1
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Othman AM, Sabry YM, Khalil D, Saadany B, Bourouina T. A disposable optofluidic micro-transmission cell with tailorable length for Fourier-transform infrared spectroscopy of biological fluids. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:262-268. [PMID: 38111305 DOI: 10.1039/d3ay01710a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2023]
Abstract
Mid-infrared Fourier-transform infrared (FT-IR) spectroscopy of liquid biological samples is limited by the high absorption of water in this spectral range, which makes conventional transmission cuvettes unsuitable as their centimeter-scale length is already too big. The most common alternative relies on the use of attenuated total reflection (ATR) accessories, which provide a small interaction path length for light along the interface between the analyte and the expensive ATR crystals. In this work, we address this issue by proposing a disposable and low-cost micro-transmission cell. Its construction relies on a simple technique, which consists of dispersing plastic spherical microparticles in a liquid sample before dispensing it between two pieces of silicon assembled one onto the other and acting as windows for the cell. Consequently, the microparticles act as a spacer of very precise height in-between the two silicon windows. This technique allows easy construction of infrared absorption cells with near-optimum optical interaction path length just by selecting the most appropriate particle size. The concept is demonstrated by measuring the concentration of glucose in aqueous solutions using microspheres of diameter 20 μm then 40 μm and analyzing the corresponding glucose absorption peaks in the wavenumber range 950-1200 cm-1. The performance is compared to that of standard ATR spectroscopy of the same samples. This resulted in a root-mean-square error of cross-validation (RMSECV) of 58.8 mg dl-1 as obtained for transmission measurements by partial least squares (PLS) regression, which is comparable to the RMSECV of 53 mg dl-1 for single-reflection diamond ATR measurements.
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Affiliation(s)
- Ahmed M Othman
- Université Gustave Eiffel, ESYCOM CNRS UMR 9007, Noisy-le-Grand ESIEE Paris, 93162, France.
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo, Egypt
| | - Yasser M Sabry
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo, Egypt
- Faculty of Engineering, Ain-Shams University, 1 Elsarayat St. Abbassia, Cairo, Egypt
| | - Diaa Khalil
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo, Egypt
- Faculty of Engineering, Ain-Shams University, 1 Elsarayat St. Abbassia, Cairo, Egypt
| | - Bassam Saadany
- Si-Ware Systems, 3 Khalid Ibn Al-Waleed St., Heliopolis, Cairo, Egypt
| | - Tarik Bourouina
- Université Gustave Eiffel, ESYCOM CNRS UMR 9007, Noisy-le-Grand ESIEE Paris, 93162, France.
- CINTRA, IRL 3288 CNRS-NTU-THALES, Nanyang Technological University, 637553, Singapore
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2
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Flaman GT, Boyle ND, Vermelle C, Morhart TA, Ramaswami B, Read S, Rosendahl SM, Wells G, Newman LP, Atkinson N, Achenbach S, Burgess IJ. Chemical Imaging of Mass Transport Near the No-Slip Interface of a Microfluidic Device using Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy. Anal Chem 2023; 95:4940-4949. [PMID: 36880970 DOI: 10.1021/acs.analchem.2c04880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
Mass transport in geometrically confined environments is fundamental to microfluidic applications. Measuring the distribution of chemical species on flow requires the use of spatially resolved analytical tools compatible with microfluidic materials and designs. Here, the implementation of an attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) imaging (macro-ATR) approach for chemical mapping of species in microfluidic devices is described. The imaging method is configurable between a large field of view, single-frame imaging, and the use of image stitching to build composite chemical maps. Macro-ATR is used to quantify transverse diffusion in the laminar streams of coflowing fluids in dedicated microfluidic test devices. It is demonstrated that the ATR evanescent wave, which primarily probes the fluid within ∼500 nm of the channel surface, provides accurate quantification of the spatial distribution of species in the entire microfluidic device cross section. This is the case when flow and channel conditions promote vertical concentration contours in the channel as verified by three-dimensional numeric simulations of mass transport. Furthermore, the validity of treating the mass transport problem in a simplified and faster approach using reduced dimensionality numeric simulations is described. Simplified one-dimensional simulations, for the specific parameters used herein, overestimate diffusion coefficients by a factor of approximately 2, whereas full three-dimensional simulations accurately agree with experimental results.
