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Qonaah IA, Simon AL, Warner D, Rostron RM, Bruce TJA, Ray RV. Rapid screening for resistance to Sitobion avenae (F.) and Rhopalosiphum padi (L.) in winter wheat seedlings and selection of efficient assessment methods. PEST MANAGEMENT SCIENCE 2024. [PMID: 39425459 DOI: 10.1002/ps.8485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Revised: 09/09/2024] [Accepted: 10/01/2024] [Indexed: 10/21/2024]
Abstract
BACKGROUND Sitobion avenae (F.) and Rhopalosiphum padi (L.) are harmful pests of wheat [Triticum aestivum (L.)]. No genetic resistance against the aphids has been identified in commercial wheat varieties and resistance phenotyping can be time-consuming and laborious. Here, we tested a high-throughput phenotyping method to screen 29 commercial winter wheat varieties for alate antixenosis and antibiosis. We validated this method using comprehensive behavioural analyses, including alate attraction to volatile organic compounds (VOCs) and a feeding bioassay using an electrical penetration graph (EPG), subsequently highlighting possible sources of resistance. RESULTS We observed differences in alate behaviour upon assessing alate settlement on wheat seedlings and attraction towards VOCs, revealing the importance of visual and early post-alighting cues for alate host selection. Aphid settlement was four times higher on the most preferred variety than on the least preferred variety. Using an EPG bioassay, we identified phloem feeding and stylet derailment parameters linked to resistance. We found antibiosis assessment on detached leaves to be an inadequate screen because it produced results inconsistent with intact leaves assessment. Alate and nymph mortality were identified as key traits signifying antibiosis, showing significant positive relationships with alate reproduction and nymph mean relative growth rate. CONCLUSIONS Overall, antixenosis and antibiosis varietal responses were consistent for both aphid species. Alate settlement on wheat seedlings was a more efficient antixenosis screen than an olfactometer assay using VOCs. In addition to assessing alate and nymph survival for antibiosis, this allows for more rapid phenotyping of large numbers of genotypes to identify novel aphid resistance genes for varietal improvement. © 2024 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Ilma A Qonaah
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, UK
| | - Amma L Simon
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, UK
| | | | - Rosanna M Rostron
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, UK
| | | | - Rumiana V Ray
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, UK
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Garzo E, Álvarez AJ, Moreno A, Walker GP, Tjallingii WF, Fereres A. Novel program for automatic calculation of EPG variables. JOURNAL OF INSECT SCIENCE (ONLINE) 2024; 24:28. [PMID: 38942050 PMCID: PMC11212364 DOI: 10.1093/jisesa/ieae063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 05/10/2024] [Accepted: 05/29/2024] [Indexed: 06/30/2024]
Abstract
The electrical penetration graph (EPG) technique is the most powerful tool for studying the feeding behavior of pierce-sucking insects. However, calculating EPG variables is often very time-consuming, and consequently, several software programs have been developed for the automatic calculation of EPG variables. Here we present a new user-friendly Excel Workbook that uses a standardized list of EPG variables and follows expert guidelines for calculating them. The program developed in Visual Basic for Applications (VBA) is a step up from the existing software and allows easy data analysis and interpretation. It also includes a novel option for dealing with the common problem of "truncated"-waveforms artificially terminated by the end of recording. The only requirement to run the program is Microsoft Excel software running under a PC environment. The Workbook was validated by calculating variables from EPG recordings of aphids and psyllids and the results obtained were compared with those of existing software such as the Sarria Workbook. Our EPG Workbook provides researchers with a reliable and standardized tool for the automatic calculation of up to 127 EPG variables from phloem-sap-sucking insects.
