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Chen H, Tian L, Sun X, Liu L, Ma R, Zhang M. Alkaline Phosphatase for Estimating the Time since Deposition of Blood Fingerprints by Scanning Electrochemical Microscopy. Anal Chem 2023; 95:18470-18478. [PMID: 38051701 DOI: 10.1021/acs.analchem.3c03692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
Blood is one of the most frequent and valuable traces encountered at crime scenes, where knowing the time since deposition (TSD) of bloodstains tremendously assists forensic experts to screen out crime-related evidence and aids in the reconstruction of the event sequence. Although increasing proof-of-concept methodologies for investigating the TSD of bloodstains have been reported, there is still no accepted strategy in forensic practice as the aging mechanism involves complex components, leading to the inaccuracy of the estimation results. Herein, an endogenous biomarker of alkaline phosphatase (ALP) was chosen to investigate the TSD by scanning electrochemical microscopy (SECM). Results demonstrate that the ALP activity acquired via SECM lateral scan assay exhibited a clear decrease over time, and a similar trend was observed on both poly(vinylidene fluoride) (PVDF) membrane and glass, with the aging kinetics on PVDF membrane being faster than glass. By means of quantitatively calculating the flux of generated p-aminophenol (PAP), we established the aging curve and realized the TSD estimation of blood fingerprints (BFPs) that was unable to be distinguished via optical measurements. Intriguingly, the as-obtained estimation accuracy ranged from 74.6 to 93.7%, proving the possibility of using an ALP biomarker and SECM. More appealingly, the predicted TSDs were capable of accurately differentiating the deposition sequence of overlapping BFPs, which was hardly achieved by optical means. Therefore, this proof-of-concept strategy demonstrates the value of SECM as a forensic tool and opens possibilities for revealing multidimensional information about crime.
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Affiliation(s)
- Hongyu Chen
- Beijing Key Laboratory for Bioengineering and Sensing Technology, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Lu Tian
- Beijing Key Laboratory for Bioengineering and Sensing Technology, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Xiangyu Sun
- Beijing Key Laboratory for Bioengineering and Sensing Technology, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Lu Liu
- Beijing Key Laboratory for Bioengineering and Sensing Technology, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
| | - Rongliang Ma
- Ministry of Public Security, Institute of Forensic Science, Beijing 100038, China
| | - Meiqin Zhang
- Beijing Key Laboratory for Bioengineering and Sensing Technology, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Beijing 100083, China
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2
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Cano-Trujillo C, García-Ruiz C, Ortega-Ojeda FE, Romolo F, Montalvo G. Forensic analysis of biological fluid stains on substrates by spectroscopic approaches and chemometrics: A review. Anal Chim Acta 2023; 1282:341841. [PMID: 37923402 DOI: 10.1016/j.aca.2023.341841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 09/20/2023] [Accepted: 09/21/2023] [Indexed: 11/07/2023]
Abstract
BACKGROUND Bodily fluid stains are one of the most relevant evidence that can be found at the crime scene as it provides a wealth of information to the investigators. They help to report on the individuals involved in the crime, to check alibis, or to determine the type of crime that has been committed. They appear as stains in different types of substrates, some of them porous, which can interfere in the analysis. The spectroscopy techniques combined with chemometrics are showing increasing potential for their use in the analysis of such samples due to them being fast, sensitive, and non-destructive. FINDINGS This is a comprehensive review of the studies that used different spectroscopic techniques followed by chemometrics for analysing biological fluid stains on several surfaces, and under various conditions. It focuses on the bodily fluid stains and the most suitable spectroscopic techniques to study forensic scientific problems such as the substrate's characteristics, the influence of ambient conditions, the aging process of the bodily fluids, the presence of animal bodily fluids and non-biological fluids (interfering substances), and the bodily fluid mixtures. The most widely used techniques were Raman spectroscopy and attenuated total reflection Fourier transform infrared spectroscopy (ATR FTIR). Nonetheless, other non-destructive techniques have been also used, like near infrared hyperspectral imaging (HSI-NIR) or surface enhanced Raman spectroscopy (SERS), among others. This work provides the criteria for the selection of the most promising non-destructive techniques for the effective in situ detection of biological fluid stains at crime scene investigations. SIGNIFICANCE AND NOVELTY The use of the proper spectroscopic and chemometric approaches on the crime scene is expected to improve the support of forensic sciences to criminal investigations. Evidence may be analysed in a non-destructive manner and kept intact for further analysis. They will also speed up forensic investigations by allowing the selection of relevant samples from occupational ones.
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Affiliation(s)
- Cristina Cano-Trujillo
- Universidad de Alcalá, Departamento de Química Analítica, Química Física e Ingeniería Química, Ctra. Madrid-Barcelona km 33,6, 28871, Alcalá de Henares, Madrid, Spain; Universidad de Alcalá, Instituto Universitario de Investigación en Ciencias Policiales, Libreros 27, 28801, Alcalá de Henares, Madrid, Spain
| | - Carmen García-Ruiz
- Universidad de Alcalá, Departamento de Química Analítica, Química Física e Ingeniería Química, Ctra. Madrid-Barcelona km 33,6, 28871, Alcalá de Henares, Madrid, Spain; Universidad de Alcalá, Instituto Universitario de Investigación en Ciencias Policiales, Libreros 27, 28801, Alcalá de Henares, Madrid, Spain
| | - Fernando E Ortega-Ojeda
- Universidad de Alcalá, Departamento de Química Analítica, Química Física e Ingeniería Química, Ctra. Madrid-Barcelona km 33,6, 28871, Alcalá de Henares, Madrid, Spain; Universidad de Alcalá, Instituto Universitario de Investigación en Ciencias Policiales, Libreros 27, 28801, Alcalá de Henares, Madrid, Spain; Universidad de Alcalá, Departamento de Ciencias de la Computación, Ctra. Madrid-Barcelona km 33,6, 28871, Alcalá de Henares, Madrid, Spain
| | - Francesco Romolo
- Università degli Studi di Bergamo, Dipartimento di Giurisprudenza, Via Moroni 255, 24127, Bergamo, Italy
| | - Gemma Montalvo
- Universidad de Alcalá, Departamento de Química Analítica, Química Física e Ingeniería Química, Ctra. Madrid-Barcelona km 33,6, 28871, Alcalá de Henares, Madrid, Spain; Universidad de Alcalá, Instituto Universitario de Investigación en Ciencias Policiales, Libreros 27, 28801, Alcalá de Henares, Madrid, Spain.