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Affiliation(s)
- Grace T Flaman
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
| | - Nicole D Boyle
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
| | - Cyprien Vermelle
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Tyler A Morhart
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 2V3 Canada
| | - Bdhanya Ramaswami
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
| | - Stuart Read
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 2V3 Canada
| | | | - Garth Wells
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 2V3 Canada
| | - Liam P Newman
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Noah Atkinson
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Sven Achenbach
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Ian J Burgess
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
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3
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Münch AS, Simon F, Merlitz H, Uhlmann P. Investigation of an oleophobic-hydrophilic polymer brush with switchable wettability for easy-to-clean coatings. Eur Polym J 2022. [DOI: 10.1016/j.eurpolymj.2022.111629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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4
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Fomina PS, Proskurnin MA, Mizaikoff B, Volkov DS. Infrared Spectroscopy in Aqueous Solutions: Capabilities and Challenges. Crit Rev Anal Chem 2022; 53:1748-1765. [PMID: 35212600 DOI: 10.1080/10408347.2022.2041390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Fourier-transform infrared (FTIR) spectroscopy provides rapid, reliable, quantitative, and qualitative analysis of samples in different aggregation states, i.e., gases, thin films, solids, liquids, etc. However, when analyzing aqueous solutions, particular issues associated with the rather pronounced IR absorption characteristics of water appear to interfere with the solute determination. In this review, Fourier-transform infrared spectroscopic techniques and their analytical capabilities for analyzing aqueous solutions are reviewed, and highlight examples are discussed.
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Affiliation(s)
- Polina S Fomina
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Ulm, Germany
| | | | - Boris Mizaikoff
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Ulm, Germany
- Hahn-Schickard, Institute for Microanalysis Systems, Ulm, Germany
| | - Dmitry S Volkov
- Department of Chemistry, Lomonosov Moscow State University, Moscow, Russia
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5
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Pérez-Guaita D, Richardson Z, Quintás G, Kuligowski J, Bedolla DE, Byrne HJ, Wood B. ATR-Spin: an open-source 3D printed device for direct cytocentrifugation onto attenuated total reflectance crystals. LAB ON A CHIP 2021; 21:4743-4748. [PMID: 34822714 DOI: 10.1039/d1lc00813g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Infrared spectroscopy (IR) enables the direct and rapid characterization of cells at the molecular level. Achieving a rapid and consistent cell preparation is critical for the development of point-of-care diagnostics for cell analysis. Here we introduce an open-source, 3D printed device for integrating the isolation, preconcentration, and measurement of attenuated total reflectance IR spectra of cells from biofluids. The tool comprises a disposable card for cytocentrifugation, equipped with magnets, which allows reproducible integration into the pathlength of the IR spectrophotometer. Preliminary results using cell culture media containing A549 cells indicate that this system enables a qualitative and quantitative characterization of cells down to 10 cells μL-1 by using a single and cost-effective device and within a few minutes.
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Affiliation(s)
- David Pérez-Guaita
- Department of Analytical Chemistry, University of Valencia, Burjassot, Spain.