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Affiliation(s)
- Elisa Garzo
- Departamento de Protección de Cultivos, Instituto de Ciencias Agrarias, CSIC, Madrid, Spain
| | | | - Aránzazu Moreno
- Departamento de Protección de Cultivos, Instituto de Ciencias Agrarias, CSIC, Madrid, Spain
| | - Gregory P Walker
- Department of Entomology, University of California, Riverside, CA 92521, USA
| | | | - Alberto Fereres
- Departamento de Protección de Cultivos, Instituto de Ciencias Agrarias, CSIC, Madrid, Spain
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Burger NFV, Nicolis VF, Botha AM. Host-specific co-evolution likely driven by diet in Buchnera aphidicola. BMC Genomics 2024; 25:153. [PMID: 38326788 PMCID: PMC10851558 DOI: 10.1186/s12864-024-10045-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Accepted: 01/24/2024] [Indexed: 02/09/2024] Open
Abstract
BACKGROUND Russian wheat aphid (Diuraphis noxia Kurd.) is a severe pest to wheat, and even though resistance varieties are available to curb this pest, they are becoming obsolete with the development of new virulent aphid populations. Unlike many other aphids, D noxia only harbours a single endosymbiont, Buchnera aphidicola. Considering the importance of Buchnera, this study aimed to elucidate commonalities and dissimilarities between various hosts, to better understand its distinctiveness within its symbiotic relationship with D. noxia. To do so, the genome of the D. noxia's Buchnera was assembled and compared to those of other aphid species that feed on diverse host species. RESULTS The overall importance of several features such as gene length and percentage GC content was found to be critical for the maintenance of Buchnera genes when compared to their closest free-living relative, Escherichia coli. Buchnera protein coding genes were found to have percentage GC contents that tended towards a mean of ~ 26% which had strong correlation to their identity to their E. coli homologs. Several SNPs were identified between different aphid populations and multiple isolates of Buchnera were confirmed in single aphids. CONCLUSIONS Establishing the strong correlation of percentage GC content of protein coding genes and gene identity will allow for identifying which genes will be lost in the continually shrinking Buchnera genome. This is also the first report of a parthenogenically reproducing aphid that hosts multiple Buchnera strains in a single aphid, raising questions regarding the benefits of maintaining multiple strains. We also found preliminary evidence for post-transcriptional regulation of Buchnera genes in the form of polyadenylation.
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Affiliation(s)
- N Francois V Burger
- Department of Genetics, University of Stellenbosch, Stellenbosch, 7601, South Africa
| | - Vittorio F Nicolis
- Department of Genetics, University of Stellenbosch, Stellenbosch, 7601, South Africa
| | - Anna-Maria Botha
- Department of Genetics, University of Stellenbosch, Stellenbosch, 7601, South Africa.
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Zhu Y, Stahl A, Rostás M, Will T. Temporal and species-specific resistance of sugar beet to green peach aphid and black bean aphid: mechanisms and implications for breeding. PEST MANAGEMENT SCIENCE 2024; 80:404-413. [PMID: 37708325 DOI: 10.1002/ps.7770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/21/2023] [Accepted: 09/14/2023] [Indexed: 09/16/2023]
Abstract
BACKGROUND Sugar beet (Beta vulgaris ssp. vulgaris), a key crop for sugar production, faces significant yield losses caused by the black bean aphid Aphis fabae (Scop.) and the green peach aphid Myzus persicae (Sulzer), which also transmits viruses. The restriction on neonicotinoid usage in Europe has intensified this problem, emphasizing the urgent need for breeding resistant crop varieties. This study evaluated 26 sugar beet germplasms for resistance against both aphid species by using performance and feeding behavior assays. Additionally, whole plant bioassays and semi-field experiments were carried out with Myzus persicae. RESULTS Our findings demonstrate the presence of temporal resistance against both aphid species in the primary sugar beet gene pool. Beet yellows virus (BYV) carrying aphids showed enhanced performance. Different levels of plant defense mechanisms were involved including resistance against Myzus persicae before reaching the phloem, particularly in sugar beet line G3. In contrast, resistance against Aphis fabae turned out to be predominately phloem-located. Furthermore, a high incidence of black inclusion bodies inside the stomach of Myzus persicae was observed for approximately 85% of the plant genotypes tested, indicating a general and strong incompatibility between sugar beet and Myzus persicae in an initial phase of interaction. CONCLUSION Sugar beet resistance against aphids involved different mechanisms and is species-specific. The identification of these mechanisms and interactions represents a crucial milestone in advancing the breeding of sugar beet varieties with improved resistance. © 2023 Julius Kühn-Institut and The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Yunsheng Zhu
