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De Vivo M, Chen WY, Huang JP. Testing the efficacy of different molecular tools for parasite conservation genetics: a case study using horsehair worms (Phylum: Nematomorpha). Parasitology 2023; 150:842-851. [PMID: 37415562 PMCID: PMC10478060 DOI: 10.1017/s0031182023000641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 06/26/2023] [Accepted: 06/27/2023] [Indexed: 07/08/2023]
Abstract
In recent years, parasite conservation has become a globally significant issue. Because of this, there is a need for standardized methods for inferring population status and possible cryptic diversity. However, given the lack of molecular data for some groups, it is challenging to establish procedures for genetic diversity estimation. Therefore, universal tools, such as double-digest restriction-site-associated DNA sequencing (ddRADseq), could be useful when conducting conservation genetic studies on rarely studied parasites. Here, we generated a ddRADseq dataset that includes all 3 described Taiwanese horsehair worms (Phylum: Nematomorpha), possibly one of the most understudied animal groups. Additionally, we produced data for a fragment of the cytochrome c oxidase subunit I (COXI) for the said species. We used the COXI dataset in combination with previously published sequences of the same locus for inferring the effective population size (Ne) trends and possible population genetic structure.We found that a larger and geographically broader sample size combined with more sequenced loci resulted in a better estimation of changes in Ne. We were able to detect demographic changes associated with Pleistocene events in all the species. Furthermore, the ddRADseq dataset for Chordodes formosanus did not reveal a genetic structure based on geography, implying a great dispersal ability, possibly due to its hosts. We showed that different molecular tools can be used to reveal genetic structure and demographic history at different historical times and geographical scales, which can help with conservation genetic studies in rarely studied parasites.
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Affiliation(s)
- Mattia De Vivo
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Wei-Yun Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Jen-Pan Huang
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
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Nikolaeva OV, Beregova AM, Efeykin BD, Miroliubova TS, Zhuravlev AY, Ivantsov AY, Mikhailov KV, Spiridonov SE, Aleoshin VV. Expression of Hairpin-Enriched Mitochondrial DNA in Two Hairworm Species (Nematomorpha). Int J Mol Sci 2023; 24:11411. [PMID: 37511167 PMCID: PMC10380579 DOI: 10.3390/ijms241411411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 07/07/2023] [Accepted: 07/08/2023] [Indexed: 07/30/2023] Open
Abstract
Nematomorpha (hairworms) is a phylum of parasitic ecdysozoans, best known for infecting arthropods and guiding their hosts toward water, where the parasite can complete its life cycle. Over 350 species of nematomorphs have been described, yet molecular data for the group remain scarce. The few available mitochondrial genomes of nematomorphs are enriched with long inverted repeats, which are embedded in the coding sequences of their genes-a remarkably unusual feature exclusive to this phylum. Here, we obtain and annotate the repeats in the mitochondrial genome of another nematomorph species-Parachordodes pustulosus. Using genomic and transcriptomic libraries, we investigate the impact of inverted repeats on the read coverage of the mitochondrial genome. Pronounced drops in the read coverage coincide with regions containing long inverted repeats, denoting the 'blind spots' of short-fragment sequencing libraries. Phylogenetic inference with the novel data reveals multiple disagreements between the traditional system of Nematomorpha and molecular data, rendering several genera paraphyletic, including Parachordodes.
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Affiliation(s)
- Olga V. Nikolaeva
- Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory Str., 1, Bld. 40, Moscow 119991, Russia
| | - Aleksandra M. Beregova
- Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory Str., 1, Bld. 40, Moscow 119991, Russia
- Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Leninskie Gory Str., 1, Bld. 73, Moscow 119991, Russia
| | - Boris D. Efeykin
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskiy Ave., 33, Moscow 119071, Russia (S.E.S.)