- FOCAS Research Institute, Technological University Dublin, City Campus, Dublin 8, Ireland
- Centre for Biospectroscopy and School of Chemistry, Monash University, Clayton Campus, 3800, Victoria, Australia
| | - Zack Richardson
- Centre for Biospectroscopy and School of Chemistry, Monash University, Clayton Campus, 3800, Victoria, Australia
| | | | - Julia Kuligowski
- Neonatal Research Group, Health Research Institute La Fe, Valencia, Spain
| | - Diana E Bedolla
- Centre for Biospectroscopy and School of Chemistry, Monash University, Clayton Campus, 3800, Victoria, Australia
| | - Hugh J Byrne
- FOCAS Research Institute, Technological University Dublin, City Campus, Dublin 8, Ireland
| | - Bayden Wood
- Centre for Biospectroscopy and School of Chemistry, Monash University, Clayton Campus, 3800, Victoria, Australia
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6
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Theakstone AG, Rinaldi C, Butler HJ, Cameron JM, Confield LR, Rutherford SH, Sala A, Sangamnerkar S, Baker MJ. Fourier‐transform infrared spectroscopy of biofluids: A practical approach. TRANSLATIONAL BIOPHOTONICS 2021. [DOI: 10.1002/tbio.202000025] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Affiliation(s)
- Ashton G. Theakstone
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
| | - Christopher Rinaldi
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
| | | | | | - Lily Rose Confield
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
- CDT Medical Devices, Department of Biomedical Engineering Wolfson Centre Glasgow UK
| | - Samantha H. Rutherford
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
| | - Alexandra Sala
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
- ClinSpec Diagnostics Ltd, Royal College Building Glasgow UK
| | - Sayali Sangamnerkar
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
| | - Matthew J. Baker
- WestCHEM, Department of Pure and Applied Chemistry Technology and Innovation Centre Glasgow UK
- ClinSpec Diagnostics Ltd, Royal College Building Glasgow UK
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7
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Cameron JM, Butler HJ, Smith BR, Hegarty MG, Jenkinson MD, Syed K, Brennan PM, Ashton K, Dawson T, Palmer DS, Baker MJ. Developing infrared spectroscopic detection for stratifying brain tumour patients: glioblastoma multiforme vs. lymphoma. Analyst 2020; 144:6736-6750. [PMID: 31612875 DOI: 10.1039/c9an01731c] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Over a third of brain tumour patients visit their general practitioner more than five times prior to diagnosis in the UK, leading to 62% of patients being diagnosed as emergency presentations. Unfortunately, symptoms are non-specific to brain tumours, and the majority of these patients complain of headaches on multiple occasions before being referred to a neurologist. As there are currently no methods in place for the early detection of brain cancer, the affected patients' average life expectancy is reduced by 20 years. These statistics indicate that the current pathway is ineffective, and there is a vast need for a rapid diagnostic test. Attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy is sensitive to the hallmarks of cancer, as it analyses the full range of macromolecular classes. The combination of serum spectroscopy and advanced data analysis has previously been shown to rapidly and objectively distinguish brain tumour severity. Recently, a novel high-throughput ATR accessory has been developed, which could be cost-effective to the National Health Service in the UK, and valuable for clinical translation. In this study, 765 blood serum samples have been collected from healthy controls and patients diagnosed with various types of brain cancer, contributing to one of the largest spectroscopic studies to date. Three robust machine learning techniques - random forest, partial least squares-discriminant analysis and support vector machine - have all provided promising results. The novel high-throughput technology has been validated by separating brain cancer and non-cancer with balanced accuracies of 90% which is comparable to the traditional fixed diamond crystal methodology. Furthermore, the differentiation of brain tumour type could be useful for neurologists, as some are difficult to distinguish through medical imaging alone. For example, the highly aggressive glioblastoma multiforme and primary cerebral lymphoma can appear similar on magnetic resonance imaging (MRI) scans, thus are often misdiagnosed. Here, we report the ability of infrared spectroscopy to distinguish between glioblastoma and lymphoma patients, at a sensitivity and specificity of 90.1% and 86.3%, respectively. A reliable serum diagnostic test could avoid the need for surgery and speed up time to definitive chemotherapy and radiotherapy.
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Affiliation(s)
- James M Cameron
- WestCHEM, Department of Pure and Applied Chemistry, Technology and Innovation Centre, University of Strathclyde, 99 George St, Glasgow, G1 1RD, UK.
