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Calado MRC, Lage TC, André DAM, Calaza C, Marques C, Herrero C, Piteira J, Montelius L, Petrovykh DY, Diéguez L, Ainla A. Nanofluidic resistive pulse sensing for characterization of extracellular vesicles. LAB ON A CHIP 2024. [PMID: 39051540 DOI: 10.1039/d4lc00364k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
This paper describes the development, design and characterization of a resistive pulse sensing (RPS) system for the analysis of size distributions of extracellular vesicles (EVs). The system is based on microfluidic chips fabricated using soft-lithography and operated in pressure-driven mode. This fabrication approach provided reproducible pore dimensions and the best performing chip design enabled, without calibration, sizing of both 252 nm and 460 nm test particles within 8% of theoretically calculated values, based on the size specifications provided by suppliers. The number concentration measurement had higher variations and without calibration provided estimates within an order of magnitude, for sample concentrations across 4 orders of magnitude. The RPS chips could also measure successfully EVs and other biological nanoparticles in purified samples from cell culture media and human serum. A compact, fast and inexpensive RPS system based on this design could be an attractive alternative to current gold-standard techniques for routine characterization of EV samples.
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Affiliation(s)
| | - Teresa C Lage
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | - Daniel A M André
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | - Carlos Calaza
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | - Carlos Marques
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | - Carolina Herrero
- Translational Medical Oncology Group (Oncomet), Health Research Institute of Santiago de Compostela (IDIS), University Hospital of Santiago de Compostela (SERGAS), Santiago de Compostela, Spain
- Nasasbiotech, S.L., A Coruña, Spain
| | - João Piteira
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | - Lars Montelius
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | | | - Lorena Diéguez
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
| | - Alar Ainla
- International Iberian Nanotechnology Laboratory (INL), Braga, Portugal.
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2
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Tao C, Bai Y, Chen J, Lu J, Bi Y, Li J. Detection of Glutamate Decarboxylase Antibodies and Simultaneous Multi-Molecular Translocation Exploration by Glass Nanopores. BIOSENSORS 2024; 14:255. [PMID: 38785729 PMCID: PMC11118187 DOI: 10.3390/bios14050255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/09/2024] [Accepted: 05/14/2024] [Indexed: 05/25/2024]
Abstract
Glutamic acid decarboxylase antibody (GADAb) has emerged as a significant biomarker for clinical diagnosis and prognosis in type 1 diabetes (T1D). In this study, we investigated the potential utilization of glass capillary solid-state nanopores as a cost-effective and easily preparable platform for the detection of individual antigens, antibodies, and antigen-antibody complexes without necessitating any modifications to the nanopores. Our findings revealed notable characteristic variations in the translocation events of glutamic acid decarboxylase (GAD65) through nanopores under different voltage conditions, discovered that anomalous phenomenon of protein translocation events increasing with voltage may potentially be caused by the crowding of multiple proteins in the nanopores, and demonstrated that there are multiple components in the polyclonal antibodies (GADAb-poly). Furthermore, we achieved successful differentiation between GAD65, GADAb, and GADAb-GAD65 complexes. These results offer promising prospects for the development of a rapid and reliable GADAb detection method, which holds the potential to be applied in patient serum samples, thereby facilitating a label-free, cost-effective, and early diagnosis of type I diabetes.
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Affiliation(s)
- Chongxin Tao
- Key Laboratory of DGHD, MOE, School of Life Science and Technology, Southeast University, Nanjing 210096, China
| | - Yun Bai
- Key Laboratory of DGHD, MOE, School of Life Science and Technology, Southeast University, Nanjing 210096, China
| | - Jiang Chen
- Key Laboratory of DGHD, MOE, School of Life Science and Technology, Southeast University, Nanjing 210096, China
| | - Jing Lu
- Department of Endocrinology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing 210008, China
| | - Yan Bi
- Department of Endocrinology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing 210008, China
| | - Jian Li
- Key Laboratory of DGHD, MOE, School of Life Science and Technology, Southeast University, Nanjing 210096, China
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3
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Jodeyri Z, Taghipoor M. Multivariate analysis of nanoparticle translocation through a nanopore to improve the accuracy of resistive pulse sensing. Phys Chem Chem Phys 2024; 26:5097-5105. [PMID: 38259043 DOI: 10.1039/d3cp05565e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
The advent of nanopore-based sensors based on resistive pulse sensing gave rise to a remarkable breakthrough in the detection and characterization of nanoscale species. Some strong correlations have been reported between the resistive pulse characteristics and the particle's geometrical and physical properties. These correlations are commonly used to obtain information about the particles in commercial devices and research setups. The correlations, however, do not consider the simultaneous effect of influential factors such as particle shape and off-axis translocation, which complicates the extraction of accurate information from the resistive pulses. In this paper, we numerically studied the impact of the shape and position of particles on pulse characteristics in order to estimate the errors that arise from neglecting the influence of multiple factors on resistive pulses. We considered the sphere, oblate, and prolate particles to investigate the nanoparticle shape effect. Moreover, the trajectory dependency was examined by considering the translocation of nanoparticles away from the nanopore axis. Meanwhile, the shape effect was studied for different trajectories. We observed that the simultaneous effects of influential parameters could lead to significant errors in estimating particle properties if the coupled effects are neglected. Based on the results, we introduce the "pulse waveshape" as a novel characteristic of the resistive pulse that can be utilized as a decoupling parameter in the analysis of resistive pulses.
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Affiliation(s)
- Zohre Jodeyri
- Micro Nano Systems Laboratory (MNSL), Department of Mechanical Engineering, Sharif University of Technology, Tehran, Iran.
| | - Mojtaba Taghipoor
- Micro Nano Systems Laboratory (MNSL), Department of Mechanical Engineering, Sharif University of Technology, Tehran, Iran.