- Institute for Information Transmission Problems (Kharkevich Institute), Russian Academy of Sciences, Bolshoy Karetny Per., 19, Bld. 1, Moscow 127051, Russia
| | - Tatiana S. Miroliubova
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskiy Ave., 33, Moscow 119071, Russia (S.E.S.)
| | - Andrey Yu. Zhuravlev
- Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory Str., 1, Bld. 12, Moscow 119991, Russia
| | - Andrey Yu. Ivantsov
- Borissiak Palaeontological Institute, Russian Academy of Sciences, Profsoyuznaya Str., 123, Moscow 117647, Russia
| | - Kirill V. Mikhailov
- Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory Str., 1, Bld. 40, Moscow 119991, Russia
- Institute for Information Transmission Problems (Kharkevich Institute), Russian Academy of Sciences, Bolshoy Karetny Per., 19, Bld. 1, Moscow 127051, Russia
| | - Sergei E. Spiridonov
- Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskiy Ave., 33, Moscow 119071, Russia (S.E.S.)
| | - Vladimir V. Aleoshin
- Belozersky Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory Str., 1, Bld. 40, Moscow 119991, Russia
- Institute for Information Transmission Problems (Kharkevich Institute), Russian Academy of Sciences, Bolshoy Karetny Per., 19, Bld. 1, Moscow 127051, Russia
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Infection patterns and new definitive host records for New Zealand gordiid hairworms (phylum Nematomorpha). Parasitol Int 2022; 90:102598. [PMID: 35568302 DOI: 10.1016/j.parint.2022.102598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 04/24/2022] [Accepted: 05/09/2022] [Indexed: 11/20/2022]
Abstract
Some parasites modify the phenotype of their host in order to increase transmission to another host or to an environment suitable for reproduction. This phenomenon, known as host manipulation, is found across many parasite taxa. Freshwater hairworms are known for the behavioural changes they cause in their terrestrial arthropod hosts, increasing their likelihood of entering water to exit the host and reproduce. Understanding how infected arthropods move around in the natural environment could help uncover alterations in spatial distribution or movement induced by hairworms in their terrestrial definitive hosts. Moreover, few hairworm-host records exist for New Zealand, so any additional record could help elucidate their true host specificity. Here, we investigated whether infected terrestrial arthropods were more likely to approach streams in two subalpine communities of invertebrates, using a spatial grid of specialised pitfall traps. Although hairworm infection could not explain the movements of arthropod hosts near streams, we found several new host records for hairworms, including the first records for the recently described Gordionus maori. We also found some new host-parasite associations for mermithid nematodes. These records show that the host specificity of hairworms is quite low, suggesting that their diversity and distribution may be greater than what is currently known for New Zealand.
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Doherty JF, Poulin R. The return to land: association between hairworm infection and aquatic insect development. Parasitol Res 2022; 121:667-673. [PMID: 35067741 DOI: 10.1007/s00436-021-07410-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 12/14/2021] [Indexed: 11/30/2022]
Abstract
Host manipulation by parasites can shape host behaviour, community structure, and the flow of energy through food webs. A well-known example of host manipulation comes from hairworms (phylum Nematomorpha), which somehow cause their terrestrial insect definitive hosts to enter water, a phenomenon that has received lots of attention in recent years. However, little focus has been directed towards the interactions between hairworms and their aquatic insect hosts and the return of dormant hairworms from water to land. Here, we ask whether hairworm cyst infections impact, either directly or indirectly, the life history of their aquatic transport hosts. By observing the development of last-instar Olinga jeanae (Trichoptera: Conoesucidae) caddisfly larvae naturally infected with Gordius-type hairworm cysts under controlled conditions, we found that higher numbers of cysts per infected caddisfly correlated with a decrease in time to pupation. These new observations suggest that, apart from the striking host manipulation that brings the parasite from land to water, the presence of dormant hairworms is associated with changes in the development of their aquatic hosts, either through direct or indirect mechanisms, which may accelerate their transition from water to land.