- Julius Kühn Institute (JKI) - Federal Research Center for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Quedlinburg, Germany
| | - Andreas Stahl
- Julius Kühn Institute (JKI) - Federal Research Center for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Quedlinburg, Germany
| | - Michael Rostás
- Agricultural Entomology, Department of Crop Sciences, University of Göttingen, Göttingen, Germany
| | - Torsten Will
- Julius Kühn Institute (JKI) - Federal Research Center for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Quedlinburg, Germany
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Shih PY, Sugio A, Simon JC. Molecular Mechanisms Underlying Host Plant Specificity in Aphids. ANNUAL REVIEW OF ENTOMOLOGY 2023; 68:431-450. [PMID: 36228134 DOI: 10.1146/annurev-ento-120220-020526] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Aphids are serious pests of agricultural and ornamental plants and important model systems for hemipteran-plant interactions. The long evolutionary history of aphids with their host plants has resulted in a variety of systems that provide insight into the different adaptation strategies of aphids to plants and vice versa. In the past, various plant-aphid interactions have been documented, but lack of functional tools has limited molecular studies on the mechanisms of plant-aphid interactions. Recent technological advances have begun to reveal plant-aphid interactions at the molecular level and to increase our knowledge of the mechanisms of aphid adaptation or specialization to different host plants. In this article, we compile and analyze available information on plant-aphid interactions, discuss the limitations of current knowledge, and argue for new research directions. We advocate for more work that takes advantage of natural systems and recently established molecular techniques to obtain a comprehensive view of plant-aphid interaction mechanisms.
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Affiliation(s)
- Po-Yuan Shih
- INRAE (National Institute of Agriculture, Food and Environment), UMR IGEPP, Le Rheu, France; , ,
| | - Akiko Sugio
- INRAE (National Institute of Agriculture, Food and Environment), UMR IGEPP, Le Rheu, France; , ,
| | - Jean-Christophe Simon
- INRAE (National Institute of Agriculture, Food and Environment), UMR IGEPP, Le Rheu, France; , ,
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Antifeedant Potential of Geranylacetone and Nerylacetone and Their Epoxy-Derivatives against Myzus persicae (Sulz.). MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27248871. [PMID: 36558003 PMCID: PMC9784399 DOI: 10.3390/molecules27248871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/08/2022] [Accepted: 12/09/2022] [Indexed: 12/15/2022]
Abstract
Geranylacetone and nerylacetone are natural sesquiterpenoids, which play various roles in plant-insect interactions, including the deterrent and repellent effects on herbivores. The structural modifications of natural compounds often change their biological activities. The aim of the study was to evaluate the effect of geranylacetone, nerylacetone and their epoxy-derivatives on the probing and settling behavior of Myzus persicae (Sulz.) (Hemiptera: Aphididae). The no-choice test using the Electrical Penetration Graph (EPG) technique showed that the probes before the first phloem phase were usually shorter than 3 min, which means that they were terminated within the epidermis and/or outer layers of mesophyll. This resulted in a tendency to delay the initiation of the phloem phase in aphids, which reflects a weak preingestive deterrent activity of the studied compounds at the level of non-vascular tissues. Most M. persicae showed bouts of sustained phloem sap ingestion. However, the 24-h free-choice test demonstrated that aphids did not settle on the leaves treated with geranylacetone, nerylacetone, and their epoxy-derivatives. The refusal to settle after the consumption of phloem sap on treated plants indicated that the studied compounds had postingestive deterrent activity. The epoxidation of geranylacetone and nerylacetone did not evoke significant changes in their activity profiles.
