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Cao B, Haelewaters D, Schoutteten N, Begerow D, Boekhout T, Giachini AJ, Gorjón SP, Gunde-Cimerman N, Hyde KD, Kemler M, Li GJ, Liu DM, Liu XZ, Nuytinck J, Papp V, Savchenko A, Savchenko K, Tedersoo L, Theelen B, Thines M, Tomšovský M, Toome-Heller M, Urón JP, Verbeken A, Vizzini A, Yurkov AM, Zamora JC, Zhao RL. Delimiting species in Basidiomycota: a review. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00479-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Stalpers JA, Redhead SA, May TW, Rossman AY, Crouch JA, Cubeta MA, Dai YC, Kirschner R, Langer GJ, Larsson KH, Mack J, Norvell LL, Oberwinkler F, Papp V, Roberts P, Rajchenberg M, Seifert KA, Thorn RG. Competing sexual-asexual generic names in Agaricomycotina (Basidiomycota) with recommendations for use. IMA Fungus 2021; 12:22. [PMID: 34380577 PMCID: PMC8359032 DOI: 10.1186/s43008-021-00061-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Accepted: 04/03/2021] [Indexed: 11/10/2022] Open
Abstract
With the change to one scientific name for fungal taxa, generic names typified by species with sexual or asexual morph types are being evaluated to determine which names represent the same genus and thus compete for use. In this paper generic names of the Agaricomycotina (Basidiomycota) were evaluated to determine synonymy based on their type. Forty-seven sets of sexually and asexually typified names were determined to be congeneric and recommendations are made for which generic name to use. In most cases the principle of priority is followed. However, 16 generic names are recommended for use that do not have priority and thus need to be protected: Aleurocystis over Matula; Armillaria over Acurtis and Rhizomorpha; Asterophora over Ugola; Botryobasidium over Acladium, Allescheriella, Alysidium, Haplotrichum, Physospora, and Sporocephalium; Coprinellus over Ozonium; Coprinopsis over Rhacophyllus; Dendrocollybia over Sclerostilbum and Tilachlidiopsis; Diacanthodes over Bornetina; Echinoporia over Echinodia; Neolentinus over Digitellus; Postia over Ptychogaster; Riopa over Sporotrichum; Scytinostroma over Artocreas, Michenera, and Stereofomes; Tulasnella over Hormomyces; Typhula over Sclerotium; and Wolfiporia over Gemmularia and Pachyma. Nine species names are proposed for protection: Botryobasidium aureum, B. conspersum, B. croceum, B. simile, Pellicularia lembosporum (syn. B. lembosporum), Phanerochaete chrysosporium, Polyporus metamorphosus (syn. Riopa metamorphosa), Polyporus mylittae (syn. Laccocephalum mylittae), and Polyporus ptychogaster (syn. Postia ptychogaster). Two families are proposed for protection: Psathyrellaceae and Typhulaceae. Three new species names and 30 new combinations are established, and one lectotype is designated.
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Affiliation(s)
| | - Scott A Redhead
- Ottawa Research and Development Centre, Science and Technology Branch, Agriculture and Agri-Food Canada, CEF, Ottawa, Ontario, K1A OC6, Canada
| | - Tom W May
- Royal Botanic Gardens Victoria, 100 Birdwood Avenue, Melbourne, Victoria, 3004, Australia
| | - Amy Y Rossman
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.