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Affiliation(s)
| | - Robert Poulin
- Department of Zoology, University of Otago, Dunedin, New Zealand
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Doherty JF, Poulin R. Come with me if you want to live: sympatric parasites follow different transmission routes through aquatic host communities. Int J Parasitol 2021; 52:293-303. [PMID: 34973954 DOI: 10.1016/j.ijpara.2021.11.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 11/24/2021] [Accepted: 11/25/2021] [Indexed: 11/25/2022]
Abstract
Community composition, including the relative density of each host species, plays a vital role in the transmission of parasites or disease in freshwater ecosystems. Whereas some host species can effectively transmit parasites, others can act as dead ends (non-viable transmission routes), accumulating large numbers of parasites throughout their life, thus becoming important sinks for parasite populations. Although population sinks have been identified in certain host-parasite systems, robust field estimates of the proportions of parasites that are lost to these hosts are lacking. Here, we quantified the distribution of encysted larval hairworms (phylum Nematomorpha), common parasites in lotic ecosystems, in two subalpine stream communities of New Zealand. With parasite and host population densities calculated per m2, we identified which host species most likely contributed to the transmission of three sympatric hairworm morphotypes identified in both streams, and which species acted as population sinks. We also tested for seasonal patterns and peaks in the abundance of each morphotype in the two communities over the sampling season. Finally, we tested whether hosts emerging from the streams had comparable abundances of hairworm morphotypes throughout the sampling period. For each morphotype, different key sets of host species harboured more hairworms on average (abundance) than others, depending on the stream. For one morphotype in particular, two species of hosts were found to be important population sinks that inhibited over a third of these parasites from completing their life cycle. We also observed a clear peak in abundance for another hairworm morphotype during summer. Our data suggest that hosts emerging from the streams matched their aquatic counterparts with respect to hairworm abundance, indicating no infection-dependent reduction in emergence success. Our findings suggest that, depending on relative community composition, sympatric parasites follow different host transmission pathways, some of which lead to dead ends that potentially impact overall infection dynamics. In turn, this information can help us understand the spread or emergence of disease in both freshwater and terrestrial environments, since hairworms infect terrestrial arthropods to complete their life cycle.
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Affiliation(s)
| | - Robert Poulin
- Department of Zoology, University of Otago, Dunedin, New Zealand
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Kakui K, Fukuchi J, Shimada D. First report of marine horsehair worms (Nematomorpha: Nectonema) parasitic in isopod crustaceans. Parasitol Res 2021; 120:2357-2362. [PMID: 34156539 DOI: 10.1007/s00436-021-07213-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2021] [Accepted: 06/07/2021] [Indexed: 10/21/2022]
Abstract
Nectonema, the only horsehair worm (Nematomorpha) genus found in marine environments, was previously known to be parasitic only in decapod crustaceans. We report Nectonema sp. as the first record of a marine nematomorph parasitic in isopod crustaceans. This is also the third record of marine nematomorphs from the North Pacific. Six infected isopods (Natatolana japonensis) collected from 1425 m of depth in the Sea of Japan each contained one to seven (mean 2.33) nematomorphs in the body cavity in the pereon. There was no correlation between the host body length and number of parasites. For Nectonema sp., we describe and illustrate morphological features of the parasitic juvenile stage and present nucleotide sequences for the cytochrome c oxidase subunit I gene (COI or cox1; 451 nt), 18S rRNA gene (1777 nt), and region spanning the internal transcribed spacer 1 (ITS1) and the 28S rRNA gene including the 5.8S rRNA gene and ITS2 (1218 nt in total). In an 18S maximum-likelihood tree that included 24 nematomorph species, Nectonema sp. grouped with N. agile from the northwestern Atlantic; the 18S gene from these two taxa was divergent by 11.8% K2P distance, suggesting that they are different species. Nectonema species may have a broader range of host groups than previously suspected, but may have been previously misidentified as nematode parasites.
