A century of poultry genetics

The British Ixworth: individual growth and egg production of a purebred dual-purpose chicken

1. Killing male one-day-old chicks, especially from layer lines, is banned in some European countries. Therefore, dual-purpose chickens, where each sex is used for meat and egg production, respectively, offer an alternative production solution. This study evaluated the British purebred breed Ixworth as a dual-purpose chicken for meat and egg production.2. Ixworth chicks (n = 167) were hatched and reared mixed-sex in a floor housing system, with two groups receiving a commercial pullet diet (treatment 1) and two groups receiving a diet composed for males of layer lines (treatment 2). Individual chick performance data were recorded. Males were slaughtered at 12 weeks of age, and their growth rate and carcase variables were analysed. All hens were continuously reared on the pullet diet and kept in a free-range system from 20 weeks old for one laying period (52 weeks). In addition, group-based feed consumption and mortality were recorded.3. Cockerels in treatment 1 and 2 showed significantly different [T(88) = -2.846, P = 0.003] growth rates (25.3 vs. 27.4 g/day) and average final weights (2166 g vs. 2344 g). The hens in treatment 1 (n = 41) laid an average of 193 eggs per hen housed (mean egg weight: 56.9 g), whereas those in treatment 2 (n = 35) laid 195 eggs per hen housed (mean egg weight: 56.5 g). Nest acceptance was >97.5% and feed consumption was up to 140 g/bird/day.4. The results showed that the Ixworth may be a suitable breed for dual-purpose use and could be improved through selective breeding, offering potential for preservation of this local breed as well as general biodiversity in poultry farming.

Animal board invited review: The purebred-crossbred genetic correlation in poultry

The purebred-crossbred genetic correlation (rpc) is a key parameter to determine whether the optimal selection of purebred animals to improve crossbred performance should rely on crossbred phenotypes, purebred phenotypes, or both. We reviewed published estimates of the rpc in poultry. In total, 19 studies were included, of which four were on broilers and 15 on laying hens, with 150 rpc estimates for nine different trait categories. Average reported rpc estimates were highest for egg weight, egg quality and egg colour (0.74-0.82), intermediate for BW, maturity and mortality (0.61-0.70) and egg number (0.58), and low for resilience (0.40) and body conformation (0.14). Most studies were based on measuring purebred and crossbred phenotypes in the same environment and thus did not capture the contribution of genotype by environment interactions to the rpc, suggesting that the presented average estimates may be higher than values that apply in practice. Nearly all studies were based on two-way crossbred animals. We hypothesised that rpc values for a two-way cross are good proxies for rpc of a four-way cross. Only eight out of 19 studies were published in the last 25 years, and only two of those used genomic data. We expect that more studies using genomic data may be published in the coming years, as the required data may be generated when implementing genomic selection for crossbred performance, which will lead to more accurate rpc estimates. Future studies that aim to estimate rpc are encouraged to capture the genotype by environment interaction component by housing purebred and crossbred animals differently as is done in practice. Moreover, there is a need for further studies that enable to explicitly estimate the magnitude of genotype by environment versus genotype by genotype interactions for multiple trait categories. Further, studies are advised to report: the specific housing conditions of the animals, any differences between measurements of purebred versus crossbred performance, and the heritabilities of purebred and crossbred performance.

Evolutions in Commercial Meat Poultry Breeding

This paper provides a comprehensive overview of the history of commercial poultry breeding, from domestication to the development of science and commercial breeding structures. The development of breeding goals over time, from mainly focusing on production to broad goals, including bird welfare and health, robustness, environmental impact, biological efficiency and reproduction, is detailed. The paper outlines current breeding goals, including traits (e.g., on foot and leg health, contact dermatitis, gait, cardiovascular health, robustness and livability), recording techniques, their genetic basis and how trait these antagonisms, for example, between welfare and production, are managed. Novel areas like genomic selection and gut health research and their current and potential impact on breeding are highlighted. The environmental impact differences of various genotypes are explained. A future outlook shows that balanced, holistic breeding will continue to enable affordable lean animal protein to feed the world, with a focus on the welfare of the birds and a diversity of choice for the various preferences and cultures across the world.