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3
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Chauhan S, Sharma S. Applications of Raman spectroscopy in the analysis of biological evidence. Forensic Sci Med Pathol 2023:10.1007/s12024-023-00660-z. [PMID: 37878163 DOI: 10.1007/s12024-023-00660-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/21/2023] [Indexed: 10/26/2023]
Abstract
During the past few decades, Raman spectroscopy has progressed and captivated added attention in the field of science. However, the application of Raman spectroscopy is not limited to the field of forensic science and analytical chemistry; it is one of the emerging spectroscopic techniques, utilized in the field of forensic science which in turn could be a supporting tool in the law and justice system. The advantage of Raman spectroscopy over the other conventional techniques is that it is rapid, reliable, and non-destructive in nature with minimal or no sample preparation. The quantitative and qualitative analysis of evidence from biological and non-biological origins could easily be performed by using Raman spectroscopy. The forensic domain is highly complex with multidisciplinary branches, and therefore a plethora of techniques are utilized for the detection, identification, and differentiation of innumerable pieces of evidence for the purpose of law and justice. Herein, a systematic review is carried out on the application of Raman spectroscopy in the realm of forensic biology and serology considering its usefulness in practical perspectives. This review paper highlights the significance of modern techniques, including micro-Raman spectroscopy, confocal Raman spectroscopy, surface-enhanced Raman spectroscopy, and paper-based surface-enhanced Raman spectroscopy, in the field of Raman spectroscopy. These techniques have demonstrated notable advancements in terms of their applications and capabilities. Furthermore, to comprehensively capture the progress in the development of Raman spectroscopy, all the published papers which could be retrieved from the available databases from the year 2007 to 2022 were incorporated.
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Affiliation(s)
- Samiksha Chauhan
- LNJN NICFS, School of Forensic Sciences, National Forensic Science University, An Institute of National Importance, Ministry of Home Affairs, Govt. of India, Delhi Campus, Delhi, 110085, India
| | - Sweety Sharma
- LNJN NICFS, School of Forensic Sciences, National Forensic Science University, An Institute of National Importance, Ministry of Home Affairs, Govt. of India, Delhi Campus, Delhi, 110085, India.
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4
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Bazyar H. On the Application of Microfluidic-Based Technologies in Forensics: A Review. SENSORS (BASEL, SWITZERLAND) 2023; 23:5856. [PMID: 37447704 PMCID: PMC10346202 DOI: 10.3390/s23135856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 06/21/2023] [Accepted: 06/22/2023] [Indexed: 07/15/2023]
Abstract
Microfluidic technology is a powerful tool to enable the rapid, accurate, and on-site analysis of forensically relevant evidence on a crime scene. This review paper provides a summary on the application of this technology in various forensic investigation fields spanning from forensic serology and human identification to discriminating and analyzing diverse classes of drugs and explosives. Each aspect is further explained by providing a short summary on general forensic workflow and investigations for body fluid identification as well as through the analysis of drugs and explosives. Microfluidic technology, including fabrication methodologies, materials, and working modules, are touched upon. Finally, the current shortcomings on the implementation of the microfluidic technology in the forensic field are discussed along with the future perspectives.
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Affiliation(s)
- Hanieh Bazyar
- Engineering Thermodynamics, Process & Energy Department, Faculty of Mechanical, Maritime and Materials Engineering, Delft University of Technology, Leeghwaterstraat 39, 2628CB Delft, The Netherlands
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5
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Tian X, Wang P, Tian Y, Zhang R, Jiang Z, Gao J. Classification method based on Siamese-like neural network for inter-species blood Raman spectra similarity measure. JOURNAL OF BIOPHOTONICS 2023; 16:e202200377. [PMID: 36906736 DOI: 10.1002/jbio.202200377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 03/07/2023] [Accepted: 03/08/2023] [Indexed: 06/07/2023]
Abstract
Analysis of blood species is an extremely important part in customs inspection, forensic investigation, wildlife protection and other fields. In this study, a classification method based on Siamese-like neural network (SNN) for interspecies blood (22 species) was proposed to measure Raman Spectra similarity. The average accuracy was above 99.20% in the test set of spectra (known species) that did not appear in the training set. This model could detect species not represented in the dataset underlying the model. After adding new species to the training set, we can update the training based on the original model without retraining the model from scratch. For species with lower accuracy, SNN model can be trained intensively in the form of enriched training data for that species. A single model can achieve both multiple-classification and binary classification functions. Moreover, SNN showed higher accuracy rates when trained with smaller datasets compared to other methods.