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8
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Baumgartner B, Freitag S, Lendl B. 3D Printing for Low-Cost and Versatile Attenuated Total Reflection Infrared Spectroscopy. Anal Chem 2020; 92:4736-4741. [DOI: 10.1021/acs.analchem.9b04043] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Bettina Baumgartner
- Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/E164, 1060 Wien, Austria
| | - Stephan Freitag
- Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/E164, 1060 Wien, Austria
| | - Bernhard Lendl
- Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/E164, 1060 Wien, Austria
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9
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Flemming P, Müller M, Fery A, Münch AS, Uhlmann P. Mechanistic Investigation of the Counterion-Induced UCST Behavior of Poly(N,N-dimethylaminoethyl methacrylate) Polymer Brushes. Macromolecules 2020. [DOI: 10.1021/acs.macromol.9b02666] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Patricia Flemming
- Leibniz-Institut für Polymerforschung Dresden e.V, Hohe Straße 6, 01069 Dresden, Germany
- Technische Universität Dresden, 01062 Dresden, Germany
| | - Martin Müller
- Leibniz-Institut für Polymerforschung Dresden e.V, Hohe Straße 6, 01069 Dresden, Germany
- Technische Universität Dresden, 01062 Dresden, Germany
| | - Andreas Fery
- Leibniz-Institut für Polymerforschung Dresden e.V, Hohe Straße 6, 01069 Dresden, Germany
- Technische Universität Dresden, 01062 Dresden, Germany
| | - Alexander S. Münch
- Leibniz-Institut für Polymerforschung Dresden e.V, Hohe Straße 6, 01069 Dresden, Germany
| | - Petra Uhlmann
- Leibniz-Institut für Polymerforschung Dresden e.V, Hohe Straße 6, 01069 Dresden, Germany
- University of Nebraska-Lincoln, 68588 Lincoln, Nebraska, United States
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10
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Butler HJ, Brennan PM, Cameron JM, Finlayson D, Hegarty MG, Jenkinson MD, Palmer DS, Smith BR, Baker MJ. Development of high-throughput ATR-FTIR technology for rapid triage of brain cancer. Nat Commun 2019; 10:4501. [PMID: 31594931 PMCID: PMC6783469 DOI: 10.1038/s41467-019-12527-5] [Citation(s) in RCA: 96] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Accepted: 09/16/2019] [Indexed: 12/22/2022] Open
Abstract
Non-specific symptoms, as well as the lack of a cost-effective test to triage patients in primary care, has resulted in increased time-to-diagnosis and a poor prognosis for brain cancer patients. A rapid, cost-effective, triage test could significantly improve this patient pathway. A blood test using attenuated total reflection (ATR)-Fourier transform infrared (FTIR) spectroscopy for the detection of brain cancer, alongside machine learning technology, is advancing towards clinical translation. However, whilst the methodology is simple and does not require extensive sample preparation, the throughput of such an approach is limited. Here we describe the development of instrumentation for the analysis of serum that is able to differentiate cancer and control patients at a sensitivity and specificity of 93.2% and 92.8%. Furthermore, preliminary data from the first prospective clinical validation study of its kind are presented, demonstrating how this innovative technology can triage patients and allow rapid access to imaging.
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Affiliation(s)
- Holly J Butler
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK. .,ClinSpec Diagnostics Limited, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK.
| | - Paul M Brennan
- Translational Neurosurgery, Department of Clinical Neurosciences, Western General Hospital, Edinburgh, EH4 2XU, UK
| | - James M Cameron
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK
| | - Duncan Finlayson
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK
| | - Mark G Hegarty
- ClinSpec Diagnostics Limited, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK
| | - Michael D Jenkinson
- Institute of Translational Medicine, University of Liverpool & The Walton Centre NHS Foundation Trust, Lower Lane, Fazakerley, Liverpool, L9 7LJ, UK
| | - David S Palmer
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK.,ClinSpec Diagnostics Limited, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK
| | - Benjamin R Smith
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK
| | - Matthew J Baker
- WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK. .,ClinSpec Diagnostics Limited, University of Strathclyde, Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK.
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11
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Abstract
Fourier transform-infrared spectroscopy (FT-IR) represents an attractive molecular diagnostic modality for translation to the clinic, where comprehensive chemical profiling of biological samples may revolutionize a myriad of pathways in clinical settings. Principally, FT-IR provides a rapid, cost-effective platform to obtain a molecular fingerprint of clinical samples based on vibrational transitions of chemical bonds upon interaction with infrared light. To date, considerable research activities have demonstrated competitive to superior performance of FT-IR strategies in comparison to conventional techniques, with particular promise for earlier, accessible disease diagnostics, thereby improving patient outcomes. However, amidst the changing healthcare landscape in times of aging populations and increased prevalence of cancer and chronic disease, routine adoption of FT-IR within clinical laboratories has remained elusive. Hence, this perspective shall outline the significant clinical potential of FT-IR diagnostics and subsequently address current barriers to translation from the perspective of all stakeholders, in the context of biofluid, histopathology, cytology, microbiology, and biomarker discovery frameworks. Thereafter, future perspectives of FT-IR for healthcare will be discussed, with consideration of recent technological advances that may facilitate future clinical translation.