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Jeong KB, Kim JS, Dhanasekar NN, Lee MK, Chi SW. Application of nanopore sensors for biomolecular interactions and drug discovery. Chem Asian J 2022; 17:e202200679. [PMID: 35929410 DOI: 10.1002/asia.202200679] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 08/04/2022] [Indexed: 11/07/2022]
Abstract
Biomolecular interactions, including protein-protein, protein-nucleic acid, and protein/nucleic acid-ligand interactions, play crucial roles in various cellular signaling and biological processes, and offer attractive therapeutic targets in numerous human diseases. Currently, drug discovery is limited by the low efficiency and high cost of conventional ensemble-averaging-based techniques for biomolecular interaction analysis and high-throughput drug screening. Nanopores are an emerging technology for single-molecule sensing of biomolecules. Owing to the robust advantages of single-molecule sensing, nanopore sensors have contributed tremendously to nucleic acid sequencing and disease diagnostics. In this minireview, we summarize the recent developments and outlooks in single-molecule sensing of various biomolecular interactions for drug discovery applications using biological and solid-state nanopore sensors.
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Affiliation(s)
- Ki-Baek Jeong
- Disease Target Structure Research Center, Division of Biomedical Research, KRIBB, 34141, Daejeon, Republic of Korea
- Critical Diseases Diagnostics Convergence Research Center, KRIBB, 34141, Daejeon, Republic of Korea
| | - Jin-Sik Kim
- Disease Target Structure Research Center, Division of Biomedical Research, KRIBB, 34141, Daejeon, Republic of Korea
- Critical Diseases Diagnostics Convergence Research Center, KRIBB, 34141, Daejeon, Republic of Korea
| | - Naresh Niranjan Dhanasekar
- Disease Target Structure Research Center, Division of Biomedical Research, KRIBB, 34141, Daejeon, Republic of Korea
| | - Mi-Kyung Lee
- Disease Target Structure Research Center, Division of Biomedical Research, KRIBB, 34141, Daejeon, Republic of Korea
- Critical Diseases Diagnostics Convergence Research Center, KRIBB, 34141, Daejeon, Republic of Korea
- Department of Proteome Structural Biology, KRIBB School of Bioscience, University of Science and Technology, 34113, Daejeon, Republic of Korea
| | - Seung-Wook Chi
- Disease Target Structure Research Center, Division of Biomedical Research, KRIBB, 34141, Daejeon, Republic of Korea
- Department of Proteome Structural Biology, KRIBB School of Bioscience, University of Science and Technology, 34113, Daejeon, Republic of Korea
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5
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Das C, Singh S, Bhakta S, Mishra P, Biswas G. Bio-modified magnetic nanoparticles with Terminalia arjuna bark extract for the removal of methylene blue and lead (II) from simulated wastewater. CHEMOSPHERE 2022; 291:132673. [PMID: 34736943 DOI: 10.1016/j.chemosphere.2021.132673] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 10/06/2021] [Accepted: 10/23/2021] [Indexed: 06/13/2023]
Abstract
This study reports a greener, cheaper and convenient approach to synthesize Terminalia arjuna bark extract coated magnetite nanoparticles (TA@MNPs) using the co-precipitation method and efficient removal of methylene blue (MB) and lead ions [Pb(II)] from simulated wastewater. The synthesized nanoparticles (NPs) were characterized by various techniques such as DLS, XRD, FTIR, HRTEM, AGM, and TGA. From TGA analysis, TA@MNPs was found to be stable even after 500 °C. Using the batch method, maximum removal was achieved at pH 9.0 for MB and pH 3.0 for Pb(II) solutions, respectively. Adsorption study showed that TA@MNPs followed pseudo-second-order kinetics by both adsorbates while isotherm modeling towards adsorption of Pb(II) and MB exhibited Langmuir and Freundlich isotherm respectively. The maximum adsorption capacity for Pb(II) on TA@MNPs was 210.5 mg g-1. The thermodynamic study proved the spontaneity of the physisorption process. Regeneration studies were also performed using five different eluents for the two adsorbents. Overall, TA@MNPs effectively removed pollutants from wastewater and thus could be potentially useful in providing clean water in a cheaper way.
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Affiliation(s)
- Chanchal Das
- Department of Chemistry, Cooch Behar Panchanan Barma University, Cooch Behar, West Bengal, 736101, India
| | - Sanjay Singh
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India
| | - Snehasis Bhakta
- Department of Chemistry, Cooch Behar College, Cooch Behar, West Bengal, 736101, India
| | - Prashant Mishra
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India.
| | - Goutam Biswas
- Department of Chemistry, Cooch Behar Panchanan Barma University, Cooch Behar, West Bengal, 736101, India.
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6
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Ren R, Sun M, Goel P, Cai S, Kotov NA, Kuang H, Xu C, Ivanov AP, Edel JB. Single-Molecule Binding Assay Using Nanopores and Dimeric NP Conjugates. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2103067. [PMID: 34323323 DOI: 10.1002/adma.202103067] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 05/25/2021] [Indexed: 06/13/2023]
Abstract
The ability to measure biomarkers, both specifically and selectively at the single-molecule level in biological fluids, has the potential to transform the diagnosis, monitoring, and therapeutic intervention of diseases. The use of nanopores has been gaining prominence in this area, not only for sequencing but more recently in screening applications. The selectivity of nanopore sensing can be substantially improved with the use of labels, but substantial challenges remain, especially when trying to differentiate between bound from unbound targets. Here highly sensitive and selective molecular probes made from nanoparticles (NPs) that self-assemble and dimerize upon binding to a biological target are designed. It is shown that both single and paired NPs can be successfully resolved and detected at the single-molecule nanopore sensing and can be used for applications such as antigen/antibody detection and microRNA (miRNA) sequence analysis. It is expected that such technology will contribute significantly to developing highly sensitive and selective strategies for the diagnosis and screening of diseases without the need for sample processing or amplification while requiring minimal sample volume.