Genetic Parameter Estimates of Growth Curve and Feed Efficiency Traits in Japanese Quail

This study aimed to estimate heritabilities for weekly body weight traits, the Gompertz growth curve parameters, and feed efficiency characteristics, as well as genetic correlations among characteristics. A total of 700 Japanese quails with pedigree records were used in this study. Body weight and feed consumption were measured individually on a weekly basis. Using weekly body weight data, the growth model parameters were estimated for each bird using the Gompertz nonlinear regression model. Multi-trait variance-covariance matrices were obtained with Bayesian inference using the Gibbs sampler. While estimates of high heritability (0.59 to 0.61) were found for weekly body weight traits, estimates of moderate heritability (0.23 to 0.37) were determined for feed intake and feed conversion efficiency traits. The estimated heritabilities for the parameters of the Gompertz model and inflection point coordinates were moderate (0.37 to 0.47). While genetic correlations between feed intake and body weight characteristics were positive and moderate (0.28 to 0.49), the genetic correlations between feed conversion efficiency and body weight traits were positive and strong (0.52 to 0.83). It has been concluded that the moderate negative genetic relationship between feed conversion efficiency and body weight may constrain selection studies. Due to the weak genetic correlation between the asymptotic body weight parameter of the Gompertz model and the feed conversion efficiency, it is thought that the total genetic gain will be greater if the mature weight parameter is also used as a selection criterion in genetic improvement studies.

Heat Shock Protein Response to Stress in Poultry: A Review

Compared to other animal species, production has dramatically increased in the poultry sector. However, in intensive production systems, poultry are subjected to stress conditions that may compromise their well-being. Much like other living organisms, poultry respond to various stressors by synthesising a group of evolutionarily conserved polypeptides named heat shock proteins (HSPs) to maintain homeostasis. These proteins, as chaperones, play a pivotal role in protecting animals against stress by re-establishing normal protein conformation and, thus, cellular homeostasis. In the last few decades, many advances have been made in ascertaining the HSP response to thermal and non-thermal stressors in poultry. The present review focuses on what is currently known about the HSP response to thermal and non-thermal stressors in poultry and discusses the factors that modulate its induction and regulatory mechanisms. The development of practical strategies to alleviate the detrimental effects of environmental stresses on poultry will benefit from detailed studies that describe the mechanisms of stress resilience and enhance our understanding of the nature of heat shock signalling proteins and gene expression.

The microbiological and sensory status of dual-purpose chickens (Lohmann Dual), male Lohmann Brown Plus chickens, and conventional laying hens slaughtered in a laying hen abattoir compared to conventional broilers slaughtered in a broiler abattoir

Alternatives to conventional chicken meat and egg production are increasingly under discussion, especially because of the common practice of killing male day-old chicks from laying lines which has been banned from the beginning of 2022 in Germany and is planned to be banned during 2022 in other countries. Production of dual-purpose chicken lines is one possible solution, as such lines combine moderate laying and growth performance. The microbiological status of products from such breeds must be comparable to existing products on the market for food safety purposes. Additionally, the production of such products will take longer because of the feeding regimes required, and again, comparability should be safeguarded for the best consumer protection. The dual-purpose chicken line, Lohmann Dual (males), was compared to males from the laying line Lohmann Brown Plus, conventional laying hens (all slaughtered and processed in the same conventional laying hen abattoir), and conventional broilers (slaughtered in a conventional broiler abattoir). Neck skin samples were taken before chilling at the end of each slaughter line to determine the microbial status of the carcasses. Additionally, fresh and cooked meat sensory analysis was performed on meat from broilers and male and female Lohmann Dual and Lohmann Brown Plus chickens (for three carcasses of each group) at the German Agricultural Society Test Center in Kassel. The focus was on the performance of male Lohmann Dual compared to the other lines. There was no difference in the Enterobacteriaceae count of the dual-purpose chicken line compared to conventional broilers, whereas laying hens had a significantly higher microbial load before chilling, as based on neck skin examinations (p<0.001). According to sensory test results, the meat from dual-purpose chickens was the best (as no defects were found) among the five chicken meat types examined. In conclusion, based on their microbial status and sensory analysis of fresh and cooked meat, Lohmann Dual males slaughtered in a laying hen abattoir can be considered as an alternative to conventionally kept broilers slaughtered in a broiler abattoir.

Growth performance, organ attributes, nutrient and caloric utilization in broiler chickens differing in growth rates when fed a corn-soybean meal diet with multienzyme supplement containing phytase, protease and fiber degrading enzymes