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Affiliation(s)
- Xianli Tian
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230026, China
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, Jiangsu, 215163, China
| | - Peng Wang
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, Jiangsu, 215163, China
| | - Yubing Tian
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230026, China
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, Jiangsu, 215163, China
| | - Rui Zhang
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230026, China
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, Jiangsu, 215163, China
| | - Zhehan Jiang
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230026, China
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, Jiangsu, 215163, China
| | - Jing Gao
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230026, China
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, Jiangsu, 215163, China
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6
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Kistenev YV, Borisov AV, Samarinova AA, Colón-Rodríguez S, Lednev IK. A novel Raman spectroscopic method for detecting traces of blood on an interfering substrate. Sci Rep 2023; 13:5384. [PMID: 37012280 PMCID: PMC10070500 DOI: 10.1038/s41598-023-31918-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 03/20/2023] [Indexed: 04/05/2023] Open
Abstract
Traces of body fluids discovered at a crime scene are a primary source of DNA evidence. Raman spectroscopy is a promising universal technique for identifying biological stains for forensic purposes. The advantages of this method include the ability to work with trace amounts, high chemical specificity, no need for sample preparation and the nondestructive nature. However, common substrate interference limits the practical application of this novel technology. To overcome this limitation, two approaches called "Reducing a spectrum complexity" (RSC) and "Multivariate curve resolution combined with the additions method" (MCRAD) were investigated for detecting bloodstains on several common substrates. In the latter approach, the experimental spectra were "titrated" numerically with a known spectrum of a targeted component. The advantages and disadvantages of both methods for practical forensics were evaluated. In addition, a hierarchical approach to reduce the possibility of false positives was suggested.
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Affiliation(s)
- Yury V Kistenev
- Laboratory of Laser Molecular Imaging and Machine Learning, Tomsk State University, Lenin Ave. 36, Tomsk, Russia, 634050.
| | - Alexei V Borisov
- Laboratory of Laser Molecular Imaging and Machine Learning, Tomsk State University, Lenin Ave. 36, Tomsk, Russia, 634050
| | - Alisa A Samarinova
- Laboratory of Laser Molecular Imaging and Machine Learning, Tomsk State University, Lenin Ave. 36, Tomsk, Russia, 634050
| | | | - Igor K Lednev
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA.
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7
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Raman spectroscopy for the identification of body fluid traces: Semen and vaginal fluid mixture. Forensic Chem 2023. [DOI: 10.1016/j.forc.2023.100468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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8
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Li H, Shen C, Wang G, Sun Q, Yu K, Li Z, Liang X, Chen R, Wu H, Wang F, Wang Z, Lian C. BloodNet: An attention-based deep network for accurate, efficient, and costless bloodstain time since deposition inference. Brief Bioinform 2023; 24:6960974. [PMID: 36572655 DOI: 10.1093/bib/bbac557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 10/28/2022] [Indexed: 12/28/2022] Open
Abstract
The time since deposition (TSD) of a bloodstain, i.e., the time of a bloodstain formation is an essential piece of biological evidence in crime scene investigation. The practical usage of some existing microscopic methods (e.g., spectroscopy or RNA analysis technology) is limited, as their performance strongly relies on high-end instrumentation and/or rigorous laboratory conditions. This paper presents a practically applicable deep learning-based method (i.e., BloodNet) for efficient, accurate, and costless TSD inference from a macroscopic view, i.e., by using easily accessible bloodstain photos. To this end, we established a benchmark database containing around 50,000 photos of bloodstains with varying TSDs. Capitalizing on such a large-scale database, BloodNet adopted attention mechanisms to learn from relatively high-resolution input images the localized fine-grained feature representations that were highly discriminative between different TSD periods. Also, the visual analysis of the learned deep networks based on the Smooth Grad-CAM tool demonstrated that our BloodNet can stably capture the unique local patterns of bloodstains with specific TSDs, suggesting the efficacy of the utilized attention mechanism in learning fine-grained representations for TSD inference. As a paired study for BloodNet, we further conducted a microscopic analysis using Raman spectroscopic data and a machine learning method based on Bayesian optimization. Although the experimental results show that such a new microscopic-level approach outperformed the state-of-the-art by a large margin, its inference accuracy is significantly lower than BloodNet, which further justifies the efficacy of deep learning techniques in the challenging task of bloodstain TSD inference. Our code is publically accessible via https://github.com/shenxiaochenn/BloodNet. Our datasets and pre-trained models can be freely accessed via https://figshare.com/articles/dataset/21291825.
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Affiliation(s)
- Huiyu Li
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Chen Shen
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Gongji Wang
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Qinru Sun
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Kai Yu
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Zefeng Li
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - XingGong Liang
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Run Chen
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Hao Wu
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Fan Wang
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Zhenyuan Wang
- Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
| | - Chunfeng Lian
- School of Mathematics and Statistics, Xi'an Jiaotong University, Xi'an, Shaanxi 710049, China
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9
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New Raman spectroscopic methods’ application in forensic science. TALANTA OPEN 2022. [DOI: 10.1016/j.talo.2022.100124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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10
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Alkhuder K. Attenuated total reflection-Fourier transform infrared spectroscopy: a universal analytical technique with promising applications in forensic analyses. Int J Legal Med 2022; 136:1717-1736. [PMID: 36050421 PMCID: PMC9436726 DOI: 10.1007/s00414-022-02882-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Accepted: 08/17/2022] [Indexed: 11/25/2022]
Abstract
Contemporary criminal investigations are based on the statements made by the victim and the eyewitnesses. They also rely on the physical evidences found in the crime scene. These evidences, and more particularly biological ones, have a great judicial value in the courtroom. They are usually used to revoke the suspect’s allegations and confirm or refute the statements made by the victim and the witnesses. Stains of body fluids are biological evidences highly sought by forensic investigators. In many criminal cases, the success of the investigation relies on the correct identification and classification of these stains. Therefore, the adoption of reliable and accurate forensic analytical methods seems to be of vital importance to attain this objective. Attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) is a modern and universal analytical technique capable of fingerprint recognition of the analyte using minimal amount of the test sample. The current systematic review aims to through light on the fundamentals of this technique and to illustrate its wide range of applications in forensic investigations. ATR-FTIR is a nondestructive technique which has demonstrated an exceptional efficiency in detecting, identifying and discriminating between stains of various types of body fluids usually encountered in crime scenes. The ATR-FTIR spectral data generated from bloodstains can be used to deduce a wealth of information related to the donor species, age, gender, and race. These data can also be exploited to discriminate between stains of different types of bloods including menstrual and peripheral bloods. In addition, ATR-FTIR has a great utility in the postmortem investigations. More particularly, in estimating the postmortem interval and diagnosing death caused by extreme weather conditions. It is also useful in diagnosing some ambiguous death causes such as fatal anaphylactic shock and diabetic ketoacidosis.
