43 mM-1 min-1, respectively. To optimize the reaction conditions for conversion of racemic EO by Yleh catalyst to enantiopure (R)-1,2-octanediol, initially, Response Surface Methodology was employed. Under optimized reaction conditions of 15 mM EO, 150 µg purified Yleh at 30 °C a maximal diol production of 7.11 mM was attained in a short span of 65 min with a yield of 47.4%. Green technology using deep eutectic solvents for the hydrophobic substrate (EO) were tested as co-solvents in Yleh catalyzed EO hydrolysis. Choline chloride-Glycerol, produced 9.08 mM OD with an increased OD yield of 60.5%. Thus, results showed that deep eutectic solvents could be a promising solvent for Yleh-catalyzed reactions making Yleh a potential biocatalyst for the biosynthesis of enantiopure synthons.
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Affiliation(s)
- Vijaya P Godase
- Biochemistry Research Laboratory, Department of Biotechnology (Formerly Institute of Bioinformatics and Biotechnology), Savitribai Phule Pune University, 411007, Pune, India
- Department of Biochemistry, Shivaji University, 416004, Kolhapur, India
| | - V Ravi Kumar
- Chemical Engineering and Process Development Division, National Chemical Laboratory, 411008, Pune, India
| | - Ameeta Ravi Kumar
- Biochemistry Research Laboratory, Department of Biotechnology (Formerly Institute of Bioinformatics and Biotechnology), Savitribai Phule Pune University, 411007, Pune, India.
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Zhang ZJ, Pan J, Ma BD, Xu JH. Efficient Biocatalytic Synthesis of Chiral Chemicals. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2014; 155:55-106. [DOI: 10.1007/10_2014_291] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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Beloti LL, Costa BZ, Toledo MA, Santos CA, Crucello A, Fávaro MT, Santiago AS, Mendes JS, Marsaioli AJ, Souza AP. A novel and enantioselective epoxide hydrolase from Aspergillus brasiliensis CCT 1435: Purification and characterization. Protein Expr Purif 2013; 91:175-83. [DOI: 10.1016/j.pep.2013.08.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Revised: 07/21/2013] [Accepted: 08/03/2013] [Indexed: 10/26/2022]
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Duarah A, Goswami A, Bora TC, Talukdar M, Gogoi BK. Enantioconvergent Biohydrolysis of Racemic Styrene Oxide to R-phenyl-1, 2-ethanediol by a Newly Isolated Filamentous Fungus Aspergillus tubingensis TF1. Appl Biochem Biotechnol 2013; 170:1965-73. [DOI: 10.1007/s12010-013-0324-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2013] [Accepted: 06/09/2013] [Indexed: 11/29/2022]
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Yildirim D, Tükel SS, Alptekin Ö, Alagöz D. Immobilized Aspergillus niger epoxide hydrolases: Cost-effective biocatalysts for the prepation of enantiopure styrene oxide, propylene oxide and epichlorohydrin. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2012.11.015] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Bala N, Kaur K, Chimni SS, Saini HS, Kanwar SS. Bioresolution of benzyl glycidyl ether using whole cells of Bacillus alcalophilus. J Basic Microbiol 2011; 52:383-9. [PMID: 22052437 DOI: 10.1002/jobm.201100204] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2011] [Accepted: 07/25/2011] [Indexed: 11/11/2022]
Abstract
The incubation of whole Bacillus alcalophilus cells grown on a mineral supplemented medium (MSM) containing 1% (w/v) sucrose as carbon source, 1.2% (w/v) tryptone as nitrogen source at pH 6.5 and temperature 30 °C in 24 h kinetically resolved benzyl glycidyl ether (1 mg/ml) to provide (S)-benzyl glycidyl ether with 30% ee and (R)-3-benzyloxypropane-1,2-diol with 40% ee.
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Affiliation(s)
- Neeraj Bala
- Department of Chemistry, Guru Nanak Dev University, Amritsar, India
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Lin H, Liu JY, Wang HB, Ahmed AAQ, Wu ZL. Biocatalysis as an alternative for the production of chiral epoxides: A comparative review. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.molcatb.2011.07.012] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Bala N, Chimni SS. Recent developments in the asymmetric hydrolytic ring opening of epoxides catalysed by microbial epoxide hydrolase. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.tetasy.2010.11.013] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Enantioconvergent bioconversion of p-chlorostyrene oxide to (R)-p-chlorophenyl-1,2-ethandiol by the bacterial epoxide hydrolase of Caulobacter crescentus. Biotechnol Lett 2008; 30:1219-25. [DOI: 10.1007/s10529-008-9668-7] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2008] [Revised: 01/25/2008] [Accepted: 01/28/2008] [Indexed: 10/22/2022]
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Bisogno FR, Orden AA, Pranzoni CA, Cifuente DA, Giordano OS, Kurina Sanz M. Atypical regioselective biohydrolysis on steroidal oxiranes by Aspergillus niger whole cells: some stereochemical features. Steroids 2007; 72:643-52. [PMID: 17572462 DOI: 10.1016/j.steroids.2007.04.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/14/2006] [Revised: 04/20/2007] [Accepted: 04/26/2007] [Indexed: 11/30/2022]
Abstract
5,6-Epoxycholestan-3beta-ol derivatives were hydrolyzed in a diastereoconvergent manner by growing and resting cells of several strains of Aspergillus niger, particularly A. niger ATCC 11394. These strains displayed opposite regioselectivity toward each isomer in an alpha and beta epoxide mixture, thus, the nucleophilic attack took place at the less substituted and the most substituted carbon atom on each diasteromer, respectively. These biocatalysts opened trisubstituted oxiranes but were unable to hydrolyze the disubstituted oxiranes in the tested sterol derivatives. These findings suggest that A. niger strains possess another hydrolytic ability different from the commercial A. niger epoxide hydrolase (EH) that did not accept this kind of steroidal oxiranes as substrates.