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Leybourne DJ, Aradottir GI. Common resistance mechanisms are deployed by plants against sap-feeding herbivorous insects: insights from a meta-analysis and systematic review. Sci Rep 2022; 12:17836. [PMID: 36284143 PMCID: PMC9596439 DOI: 10.1038/s41598-022-20741-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 09/19/2022] [Indexed: 01/20/2023] Open
Abstract
Despite their abundance and economic importance, the mechanism of plant resistance to sap-feeding insects remains poorly understood. Here we deploy meta-analysis and data synthesis methods to evaluate the results from electrophysiological studies describing feeding behaviour experiments where resistance mechanisms were identified, focussing on studies describing host-plant resistance and non-host resistance mechanisms. Data were extracted from 108 studies, comprising 41 insect species across eight insect taxa and 12 host-plant families representing over 30 species. Results demonstrate that mechanisms deployed by resistant plants have common consequences on the feeding behaviour of diverse insect groups. We show that insects feeding on resistant plants take longer to establish a feeding site and have their feeding duration suppressed two-fold compared with insects feeding on susceptible plants. Our results reveal that traits contributing towards resistant phenotypes are conserved across plant families, deployed against taxonomically diverse insect groups, and that the underlying resistance mechanisms are conserved. These findings provide a new insight into plant-insect interaction and highlight the need for further mechanistic studies across diverse taxa.
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Affiliation(s)
- D. J. Leybourne
- grid.9122.80000 0001 2163 2777Zoological Biodiversity, Institute of Geobotany, Leibniz University of Hannover, 30167 Hannover, Germany
| | - G. I. Aradottir
- grid.17595.3f0000 0004 0383 6532Department of Plant Pathology and Entomology, NIAB, Cambridge, CB3 0LE UK
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Aphid Resistance in Pisum Affects the Feeding Behavior of Pea-Adapted and Non-Pea-Adapted Biotypes of Acyrthosiphon pisum Differently. INSECTS 2022; 13:insects13030268. [PMID: 35323566 PMCID: PMC8955652 DOI: 10.3390/insects13030268] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 02/22/2022] [Accepted: 03/04/2022] [Indexed: 02/01/2023]
Abstract
Simple Summary Resistance of a Pisum fulvum and five Pisum sativum genotypes to Acyrthosiphon pisum pea and alfalfa-adapted biotypes was evaluated by measuring aphid body mass, confirming the variable resistance level of these genotypes. The feeding behavior of the aphids on the Pisum genotypes was then examined by electropenetrography (EPG). The EPG results suggested that the resistance of Pisum genotypes to non-adapted A. pisum resides in mesophyll and phloem tissues while the resistance variation of P. sativum to pea adapted aphids may be influenced by the quality of phloem sap. Abstract Resistant genotypes of crops have emerged as an alternative and sustainable solution to pesticide use against pest insects. The resistance depends on the genetic diversity of the host plant and the pest species and can cause an alteration of the insect behavior. The aim of this work was to characterize the resistance level of different Pisum genotypes (one P. fulvum and five P. sativum genotypes) to two biotypes of the aphid Acyrthosiphon pisum, respectively adapted to pea and alfalfa, by measuring the individual aphid weight and analyzing aphid feeding behavior by electropenetrography (EPG). Aphid body mass was influenced by Pisum genotypes reflecting variation in their resistance level. P. fulvum was the most resistant to the A. pisum pea biotype (ArPo28 clone) and showed intermediate resistance to the A. pisum alfalfa biotype (LSR1 clone). The resistance levels of the five P. sativum genotypes to the two aphid biotypes were variable and more pronounced for the alfalfa biotype. EPG data showed that ArPo28 on P. fulvum and LSR1 on all the Pisum genotypes spent shorter time phloem feeding compared to ArPo28 on P. sativum genotypes, indicating that the resistance of Pisum genotypes to non-adapted A. pisum resides in mesophyll and phloem cells. In the meantime, ArPo28 on P. sativum genotypes with a different level of resistance spent a similar length of time phloem feeding, indicating that the quality of phloem sap of the resistance genotypes may not be optimal for the aphid. The study indicated that the resistance of Pisum genotypes to the two A. pisum biotypes involves different genetic factors and mechanisms that affect the aphid differently.