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Affiliation(s)
- Khaled Alkhuder
- Division of Microbial Disease, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, UK.
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11
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Raman Spectroscopy for the Determination of Forensically Important Bio-fluids. Forensic Sci Int 2022; 340:111441. [DOI: 10.1016/j.forsciint.2022.111441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 07/30/2022] [Accepted: 08/21/2022] [Indexed: 11/23/2022]
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12
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Almehmadi LM, Valsangkar VA, Halvorsen K, Zhang Q, Sheng J, Lednev IK. Surface-enhanced Raman spectroscopy for drug discovery: peptide-RNA binding. Anal Bioanal Chem 2022; 414:6009-6016. [PMID: 35764806 PMCID: PMC9404289 DOI: 10.1007/s00216-022-04190-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Revised: 06/06/2022] [Accepted: 06/21/2022] [Indexed: 11/01/2022]
Abstract
The ever-growing demand for new drugs highlights the need to develop novel cost- and time-effective techniques for drug discovery. Surface-enhanced Raman spectroscopy (SERS) is an emerging ultrasensitive and label-free technique that allows for the efficient detection and characterization of molecular interactions. We have recently developed a SERS platform for detecting a single protein molecule linked to a gold substrate (Almehmadi et al. Scientific Reports 2019). In this study, we extended the approach to probe the binding of potential drugs to RNA targets. To demonstrate the proof of concept, two 16-amino acid residue peptides with close primary structures and different binding affinities to the RNA CUG repeat related to myotonic dystrophy were tested. Three-microliter solutions of the RNA repeat with these peptides at nanomolar concentrations were probed using the developed approach, and the binding of only one peptide was demonstrated. The SER spectra exhibited significant fluctuations along with a sudden strong enhancement as spectra were collected consecutively from individual spots. Principal component analysis (PCA) of the SER spectral datasets indicated that free RNA repeats could be differentiated from those complexed with a peptide with 100% accuracy. The developed SERS platform provides a novel opportunity for label-free screening of RNA-binding peptides for drug discovery. Schematic representation of the SERS platform for drug discovery developed in this study.
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Affiliation(s)
- Lamyaa M Almehmadi
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA.,College of Arts and Science, RNA Institute, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA
| | - Vibhav A Valsangkar
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA.,College of Arts and Science, RNA Institute, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA
| | - Ken Halvorsen
- College of Arts and Science, RNA Institute, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA
| | - Qiang Zhang
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA
| | - Jia Sheng
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA. .,College of Arts and Science, RNA Institute, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA.
| | - Igor K Lednev
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA. .,College of Arts and Science, RNA Institute, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY, 12222, USA.
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13
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Unlocking the potential of forensic traces: Analytical approaches to generate investigative leads. Sci Justice 2022; 62:310-326. [PMID: 35598924 DOI: 10.1016/j.scijus.2022.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 03/17/2022] [Accepted: 03/19/2022] [Indexed: 11/21/2022]
Abstract
Forensic investigation involves gathering the information necessary to understand the criminal events as well as linking objects or individuals to an item, location or other individual(s) for investigative purposes. For years techniques such as presumptive chemical tests, DNA profiling or fingermark analysis have been of great value to this process. However, these techniques have their limitations, whether it is a lack of confidence in the results obtained due to cross-reactivity, subjectivity and low sensitivity; or because they are dependent on holding reference samples in a pre-existing database. There is currently a need to devise new ways to gather as much information as possible from a single trace, particularly from biological traces commonly encountered in forensic casework. This review outlines the most recent advancements in the forensic analysis of biological fluids, fingermarks and hair. Special emphasis is placed on analytical methods that can expand the information obtained from the trace beyond what is achieved in the usual practices. Special attention is paid to those methods that accurately determine the nature of the sample, as well as how long it has been at the crime scene, along with individualising information regarding the donor source of the trace.
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14
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Takamura A, Ozawa T. Recent advances of vibrational spectroscopy and chemometrics for forensic biological analysis. Analyst 2021; 146:7431-7449. [PMID: 34813634 DOI: 10.1039/d1an01637g] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Biological materials found at a crime scene are crucially important evidence for forensic investigation because they provide contextual information about a crime and can be linked to the donor-individuals through combination with DNA analysis. Applications of vibrational spectroscopy to forensic biological analysis have been emerging because of its advantageous characteristics such as the non-destructivity, rapid measurement, and quantitative evaluation, compared to most current methods based on histological observation or biochemical techniques. This review presents an overview of recent developments in vibrational spectroscopy for forensic biological analysis. We also emphasize chemometric techniques, which can elicit reliable and advanced analytical outputs from highly complex spectral data from forensic biological materials. The analytical subjects addressed herein include body fluids, hair, soft tissue, bones, and bioagents. Promising applications for various analytical purposes in forensic biology are presented. Simultaneously, future avenues of study requiring further investigation are discussed.