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Affiliation(s)
- Keiichi Kakui
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
| | - Jun Fukuchi
- Seto Marine Biological Laboratory, Kyoto University, Nishimuro, 649-2211, Japan
| | - Daisuke Shimada
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
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Ogoh K, Futahashi R, Ohmiya Y. Intraspecific nucleotide polymorphisms in seven complete sequences of mitochondrial DNA of the luminous ostracod, Vargula hilgendorfii (Crustacea, Ostracoda). GENE REPORTS 2021. [DOI: 10.1016/j.genrep.2021.101074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Chiu MC, Huang CG, Wu WJ, Lin ZH, Chen HW, Shiao SF. A new millipede-parasitizing horsehair worm, Gordius chiashanus sp. nov., at medium altitudes in Taiwan (Nematomorpha, Gordiida). Zookeys 2020; 941:25-48. [PMID: 32595406 PMCID: PMC7311483 DOI: 10.3897/zookeys.941.49100] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 04/08/2020] [Indexed: 11/24/2022] Open
Abstract
Gordiuschiashanussp. nov., a newly described horsehair worm that parasitizes the Spirobolus millipede, is one of the three described horsehair worm species in Taiwan. It is morphologically similar to G.helveticus Schmidt-Rhaesa, 2010 because of the progressively broadening distribution of bristles concentrated on the male tail lobes, but it is distinguishable from G.helveticus because of the stout bristles on the mid-body. In addition, a vertical white stripe on the anterior ventral side and areoles on the inside wall of the cloacal opening are rarely mentioned in other Gordius species. Free-living adults emerged and mated on wet soil under the forest canopy in the winter (late November to early February) at medium altitudes (1100–1700 m). Mucus-like structure covering on the body surface, which creates a rainbow-like reflection, might endow the worm with high tolerance to dehydration. Although Gordiuschiashanussp. nov. seems to be more adaptive to the terrestrial environment than other horsehair worm species, cysts putatively identified as belonging to this hairworm species found in the aquatic paratenic host, Ephemeraorientalis McLachlan, 1875, suggest the life cycle of Gordiuschiashanussp. nov. could involve water and land. The free-living adults emerged from the definitive hosts might reproduce in the terrestrial environment or enter an aquatic habitat by moving or being washed away by heavy rain instead of manipulating the behavior of their terrestrial definitive hosts.
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Affiliation(s)
- Ming-Chung Chiu
- Department of Biology, Kobe University, Kobe 657-8501, Japan Kobe University Kobe Japan.,Current address: Department of Biology, National Changhua University of Education, Changhua City 55007, Taiwan National Changhua University of Education Changhua Taiwan
| | - Chin-Gi Huang
- National Mosquito-Borne Diseases Control Research Center, National Health Research Institutes, Tainan City 704, Taiwan National Health Research Institutes Tainan Taiwan.,Department of Earth and Life Science, University of Taipei, Taipei 100, Taiwan University of Taipei Taipei Taiwan
| | - Wen-Jer Wu
- Department of Entomology, National Taiwan University, Taipei 106, Taiwan National Taiwan University Taipei Taiwan
| | - Zhao-Hui Lin
- Department of Biological Resources, National Chiayi University, Chiayi 300, Taiwan National Chiayi University Chiayi Taiwan
| | - Hsuan-Wien Chen
- Department of Biological Resources, National Chiayi University, Chiayi 300, Taiwan National Chiayi University Chiayi Taiwan
| | - Shiuh-Feng Shiao
- Department of Entomology, National Taiwan University, Taipei 106, Taiwan National Taiwan University Taipei Taiwan
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The mitochondrial genomes of the mesozoans Intoshia linei, Dicyema sp. and Dicyema japonicum. ACTA ACUST UNITED AC 2018; 4. [PMID: 30105092 DOI: 10.1017/pao.2018.12] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The Dicyemida and Orthonectida are two groups of tiny, simple, vermiform parasites that have historically been united in a group named the Mesozoa. Both Dicyemida and Orthonectida have just two cell layers and appear to lack any defined tissues. They were initially thought to be evolutionary intermediates between protozoans and metazoans but more recent analyses indicate that they are protostomian metazoans that have undergone secondary simplification from a complex ancestor. Here we describe the first almost complete mitochondrial genome sequence from an orthonectid, Intoshia linei, and describe nine and eight mitochondrial protein-coding genes from Dicyema sp. and Dicyema japonicum, respectively. The 14,247 base pair long I. linei sequence has typical metazoan gene content, but is exceptionally AT-rich, and has a unique gene order. The data we have analysed from the Dicyemida provide very limited support for the suggestion that dicyemid mitochondrial genes are found on discrete mini-circles, as opposed to the large circular mitochondrial genomes that are typical of the Metazoa. The cox1 gene from dicyemid species has a series of conserved, in-frame deletions that is unique to this lineage. Using cox1 genes from across the genus Dicyema, we report the first internal phylogeny of this group.
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Yadav AK, Tobias ZJC, Schmidt-Rhaesa A. Gordionus maori (Nematomorpha: Gordiida), a new species of horsehair worm from New Zealand. NEW ZEALAND JOURNAL OF ZOOLOGY 2017. [DOI: 10.1080/03014223.2017.1329155] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Arun K. Yadav
- Department of Zoology, North-Eastern Hill University, Shillong, India
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