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Affiliation(s)
- Ren Ren
- Department of Chemistry, Molecular Science Research Hub, Imperial College London, White City Campus, 82 Wood Lane, London, W12 0BZ, UK
| | - Maozhong Sun
- Key Lab of Synthetic and Biological Colloids, Ministry of Education, State Key Lab of Food Science and Technology, International Joint Research Laboratory for Biointerface and Biodetection, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, P. R. China
| | - Pratibha Goel
- Department of Chemistry, Molecular Science Research Hub, Imperial College London, White City Campus, 82 Wood Lane, London, W12 0BZ, UK
| | - Shenglin Cai
- Department of Chemistry, Molecular Science Research Hub, Imperial College London, White City Campus, 82 Wood Lane, London, W12 0BZ, UK
| | - Nicholas A Kotov
- Department of Chemical Engineering, University of Michigan, Ann Arbor, MI, 48109, USA
- Department of Materials Science and Engineering, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Hua Kuang
- Key Lab of Synthetic and Biological Colloids, Ministry of Education, State Key Lab of Food Science and Technology, International Joint Research Laboratory for Biointerface and Biodetection, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, P. R. China
| | - Chuanlai Xu
- Key Lab of Synthetic and Biological Colloids, Ministry of Education, State Key Lab of Food Science and Technology, International Joint Research Laboratory for Biointerface and Biodetection, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, P. R. China
| | - Aleksandar P Ivanov
- Department of Chemistry, Molecular Science Research Hub, Imperial College London, White City Campus, 82 Wood Lane, London, W12 0BZ, UK
| | - Joshua B Edel
- Department of Chemistry, Molecular Science Research Hub, Imperial College London, White City Campus, 82 Wood Lane, London, W12 0BZ, UK
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Rajpal S, Bhakta S, Mishra P. Biomarker imprinted magnetic core-shell nanoparticles for rapid, culture free detection of pathogenic bacteria. J Mater Chem B 2021; 9:2436-2446. [PMID: 33625438 DOI: 10.1039/d0tb02842h] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Rapid and selective detection of microorganisms in complex biological systems draws huge attention to address the rising issue of antimicrobial resistance. Diagnostics based on the identification of whole microorganisms are laborious, time-consuming and costly, thus alternative strategies for early clinical diagnosis include biomarker based microbial detection. This paper describes a low-cost, easy-to-use method for the detection of Pseudomonas aeruginosa infections by specifically identifying a biomarker pyocyanin, using surface-molecularly imprinted nanoparticles or "plastibodies". The selective nanopockets are created by templating pyocyanin onto 20 nm allyl-functionalized magnetic nanoparticles coated with a thin layer of the acrylamide-based polymer. This functional material with an impressive imprinting factor (IF) of 5 and a binding capacity of ∼2.5 mg g-1 of polymers can be directly applied for the detection of bacteria in complex biological samples based on the presence of pyocyanin. These MIPs are highly selective and sensitive to pyocyanin and can consistently bind with pyocyanin in repeated use. Finally, the facile and efficient capture of pyocyanin has versatile applications ranging from biomarker based culture free detection of P. aeruginosa to monitoring of the therapeutic regime, in addition to developing a new class of antibiotics.
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Affiliation(s)
- Soumya Rajpal
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India.
| | - Snehasis Bhakta
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India. and Department of Chemistry, Cooch Behar College, West Bengal 736101, India and Nanoscale Research Facilities, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Prashant Mishra
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi 110016, India.
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8
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Wang L, Ma Y, Wang L. High selectivity sensing of bovine serum albumin: The combination of glass nanopore and molecularly imprinted technology. Biosens Bioelectron 2021; 178:113056. [DOI: 10.1016/j.bios.2021.113056] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 01/10/2021] [Accepted: 01/27/2021] [Indexed: 12/22/2022]
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9
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An origami paper-based nanoformulated immunosensor detects picograms of VEGF-C per milliliter of blood. Commun Biol 2021; 4:121. [PMID: 33500522 PMCID: PMC7838172 DOI: 10.1038/s42003-020-01607-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Accepted: 12/16/2020] [Indexed: 11/23/2022] Open
Abstract
Detecting vascular endothelial growth factor C (VEGF-C), a kind of tumor biomarker, is of significant clinical importance in evaluating the prognosis of patients with cancer. However, laboratory analyses are usually not suitable for point-of-care testing because they are expensive and time consuming. In response to these challenges, we fabricated an origami paper-based microfluidic electrochemical device. To improve the specificity of VEGF-C detection, nanocomposites, synthesized by new methylene blue (NMB), amino-functional single-walled carbon nanotubes (NH2-SWCNTs), and gold nanoparticles (AuNPs), were used to modify the surface of working electrodes. Results of electrochemical detection showed that the immunosensor had excellent linearity, ranging from 0.01 to 100 ng mL−1 (R2 = 0.988), and the limit of detection was 10 pg mL−1. To confirm the high specificity of the device under real-world conditions, we evaluated the device using clinical serum samples from our hospital. The results demonstrated that the device had an excellent performance and could provide a platform for real-time detection of cancers. Sun, Wang et al. report an origami paper-based immunosensor for the electrochemical detection of the VEGF-C biomarker in blood serum. The immunosensor is made by modifying the surface of working electrodes with new methylene blue, amino-functional single-walled carbon nanotubes, and gold nanoparticles and demonstrates excellent performance with a limit of detection in the range of picograms per milliliter.
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Liu Y, Xu C, Gao T, Chen X, Wang J, Yu P, Mao L. Sizing Single Particles at the Orifice of a Nanopipette. ACS Sens 2020; 5:2351-2358. [PMID: 32672038 DOI: 10.1021/acssensors.9b02520] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Developing new methods and techniques for the size analysis of particles in a solution is highly desirable not only for the industrial screening of particles but also for single biological entity analysis (e.g., single cells or single vesicles). Herein, we report a new technique for sizing single particles in a solution with a nanopipette. The rationale is essentially based on ion-current blockage when the particles approach the proximity of a nanopipette orifice. By rationally controlling the geometry of the nanopipette and the applied potential, the spike-type ion current transient generated from the motion of particles in the process of "collision and departure" is employed for sizing single particles. The results show that both the relative ion-current change (ΔI/I0) and the dwell time (Δt) of spike-type transient are dependent on particle size. Differently, Δt is also related to an externally applied voltage. Statistical analysis shows that ΔI/I0 is proportional to the particle diameter, and this linear relationship is further understood by finite-element simulations. This study not only provides a new principle for sizing single particles in a solution but also is helpful to understand the motion of a particle near the orifice of the nanopipette.