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Affiliation(s)
- Ayari Takamura
- Department of Chemistry, Graduate School of Science, The University of Tokyo 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan. .,RIKEN Center for Sustainable Resource Science 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
| | - Takeaki Ozawa
- Department of Chemistry, Graduate School of Science, The University of Tokyo 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
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Wang H, Ma H, Fang P, Xin Y, Li C, Wan X, He Z, Jia J, Ling Z. Dynamic confocal Raman spectroscopy of flowing blood in bionic blood vessel. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 259:119890. [PMID: 33971440 DOI: 10.1016/j.saa.2021.119890] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Revised: 03/09/2021] [Accepted: 04/25/2021] [Indexed: 06/12/2023]
Abstract
How to quickly and safely identify blood species has always been an urgent problem for scientists. Smear test method has the risk of blood contamination, and the blood itself may carry some unknown viruses or pathogens, which will bring health risks to the testing personnel. Therefore, in order to meet the urgent needs of rapid and safe detection of blood, a technology which can detect dynamic confocal Raman spectroscopy of flowing blood in bionic blood vessel was proposed. The blood, which was sealed in the bionic blood vessel, flowed through the focus gaze area of laser by the microfluidic pump, to detect the dynamic blood Raman spectrum. Human blood and cattle blood were selected as experimental objects, and the experiments were carried out under the same parameters. Combined with PCA-LDA (principal component analysis and linear discriminate analysis) classification model, the predictive classification of the two species without error recognition was realized. The hidden weak Raman signals were mined by derivative spectra, and the fundamental differences of Raman spectra of two species were compared. Then the biochemical information that caused the differences was also analyzed. The results show the method can meet the detection requirements of sealed blood, and the Raman spectra of flowing blood is more representative than those of static blood.
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Affiliation(s)
- Hongpeng Wang
- Key Laboratory of Space Active Opto-Electronics Technology of the Chinese Academy of Sciences, Shanghai 200083, China; Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai 200083, China
| | - Huanzhen Ma
- School of Life Science, Hangzhou Institute for Advanced Study, UCAS, Hangzhou 310024, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Peipei Fang
- School of Life Science, Hangzhou Institute for Advanced Study, UCAS, Hangzhou 310024, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Yingjian Xin
- Key Laboratory of Space Active Opto-Electronics Technology of the Chinese Academy of Sciences, Shanghai 200083, China; Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai 200083, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Chenhong Li
- Key Laboratory of Space Active Opto-Electronics Technology of the Chinese Academy of Sciences, Shanghai 200083, China; Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai 200083, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Xiong Wan
- Key Laboratory of Space Active Opto-Electronics Technology of the Chinese Academy of Sciences, Shanghai 200083, China; School of Life Science, Hangzhou Institute for Advanced Study, UCAS, Hangzhou 310024, China; Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai 200083, China.
| | - Zhiping He
- Key Laboratory of Space Active Opto-Electronics Technology of the Chinese Academy of Sciences, Shanghai 200083, China; Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai 200083, China.
| | - Jianjun Jia
- Key Laboratory of Space Active Opto-Electronics Technology of the Chinese Academy of Sciences, Shanghai 200083, China; Shanghai Institute of Technical Physics of the Chinese Academy of Sciences, Shanghai 200083, China; Shanghai Research Center for Quantum Sciences, Shanghai 201315, China.
| | - Zongcheng Ling
- Shandong Key Laboratory of Optical Astronomy and Solar-Terrestrial Environment, School of Space Science and Physics, Institute of Space Sciences, Shandong University, Weihai, Shandong 264209, China
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Huang TY, Yu JCC. Development of Crime Scene Intelligence Using a Hand-Held Raman Spectrometer and Transfer Learning. Anal Chem 2021; 93:8889-8896. [PMID: 34134486 DOI: 10.1021/acs.analchem.1c01099] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The classification of ignitable liquids, such as gasoline, is critical crime scene intelligence to assist arson investigations. Rapid field gasoline classification is challenging because the current forensic testing standard requires gas chromatography-mass spectrometry analysis of evidence in an accredited laboratory. In this work, we reported a new intelligent analytical platform for field identification and classification of gasoline evidence. A hand-held Raman spectrometer was utilized to collect Raman spectra of reference gasoline samples with various octane numbers. The Raman spectrum pattern was converted into image presentations by continuous wavelet transformation (CWT) to facilitate artificial intelligence development using the transfer learning technique. GoogLeNet, a pretrained convolutional neural network (CNN), was adapted to train the classification model. Six different classification models were also developed from the same data set using conventional machine learning algorithms to evaluate the performance of our new approach. The experimental results indicated that the pretrained CNN model developed by our new data workflow outperformed other models in several performance benchmarks, such as accuracy, precision, recall, F1, Cohen's Kappa, and Matthews correlation coefficient. When the transfer learning model was challenged with the data collected from weathered gasoline samples, the classifier could still offer 73 and 53% accuracy for 50 and 25% weathered gasoline samples, respectively. In conclusion, wavelet transforms combined with transfer learning successfully processed and classified complex Raman spectral data without feature engineering. We envision that this nondestructive, automated, and accurate platform will accelerate crime scene intelligence development based on evidence's chemical signatures detected by hand-held Raman spectrometers.