| | - Jo Anne Crouch
- USDA-ARS, Mycology & Nematology Genetic Diversity & Biology Laboratory, Beltsville, MD, 20705, USA
| | - Marc A Cubeta
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27606, USA
| | - Yu-Cheng Dai
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Roland Kirschner
- Department of Biomedical Sciences and Engineering, National Central University, Zhongli District, Taoyuan City, 320, Taiwan, Republic of China
| | - Gitta Jutta Langer
- Department of Forest Protection, Northwest German Forest Research Institute (NW-FVA), 37079, Goettingen, Lower Saxony, Germany
| | | | - Jonathan Mack
- Ottawa Research and Development Centre, Science and Technology Branch, Agriculture and Agri-Food Canada, CEF, Ottawa, Ontario, K1A OC6, Canada
| | | | - Franz Oberwinkler
- Lehrstuhl für Spezielle Botanik und Mykologie, Botanisches Institut, Universität, Auf der Morgenstelle 1, 72076, Tübingen, Germany
| | - Viktor Papp
- Department of Botany, Institute of Agronomy, Hungarian University of Agriculture and Life Sciences, Budapest, Hungary
| | | | - Mario Rajchenberg
- Centro Forestal CIEFAP, C.C. 14, 9200, Esquel, Chubut, Argentina.,National Research Council of Argentina (CONICET), Buenos Aires, Argentina
| | - Keith A Seifert
- Department of Biology, Carlton University, Ottawa, Ontario, K1S 5B6, Canada
| | - R Greg Thorn
- Department of Biology, The University of Western Ontario, London, Ontario, N6A 5B7, Canada
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He MQ, Zhao RL, Hyde KD, Begerow D, Kemler M, Yurkov A, McKenzie EHC, Raspé O, Kakishima M, Sánchez-Ramírez S, Vellinga EC, Halling R, Papp V, Zmitrovich IV, Buyck B, Ertz D, Wijayawardene NN, Cui BK, Schoutteten N, Liu XZ, Li TH, Yao YJ, Zhu XY, Liu AQ, Li GJ, Zhang MZ, Ling ZL, Cao B, Antonín V, Boekhout T, da Silva BDB, De Crop E, Decock C, Dima B, Dutta AK, Fell JW, Geml J, Ghobad-Nejhad M, Giachini AJ, Gibertoni TB, Gorjón SP, Haelewaters D, He SH, Hodkinson BP, Horak E, Hoshino T, Justo A, Lim YW, Menolli N, Mešić A, Moncalvo JM, Mueller GM, Nagy LG, Nilsson RH, Noordeloos M, Nuytinck J, Orihara T, Ratchadawan C, Rajchenberg M, Silva-Filho AGS, Sulzbacher MA, Tkalčec Z, Valenzuela R, Verbeken A, Vizzini A, Wartchow F, Wei TZ, Weiß M, Zhao CL, Kirk PM. Notes, outline and divergence times of Basidiomycota. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00435-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
AbstractThe Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of their phylogeny and evolution.
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Hughes KW, Mather DA, Petersen RH. A new genus to accommodateGymnopus acervatus(Agaricales). Mycologia 2017; 102:1463-78. [DOI: 10.3852/09-318] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | | | - Ronald H. Petersen
- Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee 37996-1100
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Hofstetter V, Redhead SA, Kauff F, Moncalvo JM, Matheny PB, Vilgalys R. Taxonomic Revision and Examination of Ecological Transitions of the Lyophyllaceae (Basidiomycota, Agaricales) Based on a Multigene Phylogeny. CRYPTOGAMIE MYCOL 2014. [DOI: 10.7872/crym.v35.iss4.2014.399] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Alvarado P, Moreno G, Vizzini A, Consiglio G, Manjón JL, Setti L. Atractosporocybe, Leucocybe and Rhizocybe: three new clitocyboid genera in the Tricholomatoid clade (Agaricales) with notes on Clitocybe and Lepista. Mycologia 2014; 107:123-36. [PMID: 25344261 DOI: 10.3852/13-369] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A molecular multigene analysis (ITS, 18S and 28S nrLSU ribosomal DNA, tef1, rpb2) was used to support the proposition of three new genera of clitocyboid fungi. Leucocybe is proposed to accommodate the clade formed by Clitocybe connata and C. candicans. Clitocybe inornata is invested as type species of Atractosporocybe, while the new genus, Rhizocybe, is proposed for the former species of section Vernae of Clitocybe, C. vermicularis, C. pruinosa and C. rhizoides. The three lineages are related to the families Lyophyllaceae and Entolomataceae and independent from the Clitocybeae clade. Morphologically Rhizocybe is characterized by the presence of conspicuous rhizomorphs, while Atractosporocybe presents long fusiform spores. Leucocybe includes two whitish species in the former section Candicantes of Clitocybe, but no relevant shared characteristic feature was detected. Other whitish clitocyboid species, such as C. phyllophila (= C. cerussata), C. dealbata, C. rivulosa, and Singerocybe hydrogramma, are shown to be genetically related to the core lineage of the Clitocybeae.