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Affiliation(s)
- Yang Liu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- Research Center for Analytical Sciences, Department of Chemistry, College of Sciences, Northeastern University, Box 332, Shenyang 110819, China
| | - Cong Xu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tienan Gao
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- Research Center for Analytical Sciences, Department of Chemistry, College of Sciences, Northeastern University, Box 332, Shenyang 110819, China
| | - Xuwei Chen
- Research Center for Analytical Sciences, Department of Chemistry, College of Sciences, Northeastern University, Box 332, Shenyang 110819, China
| | - Jianhua Wang
- Research Center for Analytical Sciences, Department of Chemistry, College of Sciences, Northeastern University, Box 332, Shenyang 110819, China
| | - Ping Yu
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lanqun Mao
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
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Liu X, Zeng Q, Liu C, Wang L. A Fourier Transform-Induced Data Process for Label-Free Selective Nanopore Analysis under Sinusoidal Voltage Excitations. Anal Chem 2020; 92:11635-11643. [PMID: 32786474 DOI: 10.1021/acs.analchem.0c01339] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Nanopore analysis based on a resistive-pulse technique is an attractive tool for single-molecule detection in different fields, but it suffers a great drawback in selectivity. A common solution to this challenge is to add extra sensing aptamers and labels to analytes by improving the sensitivity of their pulses for distinguishing. Compared to the labeling methods, we alternatively develop and demonstrate a novel data process for label-free nanopore analysis that enables the conversion of resistive current signals to more specific frequency domain phase angle features with the contribution from both sinusoidal voltage excitation and Fourier transform. In particular, we find that the transmural capacitance induced by nanoparticle translocations under a sinusoidal voltage plays an important role in this process, making phase angle features more pronounced. In practical applications, the method is successfully applied to directly distinguish the translocation events through a nanopipette by their unique phase angles for similarly sized SiO2, Ag, and Au nanoparticles and soft living organisms of HeLa and LoVo and even in a more complicated case of a SiO2, Ag, and Au nanoparticle mixture.
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Affiliation(s)
- Xuye Liu
- School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou 510640, China
| | - Qiang Zeng
- School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou 510640, China
| | - Cheng Liu
- School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou 510640, China
| | - Lishi Wang
- School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou 510640, China
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Pan R, Hu K, Jia R, Rotenberg SA, Jiang D, Mirkin MV. Resistive-Pulse Sensing Inside Single Living Cells. J Am Chem Soc 2020; 142:5778-5784. [DOI: 10.1021/jacs.9b13796] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Rongrong Pan
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- State Key Laboratory of Analytical Chemistry for Life and School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P. R. China
| | - Keke Hu
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center of CUNY, New York, New York 10016, United States
| | - Rui Jia
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center of CUNY, New York, New York 10016, United States
| | - Susan A. Rotenberg
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center of CUNY, New York, New York 10016, United States
| | - Dechen Jiang
- State Key Laboratory of Analytical Chemistry for Life and School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P. R. China
| | - Michael V. Mirkin
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center of CUNY, New York, New York 10016, United States
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13
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Liu X, Liu C, Yang J, Zhang R, Zeng Q, Wang L. Detection and FEM studies of dichromate (Cr2O72−) by allyltriethoxysilane modified nanochannel. J Electroanal Chem (Lausanne) 2020. [DOI: 10.1016/j.jelechem.2020.113818] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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14
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Pan R, Hu K, Jiang D, Samuni U, Mirkin MV. Electrochemical Resistive-Pulse Sensing. J Am Chem Soc 2019; 141:19555-19559. [DOI: 10.1021/jacs.9b10329] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Rongrong Pan
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- State Key Laboratory of Analytical Chemistry for Life and School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P.R. China
| | - Keke Hu
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center, City University of New York, New York, New York 10016, United States
| | - Dechen Jiang
- State Key Laboratory of Analytical Chemistry for Life and School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, P.R. China
| | - Uri Samuni
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center, City University of New York, New York, New York 10016, United States
| | - Michael V. Mirkin
- Department of Chemistry and Biochemistry, Queens College-CUNY, Flushing, New York 11367, United States
- The Graduate Center, City University of New York, New York, New York 10016, United States
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15
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Yu R, Ying Y, Gao R, Long Y. Confined Nanopipette Sensing: From Single Molecules, Single Nanoparticles, to Single Cells. Angew Chem Int Ed Engl 2019; 58:3706-3714. [DOI: 10.1002/anie.201803229] [Citation(s) in RCA: 129] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 05/25/2018] [Indexed: 01/09/2023]
Affiliation(s)
- Ru‐Jia Yu
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Yi‐Lun Ying
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Rui Gao
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Yi‐Tao Long
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
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16
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Yu R, Ying Y, Gao R, Long Y. Detektieren mit Nanopipetten im eingeschränkten Raum: von einzelnen Molekülen über Nanopartikel hin zu der Zelle. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803229] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Ru‐Jia Yu
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| | - Yi‐Lun Ying
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| | - Rui Gao
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
| | - Yi‐Tao Long
- Key Laboratory for Advanced MaterialsSchool of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 VR China
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17
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Wang Y, Shan X, Tao N. Emerging tools for studying single entity electrochemistry. Faraday Discuss 2018; 193:9-39. [PMID: 27722354 DOI: 10.1039/c6fd00180g] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Electrochemistry studies charge transfer and related processes at various microscopic structures (atomic steps, islands, pits and kinks on electrodes), and mesoscopic materials (nanoparticles, nanowires, viruses, vesicles and cells) made by nature and humans, involving ions and molecules. The traditional approach measures averaged electrochemical quantities of a large ensemble of these individual entities, including the microstructures, mesoscopic materials, ions and molecules. There is a need to develop tools to study single entities because a real system is usually heterogeneous, e.g., containing nanoparticles with different sizes and shapes. Even in the case of "homogeneous" molecules, they bind to different microscopic structures of an electrode, assume different conformations and fluctuate over time, leading to heterogeneous reactions. Here we highlight some emerging tools for studying single entity electrochemistry, discuss their strengths and weaknesses, and provide personal views on the need for tools with new capabilities for further advancing single entity electrochemistry.