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Affiliation(s)
- Ting-Yu Huang
- Department of Forensic Science, Sam Houston State University, Huntsville, Texas 77340, United States
| | - Jorn Chi Chung Yu
- Department of Forensic Science, Sam Houston State University, Huntsville, Texas 77340, United States
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Zulfiqar M, Ahmad M, Sohaib A, Mazzara M, Distefano S. Hyperspectral Imaging for Bloodstain Identification. SENSORS 2021; 21:s21093045. [PMID: 33925330 PMCID: PMC8123592 DOI: 10.3390/s21093045] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 04/21/2021] [Accepted: 04/25/2021] [Indexed: 11/16/2022]
Abstract
Blood is key evidence to reconstruct crime scenes in forensic sciences. Blood identification can help to confirm a suspect, and for that reason, several chemical methods are used to reconstruct the crime scene however, these methods can affect subsequent DNA analysis. Therefore, this study presents a non-destructive method for bloodstain identification using Hyperspectral Imaging (HSI, 397-1000 nm range). The proposed method is based on the visualization of heme-components bands in the 500-700 nm spectral range. For experimental and validation purposes, a total of 225 blood (different donors) and non-blood (protein-based ketchup, rust acrylic paint, red acrylic paint, brown acrylic paint, red nail polish, rust nail polish, fake blood, and red ink) samples (HSI cubes, each cube is of size 1000 × 512 × 224, in which 1000 × 512 are the spatial dimensions and 224 spectral bands) were deposited on three substrates (white cotton fabric, white tile, and PVC wall sheet). The samples are imaged for up to three days to include aging. Savitzky Golay filtering has been used to highlight the subtle bands of all samples, particularly the aged ones. Based on the derivative spectrum, important spectral bands were selected to train five different classifiers (SVM, ANN, KNN, Random Forest, and Decision Tree). The comparative analysis reveals that the proposed method outperformed several state-of-the-art methods.
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Affiliation(s)
- Maheen Zulfiqar
- Department of Computer Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan 64200, Pakistan; (M.Z.); (A.S.)
| | - Muhammad Ahmad
- Department of Computer Science, National University of Computer and Emerging Sciences, Islamabad, Chiniot-Faisalabad Campus, Chiniot 35400, Pakistan
- Dipartimento di Matematica e Informatica-MIFT, University of Messina, 98121 Messina, Italy;
- Correspondence:
| | - Ahmed Sohaib
- Department of Computer Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan 64200, Pakistan; (M.Z.); (A.S.)
| | - Manuel Mazzara
- Institute of Software Development and Engineering, Innopolis University, 420500 Innopolis, Russia;
| | - Salvatore Distefano
- Dipartimento di Matematica e Informatica-MIFT, University of Messina, 98121 Messina, Italy;
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Beć KB, Grabska J, Huck CW. Principles and Applications of Miniaturized Near-Infrared (NIR) Spectrometers. Chemistry 2021; 27:1514-1532. [PMID: 32820844 PMCID: PMC7894516 DOI: 10.1002/chem.202002838] [Citation(s) in RCA: 95] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 08/20/2020] [Indexed: 12/16/2022]
Abstract
This review article focuses on the principles and applications of miniaturized near-infrared (NIR) spectrometers. This technology and its applicability has advanced considerably over the last few years and revolutionized several fields of application. What is particularly remarkable is that the applications have a distinctly diverse nature, ranging from agriculture and the food sector, through to materials science, industry and environmental studies. Unlike a rather uniform design of a mature benchtop FTNIR spectrometer, miniaturized instruments employ diverse technological solutions, which have an impact on their operational characteristics. Continuous progress leads to new instruments appearing on the market. The current focus in analytical NIR spectroscopy is on the evaluation of the devices and associated methods, and to systematic characterization of their performance profiles.
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Affiliation(s)
- Krzysztof B. Beć
- Institute of Analytical Chemistry and RadiochemistryCCB-Center for Chemistry and BiomedicineLeopold-Franzens UniversityInnrain 80/826020InnsbruckAustria
| | - Justyna Grabska
- Institute of Analytical Chemistry and RadiochemistryCCB-Center for Chemistry and BiomedicineLeopold-Franzens UniversityInnrain 80/826020InnsbruckAustria
| | - Christian W. Huck
- Institute of Analytical Chemistry and RadiochemistryCCB-Center for Chemistry and BiomedicineLeopold-Franzens UniversityInnrain 80/826020InnsbruckAustria
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Das T, Harshey A, Nigam K, Yadav VK, Srivastava A. Analytical approaches for bloodstain aging by vibrational spectroscopy: Current trends and future perspectives. Microchem J 2020. [DOI: 10.1016/j.microc.2020.105278] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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20
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Bloodstain age estimation through infrared spectroscopy and Chemometric models. Sci Justice 2020; 60:538-546. [DOI: 10.1016/j.scijus.2020.07.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 07/06/2020] [Accepted: 07/11/2020] [Indexed: 12/17/2022]
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Al-Hetlani E, Halámková L, Amin MO, Lednev IK. Differentiating smokers and nonsmokers based on Raman spectroscopy of oral fluid and advanced statistics for forensic applications. JOURNAL OF BIOPHOTONICS 2020; 13:e201960123. [PMID: 31702875 DOI: 10.1002/jbio.201960123] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 10/26/2019] [Accepted: 11/06/2019] [Indexed: 06/10/2023]
Abstract
Raman spectroscopy has proven to be a valuable tool for analyzing various types of forensic evidence such as traces of body fluids. In this work, Raman spectroscopy was employed as a nondestructive technique for the analysis of dry traces of oral fluid to differentiate between smoker and nonsmoker donors with the aid of advanced statistical tools. A total of 32 oral fluid samples were collected from donors of differing gender, age and race and were subjected to Raman spectroscopic analysis. A genetic algorithm was used to determine eight spectral regions that contribute the most to the differentiation of smokers and nonsmokers. Thereafter, a classification model was developed based on the artificial neural network that showed 100% accuracy after external validation. The developed approach demonstrates great potential for the differentiation of smokers and nonsmokers based on the analysis of dry traces of oral fluid.