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Affiliation(s)
- Pablo Alvarado
- Departamento de Ciencias de la Vida (Botanica), Universidad de Alcalá, Facultad de Biología, Alcalá de Henares, 28871 Madrid, Spain
| | - Gabriel Moreno
- Departamento de Ciencias de la Vida (Botanica), Universidad de Alcalá, Facultad de Biología, Alcalá de Henares, 28871 Madrid, Spain
| | - Alfredo Vizzini
- Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università di Torino, Viale P.A. Mattioli 25, I-10125, Torino, Italy
| | | | - José Luis Manjón
- Departamento de Ciencias de la Vida (Botanica), Universidad de Alcalá, Facultad de Biología, Alcalá de Henares, 28871 Madrid, Spain
| | - Ledo Setti
- Via C. Pavese, 1, I 46029, Suzzara (MN), Italy
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Zervakis GI, Ntougias S, Gargano ML, Besi MI, Polemis E, Typas MA, Venturella G. A reappraisal of the Pleurotus eryngii complex - new species and taxonomic combinations based on the application of a polyphasic approach, and an identification key to Pleurotus taxa associated with Apiaceae plants. Fungal Biol 2014; 118:814-34. [PMID: 25209640 DOI: 10.1016/j.funbio.2014.07.001] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2014] [Revised: 06/24/2014] [Accepted: 07/01/2014] [Indexed: 11/30/2022]
Abstract
The Pleurotus eryngii species-complex comprises choice edible mushrooms growing on roots and lower stem residues of Apiaceae (umbellifers) plants. Material deriving from extensive sampling was studied by mating compatibility, morphological and ecological criteria, and through analysis of ITS1-5.8S-ITS2 and IGS1 rRNA sequences. Results revealed that P. eryngii sensu stricto forms a diverse and widely distributed aggregate composed of varieties elaeoselini, eryngii, ferulae, thapsiae, and tingitanus. Pleurotuseryngii subsp. tuoliensis comb. nov. is a phylogenetically sister group to the former growing only on various Ferula species in Asia. The existence of Pleurotusnebrodensis outside of Sicily (i.e., in Greece) is reported for the first time on the basis of molecular data, while P. nebrodensis subsp. fossulatus comb. nov. is a related Asiatic taxon associated with the same plant (Prangos ferulacea). Last, Pleurotusferulaginis sp. nov. grows on Ferulago campestris in northeast Italy, Slovenia and Hungary; it occupies a distinct phylogenetic position accompanied with significant differences in spore size and mating incompatibility versus other Pleurotus populations. Coevolution with umbellifers and host/substrate specificity seem to play key roles in speciation processes within this fungal group. An identification key to the nine Pleurotus taxa growing in association with Apiaceae plants is provided.
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Affiliation(s)
- Georgios I Zervakis
- Agricultural University of Athens, Laboratory of General and Agricultural Microbiology, Iera Odos 75, 11855 Athens, Greece.
| | - Spyridon Ntougias
- Democritus University of Thrace, Department of Environmental Engineering, Laboratory of Wastewater Management and Treatment Technologies, Vas. Sofias 12, 67100 Xanthi, Greece
| | - Maria Letizia Gargano
- Università di Palermo, Department of Agricultural and Forest Sciences, Viale delle Scienze, 11, 90128 Palermo, Italy
| | - Maria I Besi
- John Innes Centre, Department of Disease and Stress Biology, Colney Lane, Norwich NR4 7UH, UK
| | - Elias Polemis
- Agricultural University of Athens, Laboratory of General and Agricultural Microbiology, Iera Odos 75, 11855 Athens, Greece
| | - Milton A Typas
- National and Kapodistrian University of Athens, Department of Genetics and Biotechnology, Faculty of Biology, Panepistemiopolis, Athens 15701, Greece
| | - Giuseppe Venturella
- Università di Palermo, Department of Agricultural and Forest Sciences, Viale delle Scienze, 11, 90128 Palermo, Italy
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Quandt CA, Kepler RM, Gams W, Araújo JPM, Ban S, Evans HC, Hughes D, Humber R, Hywel-Jones N, Li Z, Luangsa-ard JJ, Rehner SA, Sanjuan T, Sato H, Shrestha B, Sung GH, Yao YJ, Zare R, Spatafora JW. Phylogenetic-based nomenclatural proposals for Ophiocordycipitaceae (Hypocreales) with new combinations in Tolypocladium. IMA Fungus 2014; 5:121-34. [PMID: 25083412 PMCID: PMC4107890 DOI: 10.5598/imafungus.2014.05.01.12] [Citation(s) in RCA: 119] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2014] [Accepted: 06/02/2014] [Indexed: 12/04/2022] Open
Abstract
Ophiocordycipitaceae is a diverse family comprising ecologically, economically, medicinally, and culturally important fungi. The family was recognized due to the polyphyly of the genus Cordyceps and the broad diversity of the mostly arthropod-pathogenic lineages of Hypocreales. The other two cordyceps-like families, Cordycipitaceae and Clavicipitaceae, will be revised taxonomically elsewhere. Historically, many species were placed in Cordyceps, but other genera have been described in this family as well, including several based on anamorphic features. Currently there are 24 generic names in use across both asexual and sexual life stages for species of Ophiocordycipitaceae. To reflect changes in Art. 59 in the International Code of Nomenclature for algae, fungi, and plants (ICN), we propose to protect and to suppress names within Ophiocordycipitaceae, and to present taxonomic revisions in the genus Tolypocladium, based on rigorous and extensively sampled molecular phylogenetic analyses. When approaching this task, we considered the principles of priority, monophyly, minimizing taxonomic revisions, and the practical utility of these fungi within the wider biological research community.