Growth performance, organ weight, ceca digesta short chain fatty acids (SCFA), jejunal histomorphometry, tibia ash, apparent retention (AR) of components and caloric efficiency were investigated in broiler chicken strains differing in growth rate fed diets with multienzyme supplement (MES). The strains differed in estimated time to reach 2.1 kg BW: 37, 43, 47, and 50 d and were designated C, F, J, and N, respectively. A corn-soybean meal diet was formulated for 2-phase program (starter and grower) and fed without or with MES containing phytase, protease and fiber-degrading enzymes. A total of 640-day-old chicks (42.3 + 0.01 g/bird) were housed in cages (5 cockerels and 5 pullets/cage) and allocated to give 8 replicates/ strain and diet combination. Equal amount of feed was fed based on observed ad-libitum intake of C strain in the starter (d 0-14) and grower (d 15-28). Body weight was monitored, grab excreta samples taken and at completion of allocated feed one bird per cage necropsied for samples. With exception of P, apparent metabolizable energy corrected for nitrogen (AMEn) and ceca digesta acetic acid, there was no (P > 0.05) interaction between strain and MES on examined responses. Strains differed (P < 0.01) on growth, FCR, gizzard weight, tibia ash, breast weight, ceca digesta concentration of lactic, propionic, and isobutyric acid and caloric efficiency. The final body weight (BW) was 1,344, 1,134, 959, and 916 g/bird for C, F, J, and N, respectively. Corresponding caloric efficiency was 4,930, 5,807, 6,680 and 7,199 kcal/kg BW gain, respectively. Birds fed MES had higher BW gain (P < 0.05) in grower phase, larger gizzard, higher AR of CP, crude fat, neutral detergent fiber, and Ca than non-MES birds. In conclusion, growth rate influenced organ attributes, nutrient, and caloric utilization. Enzyme supplementation improved growth in grower phase and nutrient utilization independent of strain, suggesting that effects of feed enzymes are not influenced by inherent growth rate.

Keel bone fractures are more prevalent in White Leghorn hens than in Red Jungle fowl hens-A pilot study

Fractures and deviations to the keel bone are common in commercial laying hens, with reported variations in occurrence across strains and breeds. The aetiology is not fully understood, however, modern genetics and selection for efficient egg production has been claimed to be important factors for the keel bone fractures. To explore this further, we investigated keel bones from two different breeds, representing different degrees of selection for egg production: Red jungle fowl (n = 82), and White Leghorn (n = 32), where the latter is a selected laying breed which is the origin for many modern laying hen hybrids. Keel bones from a total of 116 birds, 53 hens and 63 roosters, were examined by necropsy at 80 weeks of age. All birds were raised in modified aviaries in the same holding facility. Overall, 24.5% of the hens had one or more fractures to the keel, with a difference in the prevalence between hens from the two breeds (p<0.01): 10% (95% CI: 3.7–24%) in the Red Jungle fowl hens and 69% (95% CI: 37–90%) in the White Leghorn hens. No roosters, regardless of breed, had keel bone fractures. Mild to moderate keel bone deviations were present in 54% (95% CI: 25–80%) of the hens and 4.7% (95% CI: 0.5–30%) of the roosters, all White Leghorns.

Research Note: Comparative gastrointestinal, tibia, and plasma attributes in 48-day-old fast- and slow-growing broiler chicken strains

Emerging market differentiation for broiler meat from strains exhibiting a range of growth rates is necessitating comparative research on various physiological and production aspects of these strains. The objective of the present study was to compare select gastrointestinal, tibial, and plasma attributes in a sample of 48-day-old (50 male and 50 female) broilers obtained from fast-and slow-growing flocks maintained under similar feed and management regimens. Eight birds were randomly selected from a fast (B; representative of modern commercial strains) and each of the 4 slow-growing strains (SG; D, H, M, and E). The strains differed by estimated time to reach 2.2 kg bodyweight corresponding to 36, 50, 42, 44, and 50 D for B, D, H, M, and E, respectively. Blood samples were collected to determine plasma metabolites, and birds were subsequently euthanized, weighed, and necropsied for gizzard and small intestine weight, jejunal tissue for histomorphology, ceca digesta samples for concentration of short-chain fatty acids (SCFA) and left tibia for ash content. Gizzard was heavier (P < 0.01) for D, H, and M than that for B and E, whereas the small intestine was lighter (P < 0.01) for B, D, and H than for M and E. There were no (P > 0.05) strain differences on SCFA, jejunal villus height and crypt depth, plasma proteins, and electrolytes. Strains D, H, and M exhibited higher (P = 0.01) tibia ash concentration than B; E was intermediate and not different (P > 0.05) from any strain. Specifically, the tibia ash for B, D, H, SG 3, and E were 1.24, 1.44, 1.43, 1.49, and 1.39 g/kg BW, respectively. The B birds showed higher (P < 0.01) plasma concentrations of aspartate transaminase, creatine kinase, lactate dehydrogenase, and creatinine than SG strains. In conclusion, although B and some SG strains had lighter gastrointestinal tract indicative of energy efficiency, higher circulating plasma enzymes in B birds suggested impaired hepatic function. Moreover, lower tibia ash in B suggested disproportionate body mass relative to skeletal support.