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Affiliation(s)
- Entesar Al-Hetlani
- Department of Chemistry, Faculty of Science, Kuwait University, Safat, Kuwait
| | - Lenka Halámková
- Department of Chemistry, University at Albany, SUNY, Albany, New York
| | - Mohamed O Amin
- Department of Chemistry, Faculty of Science, Kuwait University, Safat, Kuwait
| | - Igor K Lednev
- Department of Chemistry, University at Albany, SUNY, Albany, New York
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25
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Abstract
This is a review of relevant Raman spectroscopy (RS) techniques and their use in structural biology, biophysics, cells, and tissues imaging towards development of various medical diagnostic tools, drug design, and other medical applications. Classical and contemporary structural studies of different water-soluble and membrane proteins, DNA, RNA, and their interactions and behavior in different systems were analyzed in terms of applicability of RS techniques and their complementarity to other corresponding methods. We show that RS is a powerful method that links the fundamental structural biology and its medical applications in cancer, cardiovascular, neurodegenerative, atherosclerotic, and other diseases. In particular, the key roles of RS in modern technologies of structure-based drug design are the detection and imaging of membrane protein microcrystals with the help of coherent anti-Stokes Raman scattering (CARS), which would help to further the development of protein structural crystallography and would result in a number of novel high-resolution structures of membrane proteins—drug targets; and, structural studies of photoactive membrane proteins (rhodopsins, photoreceptors, etc.) for the development of new optogenetic tools. Physical background and biomedical applications of spontaneous, stimulated, resonant, and surface- and tip-enhanced RS are also discussed. All of these techniques have been extensively developed during recent several decades. A number of interesting applications of CARS, resonant, and surface-enhanced Raman spectroscopy methods are also discussed.
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26
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Huang S, Wang P, Tian Y, Bai P, Chen D, Wang C, Chen J, Liu Z, Zheng J, Yao W, Li J, Gao J. Blood species identification based on deep learning analysis of Raman spectra. BIOMEDICAL OPTICS EXPRESS 2019; 10:6129-6144. [PMID: 31853390 PMCID: PMC6913418 DOI: 10.1364/boe.10.006129] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 10/29/2019] [Accepted: 10/30/2019] [Indexed: 05/15/2023]
Abstract
Blood analysis is an indispensable means of detection in criminal investigation, customs security and quarantine, anti-poaching of wildlife, and other incidents. Detecting the species of blood is one of the most important analyses. In order to classify species by analyzing Raman spectra of blood, a recognition method based on deep learning principle is proposed in this paper. This method can realize multi-identification blood species, by constructing a one-dimensional convolution neural network and establishing a Raman spectra database containing 20 kinds of blood. The network model is obtained through training, and then is employed to predict the testing set data. The average accuracy of blind detection is more than 97%. In this paper, we try to increase the diversity of data to improve the robustness of the model, optimize the network and adjust the hyperparameters to improve the recognition ability of the model. The evaluation results show that the deep learning model has high recognition performance to distinguish the species of blood.
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Affiliation(s)
- Shan Huang
- School of Electronic and Optical Engineering, Nanjing University of Science and Technology, Jiangsu 210094, China
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - Peng Wang
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - Yubing Tian
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - Pengli Bai
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | | | - Ce Wang
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - JianSheng Chen
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - ZhaoBang Liu
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - Jian Zheng
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - WenMing Yao
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
| | - JianXin Li
- School of Electronic and Optical Engineering, Nanjing University of Science and Technology, Jiangsu 210094, China
| | - Jing Gao
- Jiangsu Key Laboratory of Medical Optics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences Suzhou, Jiangsu 215163, China
- Suzhou Guoke Medical Science & Technology Development Co. Ltd., Suzhou, 215163, China
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Phenotype profiling for forensic purposes: Nondestructive potentially on scene attenuated total reflection Fourier transform-infrared (ATR FT-IR) spectroscopy of bloodstains. Forensic Chem 2019. [DOI: 10.1016/j.forc.2019.100176] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Takamura A, Halamkova L, Ozawa T, Lednev IK. Phenotype Profiling for Forensic Purposes: Determining Donor Sex Based on Fourier Transform Infrared Spectroscopy of Urine Traces. Anal Chem 2019; 91:6288-6295. [PMID: 30986037 DOI: 10.1021/acs.analchem.9b01058] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Forensic science is an important field of analytical chemistry where vibrational spectroscopy, in particular Fourier transform infrared spectroscopy and Raman spectroscopy, present advantages as they have a nondestructive nature, high selectivity, and no need for sample preparation. Herein, we demonstrate a method for determination of donor sex, based on attenuated total reflection Fourier transform infrared (ATR FT-IR) spectroscopy of dry urine traces. Trace body fluid evidence is of special importance to the modern criminal investigation as a source of individualizing DNA evidence. However, individual identification of a urine donor is generally difficult because of the small amount of DNA. Therefore, the development of an innovative method to provide phenotype information about the urine donor-including sex-is highly desirable. In this study, we developed a multivariate discriminant model for the ATR FT-IR spectra of dry urine to identify the donor sex. Rigorous selection of significant wavenumbers on the spectrum using a genetic algorithm enabled superb discrimination performance for the model and conclusively indicated a chemical origin for donor sex differences, which was supported by physiological knowledge. Although further investigations need to be conducted, this proof-of-concept study demonstrates the great potential of the developed methodology for phenotype profiling based on the analysis of urine traces.