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Affiliation(s)
- Duncan Finlayson
- Centre for Doctoral Training in Medical Devices and Health Technologies, Department of Biomedical Engineering , University of Strathclyde , Wolfson Centre, 106 Rottenrow , Glasgow G4 0NW , U.K.,WestCHEM , Department of Pure and Applied Chemistry , Technology and Innovation Centre, 99 George Street , Glasgow G1 1RD , U.K
| | - Christopher Rinaldi
- Centre for Doctoral Training in Medical Devices and Health Technologies, Department of Biomedical Engineering , University of Strathclyde , Wolfson Centre, 106 Rottenrow , Glasgow G4 0NW , U.K.,WestCHEM , Department of Pure and Applied Chemistry , Technology and Innovation Centre, 99 George Street , Glasgow G1 1RD , U.K
| | - Matthew J Baker
- WestCHEM , Department of Pure and Applied Chemistry , Technology and Innovation Centre, 99 George Street , Glasgow G1 1RD , U.K.,ClinSpec Diagnostics Ltd. , Technology and Innovation Centre, 99 George Street , Glasgow G11RD , U.K
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12
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Baumgartner B, Hayden J, Loizillon J, Steinbacher S, Grosso D, Lendl B. Pore Size-Dependent Structure of Confined Water in Mesoporous Silica Films from Water Adsorption/Desorption Using ATR-FTIR Spectroscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:11986-11994. [PMID: 31487193 DOI: 10.1021/acs.langmuir.9b01435] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The local structure of water on chemically and structurally different surfaces is a subject of ongoing research. In particular, confined spaces as found in mesoporous silica have a pronounced effect on the interplay between the adsorbate-adsorbate and adsorbate-surface interactions. Mid-infrared spectroscopy is ideally suited to quantitatively and qualitatively study such systems as the probed molecular vibrations are highly sensitive to intermolecular interactions. Here, the quantity and structure of water adsorbed from the gas phase into silica mesopores at different water vapor pressures was monitored using mid-infrared attenuated total reflection (ATR) spectroscopy. Germanium ATR crystals were coated with different mesoporous silica films prepared by evaporation-induced self-assembly. Quantitative analysis of the water bending vibration at 1640 cm-1 at varying vapor pressure allows for retrieving porosity and pore size distribution of the mesoporous films. The results were in excellent agreement with those obtained from ellipsometric porosimetry. In addition, different degrees of hydrogen bonding of water as reflected in the band position and shape of the stretching vibrations (3000-3800 cm-1) were analyzed and attributed to high-density, unordered bulk, low-density, and surface-induced ordered water. Thereby, the progression of surface-induced ordered water and bulk water as a function of water vapor pressure was studied for different pore sizes. Small pores of 5 nm diameter showed a number of two-ordered monolayers, whereas for pores >12 nm diameter, the number of ordered monolayers is significantly larger and agrees with the number observed on planar SiO2 surfaces.