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Host Acceptance and Plant Resistance: A Comparative Behavioral Study of Myzus persicae and Acyrthosiphon pisum. INSECTS 2021; 12:insects12110975. [PMID: 34821776 PMCID: PMC8622697 DOI: 10.3390/insects12110975] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 10/24/2021] [Accepted: 10/26/2021] [Indexed: 11/24/2022]
Abstract
Simple Summary Aphids are one of the most destructive insect pests worldwide. The green peach aphid (Myzus persicae) feeds on a broad range of plants, whereas the pea aphid (Acyrthosiphon pisum) only feeds on legumes. In this study, these two aphid species were used to investigate host acceptance and plant resistance to aphid feeding. Experiments on host plant preference and aphid performance (with regard to survival, development, and fecundity) confirmed that rape (Brassica rapa) is a suitable host and that faba bean (Vicia faba) is a poor host for the green peach aphid; for the pea aphid, faba bean is a suitable host, whereas rape is a nonhost. The probing and feeding behavior of these two aphid species on rape and faba bean was examined, and the results demonstrated the feeding preferences of these two aphid species. The green peach aphid had difficulty ingesting the phloem sap of faba bean. For the nonhost, the pea aphid spent relatively little time on mesophyll probing and did not achieve phloem sap ingestion. Furthermore, the effects of the probing and feeding behavior of specialist and generalist aphids on the spread of plant diseases caused by viruses were discussed. Abstract Aphids are prominent phloem-feeding insect pests. Myzus persicae and Acyrthosiphon pisum are generalist and specialist species, respectively. In this study, these two aphid species were used to investigate host acceptance and plant resistance to aphid feeding. M.persicae survived and reproduced on rape (Brassica rapa), but few individuals (9%) survived on faba bean (Vicia faba). A.pisum survived and reproduced on faba bean, but no A.pisum survived on rape. The probing and feeding behavior of M. persicae and A. pisum on rape and faba bean was examined using an electrical penetration graph (EPG) technique. The results demonstrated the feeding preferences of these two aphid species. The EPG results suggest that the resistance of faba bean to M. persicae and that of rape to A. pisum are likely residing in the phloem and mesophyll tissues, respectively. Due to the distinct probing and feeding behaviors, specialist and generalist aphids would have different impacts on the epidemiology of plant viral diseases. The findings can be applied to the management of viral diseases transmitted by specialist or generalist aphids in crop production.
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Different Host Plants Distinctly Influence the Feeding Ability of the Brown Citrus Aphid Toxoptera citricida. INSECTS 2021; 12:insects12100864. [PMID: 34680633 PMCID: PMC8538693 DOI: 10.3390/insects12100864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 09/13/2021] [Accepted: 09/17/2021] [Indexed: 12/04/2022]
Abstract
Simple Summary The brown citrus aphid, Toxoptera citricida, is an important pest of citrus and causes serious damage in the main production areas. Host plant resistance is an environmentally friendly method to manage aphid infestations and is becoming increasingly important as aphids develop greater resistance to insecticides. The aim of this study was to assess T. citricida resistance on seven widespread and common hosts using electropenetrography combined with a population development test. We showed that the feeding parameters of the brown citrus aphid differed significantly depending on the host plants. Toxoptera citricida spent more time in the pathway stage and less time in the phloem stage on Eureka, while the opposite was observed on Yuzu and Rough Lemon. Measurements of population development of aphids showed that on the Eureka, aphids developed more slowly. Our data suggest that different host plants distinctly influence the ability of T. citricida to feed. The brown citrus aphid did not prefer to feed on Eureka Lemon compared to the other six host plants. Abstract Piercing–sucking insects are important crop pests, and an understanding of their feeding behavior and population development plays a crucial role in studying insect population dynamics and crop resistance. In our study, we examined the probing