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Affiliation(s)
- Fabricio R Bisogno
- INTEQUI-CONICET, Area de Química Orgánica, Facultad de Química, Bioquímica y Farmacia, UNSL, Chacabuco y Pedernera, 5700 San Luis, Argentina
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Lee EY, Shuler ML. Molecular engineering of epoxide hydrolase and its application to asymmetric and enantioconvergent hydrolysis. Biotechnol Bioeng 2007; 98:318-27. [PMID: 17405175 DOI: 10.1002/bit.21444] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Safety and regulatory issues favor increasing use of enantiopure compounds in pharmaceuticals. Enantiopure epoxides and diols are valuable intermediates in organic synthesis for the production of optically active pharmaceuticals. Enantiopure epoxide can be prepared using epoxide hydrolase (EH)-catalyzed asymmetric hydrolysis of its racemate. Enantioconvergent hydrolysis of racemic epoxides by EHs possessing complementary enantioselectivity and regioselectivity can lead to the formation of enantiopure vicinal diols with high yield. EHs are cofactor-independent and easy-to-use catalysts. EHs will attract much attention as commercial biocatalysts for the preparation of enantiopure epoxides and diols. In this paper, recent progress in molecular engineering of EHs is reviewed. Some examples and prospects of asymmetric and enantioconvergent hydrolysis reactions are discussed as supplements to molecular engineering to improve EH performance.
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Affiliation(s)
- Eun Yeol Lee
- Department of Food Science and Biotechnology, Kyungsung University, Daeyeon-dong, Nam-gu, Busan 608-736, Republic of Korea.
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Cloning and characterization of a fish microsomal epoxide hydrolase of Danio rerio and application to kinetic resolution of racemic styrene oxide. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/j.molcatb.2005.09.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Arand M, Cronin A, Adamska M, Oesch F. Epoxide Hydrolases: Structure, Function, Mechanism, and Assay. Methods Enzymol 2005; 400:569-88. [PMID: 16399371 DOI: 10.1016/s0076-6879(05)00032-7] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Epoxide hydrolases are a class of enzymes important in the detoxification of genotoxic compounds, as well as in the control of physiological signaling molecules. This chapter gives an overview on the function, structure, and enzymatic mechanism of structurally characterized epoxide hydrolases and describes selected assays for the quantification of epoxide hydrolase activity.
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Affiliation(s)
- Michael Arand
- Institut fuer Pharmakologie und Toxikologie, Universitaet Wuerzburg, Germany
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Santos A, Pereira N, da Silva I, Sarquis M, Antunes O. Peroxidase catalyzed microbiological oxidation of isosafrol into piperonal. Process Biochem 2004. [DOI: 10.1016/j.procbio.2003.11.019] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Xu Y, Xu JH, Pan J, Zhao L, Zhang SL. Biocatalytic resolution of nitro-substituted phenoxypropylene oxides with Trichosporon loubierii epoxide hydrolase and prediction of their enantiopurity variation with reaction time. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.molcatb.2003.11.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Abstract
Epoxide hydrolases are useful catalysts for the hydrolytic kinetic resolution of epoxides, which are sought after intermediates for the synthesis of enantiopure fine chemicals. The epoxide hydrolases from Aspergillus niger and from the basidiomycetous yeasts Rhodotorula glutinis and Rhodosporidium toruloides have demonstrated potential as versatile, user friendly biocatalysts for organic synthesis. A recombinant A. niger epoxide hydrolase, produced by an overproducing A. niger strain, is already commercially available and recombinant yeast epoxide hydrolases expressed in Escherichia coli have shown excellent results. Within the vast body of activity information on the one hand and gene sequence information on the other hand, the epoxide hydrolases from the Rhodotorula spp. and A. niger stand out because we have sequence information as well as activity information for both the wild-type and recombinant forms of these enzymes.
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Affiliation(s)
- Martha S Smit
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein, 9300, South Africa.
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Abstract
Epoxides are attractive intermediates for producing chiral compounds. Important biocatalytic reactions involving epoxides include epoxide hydrolase mediated kinetic resolution, leading to the formation of diols and enantiopure remaining substrates, and enantioconvergent enzymatic hydrolysis, which gives high yields of a single enantiomer from racemic mixtures. Epoxides can also be converted by non-hydrolytic enantioselective ring opening, using alternative anionic nucleophiles; these reactions can be catalysed by haloalcohol dehalogenases. The differences in scope of these enzymatic conversions is related to their different catalytic mechanisms, which involve, respectively, covalent catalysis with an aspartate carboxylate as the nucleophile and non-covalent catalysis with a tyrosine that acts as a general acid-base. The emerging new possibilities for enantioselective biocatalytic conversion of epoxides suggests that their importance in green chemistry will grow.
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Affiliation(s)
- Erik J de Vries
- Department of Biochemistry, Groningen Biomolecular Sciences & Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
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Davis BG. 2 Synthetic methods : Part (iii) Biocatalysis and enzymes in organic synthesis. ACTA ACUST UNITED AC 2003. [DOI: 10.1039/b211999b] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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