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Affiliation(s)
- Bettina Baumgartner
- Research Division of Environmental Analytics, Process Analytics and Sensors, Institute of Chemical Technologies and Analytics , Technische Universität Wien , Getreidemarkt 9 , 1060 Vienna , Austria
| | - Jakob Hayden
- Research Division of Environmental Analytics, Process Analytics and Sensors, Institute of Chemical Technologies and Analytics , Technische Universität Wien , Getreidemarkt 9 , 1060 Vienna , Austria
| | - Jérôme Loizillon
- NOVA Team, Institut Matériaux Microélectronique et Nanosciences de Provence, (IM2NP)-UMR CNRS 7334, Aix-Marseille Université, Faculté des Sciences de Saint Jérôme , 13397 Cedex 20 Marseille , France
| | - Sophia Steinbacher
- Research Division of Environmental Analytics, Process Analytics and Sensors, Institute of Chemical Technologies and Analytics , Technische Universität Wien , Getreidemarkt 9 , 1060 Vienna , Austria
| | - David Grosso
- NOVA Team, Institut Matériaux Microélectronique et Nanosciences de Provence, (IM2NP)-UMR CNRS 7334, Aix-Marseille Université, Faculté des Sciences de Saint Jérôme , 13397 Cedex 20 Marseille , France
| | - Bernhard Lendl
- Research Division of Environmental Analytics, Process Analytics and Sensors, Institute of Chemical Technologies and Analytics , Technische Universität Wien , Getreidemarkt 9 , 1060 Vienna , Austria
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13
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Kas R, Ayemoba O, Firet NJ, Middelkoop J, Smith WA, Cuesta A. In-Situ Infrared Spectroscopy Applied to the Study of the Electrocatalytic Reduction of CO 2 : Theory, Practice and Challenges. Chemphyschem 2019; 20:2904-2925. [PMID: 31441195 DOI: 10.1002/cphc.201900533] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Revised: 08/22/2019] [Indexed: 11/11/2022]
Abstract
The field of electrochemical CO2 conversion is undergoing significant growth in terms of the number of publications and worldwide research groups involved. Despite improvements of the catalytic performance, the complex reaction mechanisms and solution chemistry of CO2 have resulted in a considerable amount of discrepancies between theoretical and experimental studies. A clear identification of the reaction mechanism and the catalytic sites are of key importance in order to allow for a qualitative breakthrough and, from an experimental perspective, calls for the use of in-situ or operando spectroscopic techniques. In-situ infrared spectroscopy can provide information on the nature of intermediate species and products in real time and, in some cases, with relatively high time resolution. In this contribution, we review key theoretical aspects of infrared reflection spectroscopy, followed by considerations of practical implementation. Finally, recent applications to the electrocatalytic reduction of CO2 are reviewed, including challenges associated with the detection of reaction intermediates.
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Affiliation(s)
- Recep Kas
- Department of Chemical Engineering, Delft University of Technology, 2629 HZ, Delft, The Netherlands
| | - Onagie Ayemoba
- School of Natural and Computing Sciences, University of Aberdeen, Aberdeen, AB24 3UE, Scotland, UK
| | - Nienke J Firet
- Department of Chemical Engineering, Delft University of Technology, 2629 HZ, Delft, The Netherlands
| | - Joost Middelkoop
- Department of Chemical Engineering, Delft University of Technology, 2629 HZ, Delft, The Netherlands
| | - Wilson A Smith
- Department of Chemical Engineering, Delft University of Technology, 2629 HZ, Delft, The Netherlands
| | - Angel Cuesta
- School of Natural and Computing Sciences, University of Aberdeen, Aberdeen, AB24 3UE, Scotland, UK
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14
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Morhart TA, Read S, Wells G, Jacobs M, Rosendahl SM, Achenbach S, Burgess IJ. Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) Spectromicroscopy Using Synchrotron Radiation and Micromachined Silicon Wafers for Microfluidic Applications. APPLIED SPECTROSCOPY 2018; 72:1781-1789. [PMID: 29893584 DOI: 10.1177/0003702818785640] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
A custom-designed optical configuration compatible with the use of micromachined multigroove internal reflection elements (μ-groove IREs) for attenuated total reflectance Fourier transform infrared (ATR FT-IR) spectroscopy and imaging applications in microfluidic devices is described. The μ-groove IREs consist of several face-angled grooves etched into a single, monolithic silicon chip. The optical configuration permits individual grooves to be addressed by focusing synchrotron sourced IR light through a 150 µm pinhole aperture, restricting the beam spot size to a dimension smaller than that of the groove walls. The effective beam spot diameter at the ATR sampling plane is determined through deconvolution of the measured detector response and found to be 70 µm. The μ-groove IREs are highly compatible with standard photolithographic techniques as demonstrated by printing a 400 µm wide channel in an SU-8 film spin-coated on the IRE surface. Attenuated total reflection FT-IR mapping as a function of sample position across the channel illustrates the potential application of this approach for rapid prototyping of microfluidic devices.