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Affiliation(s)
- Yixian Wang
- Center for Biosensors and Bioelectronics, Biodesign Institute and School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA.
| | - Xiaonan Shan
- Center for Biosensors and Bioelectronics, Biodesign Institute and School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA.
| | - Nongjian Tao
- Center for Biosensors and Bioelectronics, Biodesign Institute and School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA. and State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China
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18
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Peng R, Li D. Particle detection on microfluidic chips by differential resistive pulse sensing (RPS) method. Talanta 2018; 184:418-428. [PMID: 29674063 DOI: 10.1016/j.talanta.2018.03.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 03/05/2018] [Accepted: 03/09/2018] [Indexed: 11/19/2022]
Abstract
The resistive pulse sensing (RPS) method has been widely used for characterization of particles, cells, and biomolecules due to its merits of high sensitivity and resolution. This paper investigates working parameters involved in detecting submicron and micron-sized particles by the differential RPS method on microfluidic chips. Effects of particle-to-sensor size ratio, ionic concentration and pH of the electrolyte solution, and applied electric field are studied systematically by using polystyrene particles with a size range from 140 nm to 5 µm. The results show that both the amplitude and the signal-to-noise ratio (SNR) of the RPS signals increase with the particle-to-sensor size ratio as well as the ionic concentration of the electrolyte media. The amplitude of the RPS signals also increases with increasing applied voltage, while the SNR experiences an upslope at low voltages and a decline under the condition of high voltages. pH has little effect on the background noise of the differential RPS signals but reduces the amplitude of the RPS signals at high pH. Grouping of RPS signals is considered to be caused by interactions between the sensor walls and the particles. Nanoparticle detection by the differential RPS method can be enhanced by optimizing these working parameters.
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Affiliation(s)
- Ran Peng
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1
| | - Dongqing Li
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1.
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19
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Sze JYY, Ivanov AP, Cass AEG, Edel JB. Single molecule multiplexed nanopore protein screening in human serum using aptamer modified DNA carriers. Nat Commun 2017; 8:1552. [PMID: 29146902 PMCID: PMC5691071 DOI: 10.1038/s41467-017-01584-3] [Citation(s) in RCA: 133] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2017] [Accepted: 10/02/2017] [Indexed: 01/08/2023] Open
Abstract
The capability to screen a range of proteins at the single-molecule level with enhanced selectivity in biological fluids has been in part a driving force in developing future diagnostic and therapeutic strategies. The combination of nanopore sensing and nucleic acid aptamer recognition comes close to this ideal due to the ease of multiplexing, without the need for expensive labelling methods or extensive sample pre-treatment. Here, we demonstrate a fully flexible, scalable and low-cost detection platform to sense multiple protein targets simultaneously by grafting specific sequences along the backbone of a double-stranded DNA carrier. Protein bound to the aptamer produces unique ionic current signatures which facilitates accurate target recognition. This powerful approach allows us to differentiate individual protein sizes via characteristic changes in the sub-peak current. Furthermore, we show that by using DNA carriers it is possible to perform single-molecule screening in human serum at ultra-low protein concentrations. It is still a challenge for current nanopore sensing methods to differentiate multiple analytes from complex biological material. Here, the authors graft nucleic acid aptamer sequences along the backbone of a double stranded DNA carrier for the detection of multiple protein targets in human serum.
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Affiliation(s)
- Jasmine Y Y Sze
- Department of Chemistry, Imperial College London, Exhibition Road, London, SW7 2AZ, UK
| | - Aleksandar P Ivanov
- Department of Chemistry, Imperial College London, Exhibition Road, London, SW7 2AZ, UK.
| | - Anthony E G Cass
- Department of Chemistry, Imperial College London, Exhibition Road, London, SW7 2AZ, UK
| | - Joshua B Edel
- Department of Chemistry, Imperial College London, Exhibition Road, London, SW7 2AZ, UK.
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20
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Yu Y, Sundaresan V, Bandyopadhyay S, Zhang Y, Edwards MA, McKelvey K, White HS, Willets KA. Three-Dimensional Super-resolution Imaging of Single Nanoparticles Delivered by Pipettes. ACS NANO 2017; 11:10529-10538. [PMID: 28968077 DOI: 10.1021/acsnano.7b05902] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Controlled three-dimensional positioning of nanoparticles is achieved by delivering single fluorescent nanoparticles from a nanopipette and capturing them at well-defined regions of an electrified substrate. To control the position of single nanoparticles, the force of the pressure-driven flow from the pipette is balanced by the attractive electrostatic force at the substrate, providing a strategy by which nanoparticle trajectories can be manipulated in real time. To visualize nanoparticle motion, a resistive-pulse electrochemical setup is coupled with an optical microscope, and nanoparticle trajectories are tracked in three dimensions using super-resolution fluorescence imaging to obtain positional information with precision in the tens of nanometers. As the particles approach the substrate, the diffusion kinetics are analyzed and reveal either subdiffusive (hindered) or superdiffusive (directed) motion depending on the electric field at the substrate and the pressure-driven flow from the pipette. By balancing the effects of the forces exerted on the particle by the pressure and electric fields, controlled, real-time manipulation of single nanoparticle trajectories is achieved. The developed approach has implications for a variety of applications such as surface patterning and drug delivery using colloidal nanoparticles.