The SYNBREED chicken diversity panel: a global resource to assess chicken diversity at high genomic resolution

BACKGROUND

Since domestication, chickens did not only disperse into the different parts of the world but they have also undergone significant genomic changes in this process. Many breeds, strains or lines have been formed and those represent the diversity of the species. However, other than the natural evolutionary forces, management practices (including those that threaten the persistence of genetic diversity) following domestication have shaped the genetic make-up of and diversity between today's chicken breeds. As part of the SYNBREED project, samples from a wide variety of chicken populations have been collected across the globe and were genotyped with a high density SNP array. The panel consists of the wild type, commercial layers and broilers, indigenous village/local type and fancy chicken breeds. The SYNBREED chicken diversity panel (SCDP) is made available to serve as a public basis to study the genetic structure of chicken diversity. In the current study we analyzed the genetic diversity between and within the populations in the SCDP, which is important for making informed decisions for effective management of farm animal genetic resources.

RESULTS

Many of the fancy breeds cover a wide spectrum and clustered with other breeds of similar supposed origin as shown by the phylogenetic tree and principal component analysis. However, the fancy breeds as well as the highly selected commercial layer lines have reduced genetic diversity within the population, with the average observed heterozygosity estimates lower than 0.205 across their breeds' categories and the average proportion of polymorphic loci lower than 0.680. We show that there is still a lot of genetic diversity preserved within the wild and less selected African, South American and some local Asian and European breeds with the average observed heterozygosity greater than 0.225 and the average proportion of polymorphic loci larger than 0.720 within their breeds' categories.

CONCLUSIONS

It is important that such highly diverse breeds are maintained for the sustainability and flexibility of future chicken breeding. This diversity panel provides opportunities for exploitation for further chicken molecular genetic studies. With the possibility to further expand, it constitutes a very useful community resource for chicken genetic diversity research.

Does selection for growth rate in broilers affect their resistance and tolerance to Eimeria maxima?

Chickens exhibit varied responses to infection with Eimeria parasites. We hypothesise that broilers selected for increased growth rate will show lower resistance and tolerance to a coccidian challenge. 288 chickens of fast (F) or slow (S) growing lines were inoculated with 0 (control), 2500 (low-dose), or 7000 (high-dose) sporulated E. maxima oocysts at 13 days of age in two consecutive rounds. Gain and Intake were measured daily and their values relative to BW at the point of infection were calculated over the pre-patent (days 1-4 post-infection), acute (d5-8 pi), and recovery (d9-12 pi) phases of infection to assess the impact of infection. Levels of plasma carotenoids, vitamins E and A, long bone mineralisation, caecal microbiota diversity indices, and histological measurements were assessed at the acute (d6 pi) and recovery stage (d13 pi). In addition, we measured the levels of nitric oxide metabolites and the number of parasite genome copies in the jejunumat d6pi. In absolute terms F birds grew 1.42 times faster than S birds when not infected. Infection significantly reduced relative daily gain and intake (P < 0.001), with the effects being most pronounced during the acute phase (P < 0.001). Levels of all metabolites were significantly decreased, apart from NO which increased (P < 0.001) in response to infection on d6pi, and were accompanied by changes in histomorphometric features and the presence of E. maxima genome copies in infected birds, which persisted to d13pi. Furthermore, infection reduced tibia and femur mineralisation, which also persisted to d13pi. Reductions in measured variables were mostly independent of dose size, as was the level of parasite replication. The impact of infection was similar for S and F-line birds for all measured parameters, and there were no significant interactions between line x dose size on any of these parameters. In conclusion, our results suggest that line differences in productive performance do not influence host responses to coccidiosis when offered nutrient adequate diets.

Revised methane emissions factors and spatially distributed annual carbon fluxes for global livestock

BACKGROUND

Livestock play an important role in carbon cycling through consumption of biomass and emissions of methane. Recent research suggests that existing bottom-up inventories of livestock methane emissions in the US, such as those made using 2006 IPCC Tier 1 livestock emissions factors, are too low. This may be due to outdated information used to develop these emissions factors. In this study, we update information for cattle and swine by region, based on reported recent changes in animal body mass, feed quality and quantity, milk productivity, and management of animals and manure. We then use this updated information to calculate new livestock methane emissions factors for enteric fermentation in cattle, and for manure management in cattle and swine.