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Affiliation(s)
- Tyler A Morhart
- Department of Chemistry, University of Saskatchewan, Saskatoon, SK, Canada
| | - Stuart Read
- Canadian Light Source, Saskatoon, SK, Canada
| | - Garth Wells
- Canadian Light Source, Saskatoon, SK, Canada
| | | | | | - Sven Achenbach
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada
| | - Ian J Burgess
- Department of Chemistry, University of Saskatchewan, Saskatoon, SK, Canada
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15
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Sperling BA, Kalanyan B. Evaluation of Silicon Wafer-Based Internal Reflection Elements for Use with in Situ Fourier Transform Infrared (FT-IR) Spectroscopy. APPLIED SPECTROSCOPY 2018; 72:1396-1403. [PMID: 29756992 PMCID: PMC6349246 DOI: 10.1177/0003702818779799] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Silicon wafer-based internal reflection elements (IREs) present many practical advantages over the prisms conventionally used for attenuated total reflection (ATR) spectroscopy in the infrared. We examine two methods of using minimally prepared IREs that have appeared in the literature, edge-coupled (EC) and prism-coupled (PC), in conjunction with a liquid flow cell. Polarization measurements show that radiation entering the PC-IRE becomes depolarized due to stress-induced birefringence, and transmission through the edge of the EC-IRE also affects the polarization state. Quantification of the noise and a calibration using a series of sodium acetate solutions show the sensitivity of the PC-IRE outweighs the lower noise obtainable with the EC-IRE.
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16
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Perez-Guaita D, Marzec KM, Hudson A, Evans C, Chernenko T, Matthäus C, Miljkovic M, Diem M, Heraud P, Richards JS, Andrew D, Anderson DA, Doerig C, Garcia-Bustos J, McNaughton D, Wood BR. Parasites under the Spotlight: Applications of Vibrational Spectroscopy to Malaria Research. Chem Rev 2018; 118:5330-5358. [DOI: 10.1021/acs.chemrev.7b00661] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- David Perez-Guaita
- Centre for Biospectroscopy, School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | - Katarzyna M. Marzec
- Jagiellonian Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzyńskiego 14, Kraków 30-348, Poland
- Center for Medical Genomics (OMICRON), Jagiellonian University, Kopernika 7C, Krakow 31-034, Poland
| | - Andrew Hudson
- Department of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, United Kingdom
| | - Corey Evans
- Department of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, United Kingdom
| | - Tatyana Chernenko
- Becton Dickinson and Company, 2350 Qume Drive, San Jose, California 95131, United States
| | - Christian Matthäus
- Leibniz Institute of Photonic Technology, Albert Einstein Straße 9, Jena 07745, Germany
- Institute of Physical Chemistry and Abbe School of Photonics, Friedrich Schiller University, Helmholtz Weg 4, Jena 07743, Germany
| | - Milos Miljkovic
- Department of Mechanical Engineering, Tufts University, 200 Boston Avenue, Medford, Massachusetts 02155, United States
| | - Max Diem
- Laboratory for Spectral Diagnosis (LSpD), Department of Chemistry and Chemical Biology, Northeastern University, 316 Hurtig Hall, 360 Huntington Avenue, Boston, Massachusetts 02155, United States
| | - Philip Heraud
- Centre for Biospectroscopy, School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | - Jack S. Richards
- Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria 3004, Australia
- Department of Microbiology, Monash University, Clayton, Victoria 3800, Australia
- Department of Medicine, University of Melbourne, Parkville, Victoria 3050, Australia
| | - Dean Andrew
- Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria 3004, Australia
| | - David A. Anderson
- Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria 3004, Australia
| | - Christian Doerig
- Department of Microbiology and the Biomedical Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Wellington Road, Clayton, Victoria 3800, Australia
| | - Jose Garcia-Bustos
- Department of Microbiology and the Biomedical Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Wellington Road, Clayton, Victoria 3800, Australia
| | - Don McNaughton
- Centre for Biospectroscopy, School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | - Bayden R. Wood
- Centre for Biospectroscopy, School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
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17
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Münch AS, Wölk M, Malanin M, Eichhorn KJ, Simon F, Uhlmann P. Smart functional polymer coatings for paper with anti-fouling properties. J Mater Chem B 2018; 6:830-843. [DOI: 10.1039/c7tb02886e] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Preparation of functionalized cellulose films on SiO2 to introduce protein repellent properties evaluated by spectroscopic in situ ellipsometry.