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Affiliation(s)
- Yun Yu
- Department of Chemistry, Temple University , Philadelphia, Pennsylvania 19122, United States
| | - Vignesh Sundaresan
- Department of Chemistry, Temple University , Philadelphia, Pennsylvania 19122, United States
| | | | - Yulun Zhang
- Department of Chemistry, University of Utah , Salt Lake City, Utah 84112, United States
| | - Martin A Edwards
- Department of Chemistry, University of Utah , Salt Lake City, Utah 84112, United States
| | - Kim McKelvey
- Department of Chemistry, University of Utah , Salt Lake City, Utah 84112, United States
| | - Henry S White
- Department of Chemistry, University of Utah , Salt Lake City, Utah 84112, United States
| | - Katherine A Willets
- Department of Chemistry, Temple University , Philadelphia, Pennsylvania 19122, United States
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21
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Alibakhshi MA, Halman JR, Wilson J, Aksimentiev A, Afonin KA, Wanunu M. Picomolar Fingerprinting of Nucleic Acid Nanoparticles Using Solid-State Nanopores. ACS NANO 2017; 11:9701-9710. [PMID: 28841287 PMCID: PMC5959297 DOI: 10.1021/acsnano.7b04923] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Nucleic acid nanoparticles (NANPs) are an emerging class of programmable structures with tunable shape and function. Their promise as tools for fundamental biophysics studies, molecular sensing, and therapeutic applications necessitates methods for their detection and characterization at the single-particle level. In this work, we study electrophoretic transport of individual ring-shaped and cube-shaped NANPs through solid-state nanopores. In the optimal nanopore size range, the particles must deform to pass through, which considerably increases their residence time within the pore. Such anomalously long residence times permit detection of picomolar amounts of NANPs when nanopore measurements are carried out at a high transmembrane bias. In the case of a NANP mixture, the type of individual particle passing through nanopores can be efficiently determined from analysis of a single electrical pulse. Molecular dynamics simulations provide insight into the mechanical barrier to transport of the NANPs and corroborate the difference in the signal amplitudes observed for the two types of particles. Our study serves as a basis for label-free analysis of soft programmable-shape nanoparticles.
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Affiliation(s)
| | - Justin R. Halman
- Nanoscale Science Program, Department of Chemistry, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, United States
| | - James Wilson
- Department of Physics, University of Illinois at Urbana—Champaign, Urbana, Illinois 61801, United States
| | - Aleksei Aksimentiev
- Department of Physics, University of Illinois at Urbana—Champaign, Urbana, Illinois 61801, United States
| | - Kirill A. Afonin
- Nanoscale Science Program, Department of Chemistry, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, United States
- The Center for Biomedical Engineering and Science, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, United States
| | - Meni Wanunu
- Department of Physics, Northeastern University, Boston, Massachusetts 02115, United States
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
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22
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Chen R, Balla RJ, Lima A, Amemiya S. Characterization of Nanopipet-Supported ITIES Tips for Scanning Electrochemical Microscopy of Single Solid-State Nanopores. Anal Chem 2017; 89:9946-9952. [PMID: 28819966 PMCID: PMC5683184 DOI: 10.1021/acs.analchem.7b02269] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Nanoscale scanning electrochemical microscopy (SECM) is a powerful scanning probe technique that enables high-resolution imaging of chemical processes at single nanometer-sized objects. However, it has been a challenging task to quantitatively understand nanoscale SECM images, which requires accurate characterization of the size and geometry of nanoelectrode tips. Herein, we address this challenge through transmission electron microscopy (TEM) of quartz nanopipets for SECM imaging of single solid-state nanopores by using nanopipet-supported interfaces between two immiscible electrolyte solutions (ITIES) as tips. We take advantage of the high resolution of TEM to demonstrate that laser-pulled quartz nanopipets reproducibly yield not only an extremely small tip diameter of ∼30 nm, but also a substantial tip roughness of ∼5 nm. The size and roughness of a nanopipet can be reliably determined by optimizing the intensity of the electron beam not to melt or deform the quartz nanotip without a metal coating. Electrochemically, the nanoscale ITIES supported by a rough nanotip gives higher amperometric responses to tetrabutylammonium than expected for a 30 nm diameter disc tip. The finite element simulation of sphere-cap ITIES tips accounts for the high current responses and also reveals that the SECM images of 100 nm diameter Si3N4 nanopores are enlarged along the direction of the tip scan. Nevertheless, spatial resolution is not significantly compromised by a sphere-cap tip, which can be scanned in closer proximity to the substrate. This finding augments the utility of a protruded tip, which can be fabricated and miniaturized more readily to facilitate nanoscale SECM imaging.
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Affiliation(s)
- Ran Chen
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania, 15260, United States
| | - Ryan J. Balla
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania, 15260, United States
| | - Alex Lima
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania, 15260, United States
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, 05508-000, São Paulo, SP, Brazil
| | - Shigeru Amemiya
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania, 15260, United States
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23
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Yu RJ, Ying YL, Hu YX, Gao R, Long YT. Label-Free Monitoring of Single Molecule Immunoreaction with a Nanopipette. Anal Chem 2017; 89:8203-8206. [DOI: 10.1021/acs.analchem.7b01921] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Ru-Jia Yu
- Key Laboratory for Advanced
Materials, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China
| | - Yi-Lun Ying
- Key Laboratory for Advanced
Materials, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China
| | - Yong-Xu Hu
- Key Laboratory for Advanced
Materials, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China
| | - Rui Gao
- Key Laboratory for Advanced
Materials, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China
| | - Yi-Tao Long
- Key Laboratory for Advanced
Materials, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China
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24
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Song Y, Zhang J, Li D. Microfluidic and Nanofluidic Resistive Pulse Sensing: A Review. MICROMACHINES 2017; 8:E204. [PMID: 30400393 PMCID: PMC6190343 DOI: 10.3390/mi8070204] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Revised: 06/11/2017] [Accepted: 06/21/2017] [Indexed: 12/31/2022]
Abstract
The resistive pulse sensing (RPS) method based on the Coulter principle is a powerful method for particle counting and sizing in electrolyte solutions. With the advancement of micro- and nano-fabrication technologies, microfluidic and nanofluidic resistive pulse sensing technologies and devices have been developed. Due to the unique advantages of microfluidics and nanofluidics, RPS sensors are enabled with more functions with greatly improved sensitivity and throughput and thus have wide applications in fields of biomedical research, clinical diagnosis, and so on. Firstly, this paper reviews some basic theories of particle sizing and counting. Emphasis is then given to the latest development of microfuidic and nanofluidic RPS technologies within the last 6 years, ranging from some new phenomena, methods of improving the sensitivity and throughput, and their applications, to some popular nanopore or nanochannel fabrication techniques. The future research directions and challenges on microfluidic and nanofluidic RPS are also outlined.