RESULTS

Using the new emissions factors, we estimate global livestock emissions of 119.1 ± 18.2 Tg methane in 2011; this quantity is 11% greater than that obtained using the IPCC 2006 emissions factors, encompassing an 8.4% increase in enteric fermentation methane, a 36.7% increase in manure management methane, and notable variability among regions and sources. For example, revised manure management methane emissions for 2011 in the US increased by 71.8%. For years through 2013, we present (a) annual livestock methane emissions, (b) complete annual livestock carbon budgets, including carbon dioxide emissions, and (c) spatial distributions of livestock methane and other carbon fluxes, downscaled to 0.05 × 0.05 degree resolution.

CONCLUSIONS

Our revised bottom-up estimates of global livestock methane emissions are comparable to recently reported top-down global estimates for recent years, and account for a significant part of the increase in annual methane emissions since 2007. Our results suggest that livestock methane emissions, while not the dominant overall source of global methane emissions, may be a major contributor to the observed annual emissions increases over the 2000s to 2010s. Differences at regional and local scales may help distinguish livestock methane emissions from those of other sectors in future top-down studies. The revised estimates allow improved reconciliation of top-down and bottom-up estimates of methane emissions, will facilitate the development and evaluation of Earth system models, and provide consistent regional and global Tier 1 estimates for environmental assessments.

Validation of Alternative Transcript Splicing in Chicken Lines that Differ in Genetic Resistance to Marek's Disease

Utilizing RNA-seq data, 1,574 candidate genes with alternative splicing were previously identified between two chicken lines that differ in Marek's disease (MD) genetic resistance under control and Marek's disease virus infection conditions. After filtering out 1,530 genes with splice variants in the first or last exon, 44 genes were screened for possible exon loss or gain using PCR and gel electrophoresis. Consequently, 7 genes exhibited visually detectable differential expression of splice variants between lines 6 (MD resistant) and 7 (MD susceptible), and the resultant PCR products verified by DNA sequencing. Birds from inbred line 6 have transcripts that preferentially retain an exon compared to line 7 chickens for ITGB2, SGPL1, and COMMD5. Birds from inbred line 7 have alleles that preferentially retain an exon compared to line 6 for MOCS2. CCBL2 exon 1a is absent and ATAD1 exon 2 is truncated by 87 nucleotides in transcripts expressed by line 7 compared to those from line 6. For CHTF18, line 6 transcripts have an indel mutation with 7 additional nucleotides in exon 21 compared to line 7. The current study validates 7 genes with alternatively spliced isomers between the two chicken lines, which helps provide potential underlying mechanisms for the phenotypic differences.

Evolution of the Modern Broiler and Feed Efficiency

Although the chicken was domesticated during the Neolithic period, the development of the modern broiler is a recent event that has occurred within the past 100 years. The chicken’s adaptability has allowed it to be grown globally under a range of husbandry conditions. That is, the same genetic stock may be found in a range of environments, where it is noted for rapid growth to market weight and efficiency of feed use, which has increased dramatically, mainly through genetic selection. Under good husbandry and a high-energy diet, at 35 days of age a 1.40-kg broiler required 3.22 kg of feed in 1985. Twenty-five years later, we have a 2.44-kg broiler produced on 3.66 kg of feed. This review attempts to address the history of factors contributing to these changes, obstacles that have had to be overcome, and future limitations.

Effect of transportation duration of 1-day-old chicks on postplacement production performances and pododermatitis of broilers up to slaughter age

This experiment studied the effect of transportation duration of 1-d-old chicks on dehydration, mortality, production performance, and pododermatitis during the growout period. Eggs from the same breeder flock (Ross PM3) were collected at 35, 45, and 56 wk of age, for 3 successive identical experiments. In each experiment, newly hatched chicks received 1 of 3 transportation duration treatments from the hatchery before placement in the on-site rearing facility: no transportation corresponding to direct placement in less than 5 min (T00), or 4 (T04) or 10 h (T10) of transportation. The chicks were housed in 35-m(2) pens (650 birds each) and reared until 35 d old. Hematocrit and chick BW were measured on sample chicks before and after transportation. During the growout period, bird weight, feed uptake, and feed conversion ratio were measured weekly until slaughter. Transportation duration affected BW; T00 groups had a significantly higher BW than T04 and T10 transported birds but this effect lasted only until d 21. No clear effect on hematocrit, feed uptake, feed conversion ratio, or mortality was observed for birds transported up to 10 h. The decrease in weight in T10 birds was associated with less severe pododermatitis. Increasing age of the breeder flock was correlated with reduced egg fertility and hatchability, and also with higher quality and BW of hatched chicks. Chicks from older breeders also exhibited reduced mortality during the growout period.