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Affiliation(s)
- C. Alisha Quandt
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
| | - Ryan M. Kepler
- USDA-ARS, Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, USA
| | - Walter Gams
- Formerly CBS-KNAW, Fungal Biodiversity Centre, Utrecht, The Netherlands
| | - João P. M. Araújo
- Department of Biology, Pennsylvania State University, University Park, State College, PA 16802, USA
| | - Sayaka Ban
- Biological Resource Center, National Institute of Technology and Evaluation 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
| | - Harry C. Evans
- CAB International, E-UK Centre, Egham, Surrey TW20 9TY, UK
| | - David Hughes
- Department of Biology, Pennsylvania State University, University Park, State College, PA 16802, USA
- Department of Entomology, Center for Infectious Disease Dynamics, Pennsylvania State University, University Park, State College, PA 16802, USA
| | - Richard Humber
- USDA-ARS Biological Integrated Pest Management Research, Robert W. Holley Center for Agriculture and Health, Ithaca, NY14853, USA
| | | | - Zengzhi Li
- Department of Forestry, Anhui Agricultural University, Hefei, Anhui 230036, China
| | - J. Jennifer Luangsa-ard
- Microbe Interaction Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Rd, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - Stephen A. Rehner
- USDA-ARS, Systematic Mycology and Microbiology Laboratory, Beltsville, MD 20705, USA
| | - Tatiana Sanjuan
- Laboratorio de Taxonomía y Ecología de Hongos, Instituto de Biología, Facultad de Ciencias Naturales, Universidad de Antioquia, Medellín, Colombia and Laboratorio de micología y fitopatología, Departamento Ciencias Biológicas, Universidad de los Andes, Bogotá, Colombia
| | - Hiroki Sato
- Department of Forest Entomology, Forestry and Forest Products Research Institute, 1 Matsunosato, Tsukuba, Ibaraki 305, Japan
| | - Bhushan Shrestha
- Institute of Life Science and Biotechnology, Sungkyunkwan University, Suwon 440-746, Korea
| | - Gi-Ho Sung
- Mushroom Research Division, National Institute of Horticultural and Herbal Science, Rural Development Administration, Eumseong 369-873, Korea
| | - Yi-Jian Yao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Rasoul Zare
- Department of Botany, Iranian Research Institute of Plant Protection, P.O. Box 1454, Tehran 19395, Iran
| | - Joseph W. Spatafora
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
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Relationships within Lentinus subg. Lentinus (Polyporales, Agaricomycetes), with emphasis on sects. Lentinus and Tigrini. Mycol Prog 2010. [DOI: 10.1007/s11557-010-0711-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Ravash R, Shiran B, Alavi AA, Bayat F, Rajaee S, Zervakis GI. Genetic variability and molecular phylogeny of Pleurotus eryngii species-complex isolates from Iran, and notes on the systematics of Asiatic populations. Mycol Prog 2009. [DOI: 10.1007/s11557-009-0624-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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11
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Rosselló JA, Lázaro A, Cosín R, Molins A. A Phylogeographic Split in Buxus balearica (Buxaceae) as Evidenced by Nuclear Ribosomal Markers: When ITS Paralogues Are Welcome. J Mol Evol 2007; 64:143-57. [PMID: 17211551 DOI: 10.1007/s00239-005-0113-4] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2005] [Accepted: 08/31/2006] [Indexed: 10/23/2022]
Abstract
Sequences from the ribosomal nuclear internal transcribed spacers (ITS) have been widely used to infer evolutionary hypotheses across a broad range of living organisms. Intraspecific sequence variation is assumed to be absent or negliable in most species, but few detailed studies have been conducted to assess the apportionment of ITS sequence variation within and between plant populations. Buxus balearica was chosen as a model species to assess the levels of infraspecific and intragenomic ITS variation in rare and endangered species occurring in disjunct populations around the Mediterranean basin. Intragenomic polymorphic sites were detected for western and