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Affiliation(s)
- Yongxin Song
- Department of Marine Engineering, Dalian Maritime University, Dalian 116026, China.
| | - Junyan Zhang
- Department of Marine Engineering, Dalian Maritime University, Dalian 116026, China.
| | - Dongqing Li
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, ON N2L 3G1, Canada.
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25
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Peng R, Li D. Detection and sizing of nanoparticles and DNA on PDMS nanofluidic chips based on differential resistive pulse sensing. NANOSCALE 2017; 9:5964-5974. [PMID: 28440838 DOI: 10.1039/c7nr00488e] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The RPS (Resistive Pulse Sensing) technique is a popular tool for the label-free detection of particles. This paper describes a simple, cost-effective PDMS nanofluidic chip for the detection and characterization of nanoparticles based on the differential RPS technique with high resolution and sensitivity. The chip is composed of two layers of PDMS slabs. Microchannel systems fabricated by the photolithography method on the top layer are used for sample loading and differential signal acquisition, and a straight nanochannel on the bottom layer fabricated by an unconventional approach bridging the gap between the microchannels works as an RPS sensing gate. A single-stage differential amplifier is used to amplify the RPS signals when particles or DNA pass through the sensing gate. It was demonstrated that this nanofluidic RPS chip can detect nanoparticles as small as 23 nm with a high SNR (Signal-to-Noise Ratio). The experimental results also show that the device is able to distinguish nanoparticles of smaller size differences such as 60 nm and 83 nm with high resolution, showing superior performance in comparison with the results obtained from DLS (Dynamic Light Scattering). This differential nano-RPS chip was also applied to detect the translocation of dsDNA molecules.
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Affiliation(s)
- Ran Peng
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, Ontario, CanadaN2L 3G1.
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26
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Lin X, Ivanov AP, Edel JB. Selective single molecule nanopore sensing of proteins using DNA aptamer-functionalised gold nanoparticles. Chem Sci 2017; 8:3905-3912. [PMID: 28626560 PMCID: PMC5465561 DOI: 10.1039/c7sc00415j] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 03/14/2017] [Indexed: 01/26/2023] Open
Abstract
Single molecule detection methods, such as nanopore sensors have found increasing importance in applications ranging from gaining a better understanding of biophysical processes to technology driven solutions such as DNA sequencing. However, challenges remain especially in relation to improving selectivity to probe specific targets or to alternatively enable detection of smaller molecules such as small-sized proteins with a sufficiently high signal-to-noise ratio. In this article, we propose a solution to these technological challenges by using DNA aptamer-modified gold nanoparticles (AuNPs) that act as a molecular carrier through the nanopore sensor. We show that this approach offers numerous advantages including: high levels of selectivity, efficient capture from a complex mixture, enhanced signal, minimized analyte-sensor surface interactions, and finally can be used to enhance the event detection rate. This is demonstrated by incorporating a lysozyme binding aptamer to a 5 nm AuNP carrier to selectively probe lysozyme within a cocktail of proteins. We show that nanopores can reveal sub-complex molecular information, by discriminating the AuNP from the protein analyte, indicating the potential use of this technology for single molecule analysis of different molecular analytes specifically bound to AuNP.
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Affiliation(s)
- Xiaoyan Lin
- Department of Chemistry , Imperial College London , South Kensington , London SW7 2AZ , UK . ;
| | - Aleksandar P Ivanov
- Department of Chemistry , Imperial College London , South Kensington , London SW7 2AZ , UK . ;
| | - Joshua B Edel
- Department of Chemistry , Imperial College London , South Kensington , London SW7 2AZ , UK . ;
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27
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Wang Y, Wang D, Mirkin MV. Resistive-pulse and rectification sensing with glass and carbon nanopipettes. Proc Math Phys Eng Sci 2017; 473:20160931. [PMID: 28413354 DOI: 10.1098/rspa.2016.0931] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Accepted: 02/08/2017] [Indexed: 11/12/2022] Open
Abstract
Along with more prevalent solid-state nanopores, glass or quartz nanopipettes have found applications in resistive-pulse and rectification sensing. Their advantages include the ease of fabrication, small physical size and needle-like geometry, rendering them useful for local measurements in small spaces and delivery of nanoparticles/biomolecules. Carbon nanopipettes fabricated by depositing a thin carbon layer on the inner wall of a quartz pipette provide additional means for detecting electroactive species and fine-tuning the current rectification properties. In this paper, we discuss the fundamentals of resistive-pulse sensing with nanopipettes and our recent studies of current rectification in carbon pipettes.