behavior of the brown citrus aphid, Toxoptera citricida, using electropenetrography and assessed its population development after 8 days on seven host plants: Yuzu, Citrus junos Sieb. ex Tanaka; Rough Lemon, C. jambhiri Lush.; ‘Luofu’ kumquat, Fortunella margarita Swingle; ‘Olinda’ valencia orange, C. sinensis (L.) Osbeck; ‘Yanxiwanlu’ Ponkan, C. reticulata Blanco; ‘Rohde Red’ valencia orange, C. sinensis; and ‘Eureka’ lemon, C. limon (L.) Osbeck. The results demonstrated that probing by the brown citrus aphid differed significantly according to the target hosts. Toxoptera citricida produced significantly more pathway activities on Eureka than on Rough Lemon and Yuzu. Toxoptera citricida spent more time from the first probe to first salivation into phloem sieve elements on Eureka compared to Yuzu. In addition, the total duration of ingestion from sieve cells of each aphid in the phloem-feeding phase was shortest on Eureka, and this was significantly shorter than that on Yuzu, Rough Lemon, Luofu, and Olinda. The population number of T. citricida on Eureka after 8 days was significantly lower than that on the other hosts. Overall, Eureka was found to have obvious resistance to T. citricida, whereas Yuzu and Rough Lemon were susceptible host plants. These results provide a theoretical basis for exploring aphid-resistant fruit tree resources using resistant varieties.
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Serba DD, Meng X, Schnable J, Bashir E, Michaud JP, Vara Prasad PV, Perumal R. Comparative Transcriptome Analysis Reveals Genetic Mechanisms of Sugarcane Aphid Resistance in Grain Sorghum. Int J Mol Sci 2021; 22:ijms22137129. [PMID: 34281180 PMCID: PMC8268927 DOI: 10.3390/ijms22137129] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 06/25/2021] [Accepted: 06/26/2021] [Indexed: 02/04/2023] Open
Abstract
The sugarcane aphid, Melanaphis sacchari (Zehntner) (Hemiptera: Aphididae) (SCA), has become a major pest of grain sorghum since its appearance in the USA. Several grain sorghum parental lines are moderately resistant to the SCA. However, the molecular and genetic mechanisms underlying this resistance are poorly understood, which has constrained breeding for improved resistance. RNA-Seq was used to conduct transcriptomics analysis on a moderately resistant genotype (TAM428) and a susceptible genotype (Tx2737) to elucidate the molecular mechanisms underlying resistance. Differential expression analysis revealed differences in transcriptomic profile between the two genotypes at multiple time points after infestation by SCA. Six gene clusters had differential expression during SCA infestation. Gene ontology enrichment and cluster analysis of genes differentially expressed after SCA infestation revealed consistent upregulation of genes controlling protein and lipid binding, cellular catabolic processes, transcription initiation, and autophagy in the resistant genotype. Genes regulating responses to external stimuli and stress, cell communication, and transferase activities, were all upregulated in later stages of infestation. On the other hand, expression of genes controlling cell cycle and nuclear division were reduced after SCA infestation in the resistant genotype. These results indicate that different classes of genes, including stress response genes and transcription factors, are responsible for countering the physiological effects of SCA infestation in resistant sorghum plants.
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Affiliation(s)
- Desalegn D. Serba
- United States Department of Agriculture—Agricultural Research Service, U.S. Arid Land Agricultural Research Center, Maricopa, AZ 85138, USA;
| | - Xiaoxi Meng
- Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE 68588, USA; (X.M.); (J.S.)
| | - James Schnable
- Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE 68588, USA; (X.M.); (J.S.)
| | - Elfadil Bashir
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA; (E.B.); (P.V.V.P.)
| | - J. P. Michaud
- Department of Entomology, Kansas State University, Hays, KS 67601, USA;
- Agricultural Research Center, Hays, KS 67601, USA
| | - P. V. Vara Prasad
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA; (E.B.); (P.V.V.P.)
| | - Ramasamy Perumal
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA; (E.B.); (P.V.V.P.)
- Agricultural Research Center, Hays, KS 67601, USA
- Correspondence:
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