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Affiliation(s)
| | - Michele Wölk
- Leibniz-Institut für Polymerforschung Dresden e.V
- D-01069 Dresden
- Germany
| | - Mikhail Malanin
- Leibniz-Institut für Polymerforschung Dresden e.V
- D-01069 Dresden
- Germany
| | | | - Frank Simon
- Leibniz-Institut für Polymerforschung Dresden e.V
- D-01069 Dresden
- Germany
| | - Petra Uhlmann
- Leibniz-Institut für Polymerforschung Dresden e.V
- D-01069 Dresden
- Germany
- Department of Chemistry
- Hamilton Hall
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18
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Morhart TA, Unni B, Lardner MJ, Burgess IJ. Electrochemical ATR-SEIRAS Using Low-Cost, Micromachined Si Wafers. Anal Chem 2017; 89:11818-11824. [DOI: 10.1021/acs.analchem.7b03509] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Tyler A. Morhart
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Bipinlal Unni
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Michael J. Lardner
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Ian J. Burgess
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
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19
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Karpov Y, Erdmann T, Stamm M, Lappan U, Guskova O, Malanin M, Raguzin I, Beryozkina T, Bakulev V, Günther F, Gemming S, Seifert G, Hambsch M, Mannsfeld S, Voit B, Kiriy A. Molecular Doping of a High Mobility Diketopyrrolopyrrole–Dithienylthieno[3,2-b]thiophene Donor–Acceptor Copolymer with F6TCNNQ. Macromolecules 2017. [DOI: 10.1021/acs.macromol.6b02452] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Yevhen Karpov
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Tim Erdmann
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Manfred Stamm
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Uwe Lappan
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Olga Guskova
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Mikhail Malanin
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Ivan Raguzin
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | | | - Vasiliy Bakulev
- Ural Federal University, Mira str.,
28, 620002 Yekaterinburg, Russia
| | - Florian Günther
- Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Sibylle Gemming
- Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden, Germany
- Institut
für Physik, Technische Universität, 09107 Chemnitz, Germany
| | | | | | | | - Brigitte Voit
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
| | - Anton Kiriy
- Leibniz-Institut für
Polymerforschung Dresden e.V., Hohe
Straße 6, 01069 Dresden, Germany
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20
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Le Corvec M, Allain C, Lardjane S, Cavey T, Turlin B, Fautrel A, Begriche K, Monbet V, Fromenty B, Leroyer P, Guggenbuhl P, Ropert M, Sire O, Loréal O. Mid-infrared fibre evanescent wave spectroscopy of serum allows fingerprinting of the hepatic metabolic status in mice. Analyst 2016; 141:6259-6269. [DOI: 10.1039/c6an00136j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Infrared spectroscopy from mice unveils a transition in the time course of steatosis.
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21
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Shi H, Lercher JA, Yu XY. Sailing into uncharted waters: recent advances in the in situ monitoring of catalytic processes in aqueous environments. Catal Sci Technol 2015. [DOI: 10.1039/c4cy01720j] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review presents recent advances inin situstudies of catalytic processes in the aqueous environment with an outlook of mesoscale imaging.
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Affiliation(s)
- Hui Shi
- Fundamental and Computer Sciences Directorate
- Pacific Northwest National Laboratory (PNNL)
- Richland
- USA
| | - Johannes A. Lercher
- Fundamental and Computer Sciences Directorate
- Pacific Northwest National Laboratory (PNNL)
- Richland
- USA
- Department of Chemistry
| | - Xiao-Ying Yu
- Fundamental and Computer Sciences Directorate
- Pacific Northwest National Laboratory (PNNL)
- Richland
- USA
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22
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Karabudak E. Micromachined silicon attenuated total reflectance infrared spectroscopy: An emerging detection method in micro/nanofluidics. Electrophoresis 2013; 35:236-44. [DOI: 10.1002/elps.201300248] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2013] [Revised: 09/30/2013] [Accepted: 10/01/2013] [Indexed: 11/10/2022]
Affiliation(s)
- Engin Karabudak
- Mesoscale Chemical Systems Group (MCS); MESA+ Institute for Nanotechnology; University of Twente; The Netherlands
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