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Affiliation(s)
- Yixian Wang
- Department of Chemistry and Biochemistry, California State University, Los Angeles, CA 90032, USA
| | - Dengchao Wang
- Department of Chemistry and Biochemistry, Queens College, City University of New York, Flushing, NY 11367, USA
| | - Michael V Mirkin
- Department of Chemistry and Biochemistry, Queens College, City University of New York, Flushing, NY 11367, USA
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28
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Chen R, Hu K, Yu Y, Mirkin MV, Amemiya S. Focused-Ion-Beam-Milled Carbon Nanoelectrodes for Scanning Electrochemical Microscopy. JOURNAL OF THE ELECTROCHEMICAL SOCIETY 2016; 163:H3032-H3037. [PMID: 27642187 PMCID: PMC5025261 DOI: 10.1149/2.0071604jes] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Nanoscale scanning electrochemical microscopy (SECM) has emerged as a powerful electrochemical method that enables the study of interfacial reactions with unprecedentedly high spatial and kinetic resolution. In this work, we develop carbon nanoprobes with high electrochemical reactivity and well-controlled size and geometry based on chemical vapor deposition of carbon in quartz nanopipets. Carbon-filled nanopipets are milled by focused ion beam (FIB) technology to yield a flat disk tip with a thin quartz sheath as confirmed by transmission electron microscopy. The extremely high electroactivity of FIB-milled carbon nanotips is quantified by enormously high standard electron-transfer rate constants of ≥10 cm/s for Ru(NH3)63+. The tip size and geometry are characterized in electrolyte solutions by SECM approach curve measurements not only to determine inner and outer tip radii of down to ~27 and ~38 nm, respectively, but also to ensure the absence of a conductive carbon layer on the outer wall. In addition, FIB-milled carbon nanotips reveal the limited conductivity of ~100 nm-thick gold films under nanoscale mass-transport conditions. Importantly, carbon nanotips must be protected from electrostatic damage to enable reliable and quantitative nanoelectrochemical measurements.
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Affiliation(s)
- Ran Chen
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania, 15260, USA
| | - Keke Hu
- Department of Chemistry and Biochemistry, Queens College–CUNY, Flushing, New York 11367, USA
| | - Yun Yu
- Department of Chemistry and Biochemistry, Queens College–CUNY, Flushing, New York 11367, USA
| | - Michael V. Mirkin
- Department of Chemistry and Biochemistry, Queens College–CUNY, Flushing, New York 11367, USA
| | - Shigeru Amemiya
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania, 15260, USA
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29
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Affiliation(s)
- David Perry
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Dmitry Momotenko
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Robert A. Lazenby
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Minkyung Kang
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Patrick R. Unwin
- Department of Chemistry and ‡MOAC Doctoral Training Centre, University of Warwick, Coventry CV4 7AL, United Kingdom
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30
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Wei H, Wang Y, Zhang H, Zhao H, Jiang W. Au nanoparticles fluorescence switch-mediated target recycling amplification strategy for sensitive nucleic acid detection. RSC Adv 2016. [DOI: 10.1039/c5ra23761k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
A sensitive strategy based on Au nanoparticles fluorescence switch-mediated target recycling amplification for nucleic acid detection.
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Affiliation(s)
- Haiping Wei
- Key Laboratory for Colloid and Interface Chemistry of Education Ministry
- School of Chemistry and Chemical Engineering
- Shandong University
- 250100 Jinan
- P.R. China
| | - Yan Wang
- The 88th Hospital of PLA
- 270100 Tai'an
- P.R. China
| | - Hong Zhang
- Key Laboratory for Colloid and Interface Chemistry of Education Ministry
- School of Chemistry and Chemical Engineering
- Shandong University
- 250100 Jinan
- P.R. China
| | - Haiyan Zhao
- Key Laboratory for Colloid and Interface Chemistry of Education Ministry
- School of Chemistry and Chemical Engineering
- Shandong University
- 250100 Jinan
- P.R. China
| | - Wei Jiang
- Key Laboratory for Colloid and Interface Chemistry of Education Ministry
- School of Chemistry and Chemical Engineering
- Shandong University
- 250100 Jinan
- P.R. China
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31
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Şen M, Demirci A. pH-Dependent ionic-current-rectification in nanopipettes modified with glutaraldehyde cross-linked protein membranes. RSC Adv 2016. [DOI: 10.1039/c6ra19263g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
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32
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Bhakta S, Seraji MSI, Suib SL, Rusling JF. Antibody-like Biorecognition Sites for Proteins from Surface Imprinting on Nanoparticles. ACS APPLIED MATERIALS & INTERFACES 2015; 7:28197-206. [PMID: 26636440 PMCID: PMC4749148 DOI: 10.1021/acsami.5b11650] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Natural antibodies are used widely for important applications such as biomedical analysis, cancer therapy, and directed drug delivery, but they are expensive and may have limited stability. This study describes synthesis of antibody-like binding sites by molecular imprinting on silica nanoparticles (SiNP) using a combination of four organosilane monomers with amino acid-like side chains providing hydrophobic, hydrophilic, and H-bonding interactions with target proteins. This approach provided artificial antibody (AA) nanoparticles with good selectivity and specificity to binding domains on target proteins in a relatively low-cost synthesis. The AAs were made by polymer grafting onto SiNPs for human serum albumin (HSA) and glucose oxidase (GOx). Binding affinity, selectivity, and specificity was compared to several other proteins using adsorption isotherms and surface plasmon resonance (SPR). The Langmuir-Freundlich adsorption model was used to obtain apparent binding constants (KLF) from binding isotherms of HSA (6.7 × 10(4)) and GOx (4.7 × 10(4)) to their respective AAs. These values were 4-300 fold larger compared to a series of nontemplate proteins. SPR binding studies of AAs with proteins attached to a gold surface confirmed good specificity and revealed faster binding for the target proteins compared to nontarget proteins. Target proteins retained their secondary structures upon binding. Binding capacity of AAHSA for HSA was 5.9 mg HSA/g compared to 1.4 mg/g for previously report imprinted silica beads imprinted with poly(aminophenyl)boronic acid. Also, 90% recovery for HSA spiked into 2% calf serum was found for AAHSA.
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Affiliation(s)
- Snehasis Bhakta
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
| | | | - Steven L. Suib
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
- Institute of Materials Science, University of Connecticut, Storrs, Connecticut 06269-3136, United States
| | - James F. Rusling
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
- Institute of Materials Science, University of Connecticut, Storrs, Connecticut 06269-3136, United States
- Department of Surgery and Neag Cancer Center, University of Connecticut Health Center, Farmington, Connecticut 06030, United States
- School of Chemistry, National University of Ireland at Galway, Galway, Ireland
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