eastern accessions of B. balearica and in two accessions of the sister species B. sempervirens. Overall, 19 different ribotypes were found in B. balearica after sequencing 48 clones, whereas 15 ribotypes were detected in 19 clones of B. sempervirens. The integrity and secondary structure stability of the ribosomal sequences suggest that they are not pseudogenes. The high number of ribotypes recovered through cloning suggested that some sequences could be chimeric or generated in vivo by partial homogenization through gene conversion or unequal crossing-over. Average sequence divergence among B. balearica clones was 0.768%, and the most divergent sequences differed by 1.62%. Available evidence does not suggest that B. balearica paralogues have been obtained from other extant Buxus species through interspecific hybridization. The presence of several ribosomal sequences in box implies that the molecular forces driving the concerted evolution of this multigene family are not fully operational in this genus. Phylogenetic analyses of cloned ITS sequences from B. balearica displayed very poor resolution and only two clades received moderate bootstrap support. Despite the marked intragenomic sequence divergence found, ribosomal data suggest a clear phylogeographic split in B. balearica between western and eastern accessions. The distinct, nonchimeric sequences that are postulated as being present in each biogeographic group suggest that box populations from Anatolia (eastern Mediterranean) are relict.
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Affiliation(s)
- Josep A Rosselló
- Jardí Botánic, Universidad de Valencia, c/ Quart 80, E-46008, Valencia, Spain.
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13
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Phylogenetic analyses of the Lyophylleae (Agaricales, Basidiomycota) based on nuclear and mitochondrial rDNA sequences. ACTA ACUST UNITED AC 2002. [DOI: 10.1017/s095375620200641x] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Catherine Aime M, Hofstetter V, Verduin SJW, Larsson E, Baroni TJ, Greg Thorn R, Jacobsson S, Clémençon H, Miller OK. One hundred and seventeen clades of euagarics. Mol Phylogenet Evol 2002; 23:357-400. [PMID: 12099793 DOI: 10.1016/s1055-7903(02)00027-1] [Citation(s) in RCA: 357] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
This study provides a first broad systematic treatment of the euagarics as they have recently emerged in phylogenetic systematics. The sample consists of 877 homobasidiomycete taxa and includes approximately one tenth (ca. 700 species) of the known number of species of gilled mushrooms that were traditionally classified in the order Agaricales. About 1000 nucleotide sequences at the 5(') end of the nuclear large ribosomal subunit gene (nLSU) were produced for each taxon. Phylogenetic analyses of nucleotide sequence data employed unequally weighted parsimony and bootstrap methods. Clades revealed by the analyses support the recognition of eight major groups of homobasidiomycetes that cut across traditional lines of classification, in agreement with other recent phylogenetic studies. Gilled fungi comprise the majority of species in the euagarics clade. However, the recognition of a monophyletic euagarics results in the exclusion from the clade of several groups of gilled fungi that have been traditionally classified in the Agaricales and necessitates the inclusion of several clavaroid, poroid, secotioid, gasteroid, and reduced forms that were traditionally classified in other basidiomycete orders. A total of 117 monophyletic groups (clades) of euagarics can be recognized on the basis on nLSU phylogeny. Though many clades correspond to traditional taxonomic groups, many do not. Newly discovered phylogenetic affinities include for instance relationships of the true puffballs (Lycoperdales) with Agaricaceae, of Panellus and the poroid fungi Dictyopanus and Favolaschia with Mycena, and of the reduced fungus Caripia with Gymnopus. Several clades are best supported by ecological, biochemical, or trophic habits rather than by morphological similarities.
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