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Affiliation(s)
- Ayari Takamura
- Department of Chemistry, Graduate School of Science , The University of Tokyo , 7-3-1, Hongo , Bunkyo, Tokyo 113-0033 , Japan.,First Department of Forensic Science , National Research Institute of Police Science , 6-3-1, Kashiwanoha , Kashiwa , Chiba 277-0882 , Japan
| | - Lenka Halamkova
- Department of Chemistry , University at Albany, SUNY , 1400 Washington Avenue , Albany , New York 12222 , United States
| | - Takeaki Ozawa
- Department of Chemistry, Graduate School of Science , The University of Tokyo , 7-3-1, Hongo , Bunkyo, Tokyo 113-0033 , Japan
| | - Igor K Lednev
- Department of Chemistry , University at Albany, SUNY , 1400 Washington Avenue , Albany , New York 12222 , United States
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Fikiet MA, Khandasammy SR, Mistek E, Ahmed Y, Halámková L, Bueno J, Lednev IK. Forensics: evidence examination via Raman spectroscopy. PHYSICAL SCIENCES REVIEWS 2019. [DOI: 10.1515/psr-2017-0049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Abstract
Forensic science can be broadly defined as the application of any of the scientific method to solving a crime. Within forensic science there are many different disciplines, however, for the majority of them, five main concepts shape the nature of forensic examination: transfer, identification, classification/individualization, association, and reconstruction. The concepts of identification, classification/individualization, and association rely greatly on analytical chemistry techniques. It is, therefore, no stretch to see how one of the rising stars of analytical chemistry techniques, Raman spectroscopy, could be of use. Raman spectroscopy is known for needing a small amount of sample, being non-destructive, and very substance specific, all of which make it ideal for analyzing crime scene evidence. The purpose of this chapter is to show the state of new methods development for forensic applications based on Raman spectroscopy published between 2015 and 2017.
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Doty KC, Lednev IK. Differentiating Donor Age Groups Based on Raman Spectroscopy of Bloodstains for Forensic Purposes. ACS CENTRAL SCIENCE 2018; 4:862-867. [PMID: 30062114 PMCID: PMC6062834 DOI: 10.1021/acscentsci.8b00198] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Indexed: 05/21/2023]
Abstract
Developments in analytical chemistry technologies and portable instrumentation over the past decade have contributed significantly to a variety of applications ranging from point of care testing to industrial process control. In particular, Raman spectroscopy has advanced for analyzing various types of evidence for forensic purposes. Extracting phenotypic information (e.g., sex, race, age, etc.) from body fluid traces is highly desirable for criminal investigations. Identifying the chronological age (CA) of a blood donor can provide significant assistance to detectives. In this proof-of-concept study, Raman spectroscopy and chemometrics have been used to analyze blood from human donors, and differentiate between them based on their CA [i.e., newborns (CA of <1 year), adolescents (CA of 11-13 years), and adults (CA of 43-68 years)]. A support vector machines discriminant analysis (SVMDA) model was constructed, which demonstrated high accuracy in correctly predicting blood donors' age groups where the lowest cross-validated sensitivity and specificity values were 0.96 and 0.97, respectively. Overall, this preliminary study demonstrates the high selectivity of Raman spectroscopy for differentiating between blood donors based on their CA. The demonstrated capability completes our suite of phenotype profiling methodologies including the determination of sex and race. CA determination has particular importance since this characteristic cannot be determined through DNA profiling unlike sex and race. When completed, the developed methodology should allow for phenotype profiling based on dry traces of body fluids immediately at the scene of a crime. The availability of this information within the first few hours since the crime discovery could be invaluable for the investigation.
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32
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Doty KC, Lednev IK. Raman spectroscopy for forensic purposes: Recent applications for serology and gunshot residue analysis. Trends Analyt Chem 2018. [DOI: 10.1016/j.trac.2017.12.003] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Khandasammy SR, Fikiet MA, Mistek E, Ahmed Y, Halámková L, Bueno J, Lednev IK. Bloodstains, paintings, and drugs: Raman spectroscopy applications in forensic science. Forensic Chem 2018. [DOI: 10.1016/j.forc.2018.02.002] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Atkins CG, Buckley K, Blades MW, Turner RFB. Raman Spectroscopy of Blood and Blood Components. APPLIED SPECTROSCOPY 2017; 71:767-793. [PMID: 28398071 DOI: 10.1177/0003702816686593] [Citation(s) in RCA: 132] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Blood is a bodily fluid that is vital for a number of life functions in animals. To a first approximation, blood is a mildly alkaline aqueous fluid (plasma) in which a large number of free-floating red cells (erythrocytes), white cells (leucocytes), and platelets are suspended. The primary function of blood is to transport oxygen from the lungs to all the cells of the body and move carbon dioxide in the return direction after it is produced by the cells' metabolism. Blood also carries nutrients to the cells and brings waste products to the liver and kidneys. Measured levels of oxygen, nutrients, waste, and electrolytes in blood are often used for clinical assessment of human health. Raman spectroscopy is a non-destructive analytical technique that uses the inelastic scattering of light to provide information on chemical composition, and hence has a potential role in this clinical assessment process. Raman spectroscopic probing of blood components and of whole blood has been on-going for more than four decades and has proven useful in applications ranging from the understanding of hemoglobin oxygenation, to the discrimination of cancerous cells from healthy lymphocytes, and the forensic investigation of crime scenes. In this paper, we review the literature in the field, collate the published Raman spectroscopy studies of erythrocytes, leucocytes, platelets, plasma, and whole blood, and attempt to draw general conclusions on the state of the field.
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Affiliation(s)
- Chad G Atkins
- 1 Michael Smith Laboratories, The University of British Columbia, Canada
- 2 Department of Chemistry, The University of British Columbia, Canada
| | - Kevin Buckley
- 1 Michael Smith Laboratories, The University of British Columbia, Canada
- 3 Nanoscale Biophotonics Laboratory, National University of Ireland, Ireland
| | - Michael W Blades
- 2 Department of Chemistry, The University of British Columbia, Canada
| | - Robin F B Turner
- 1 Michael Smith Laboratories, The University of British Columbia, Canada
- 2 Department of Chemistry, The University of British Columbia, Canada
- 4 Department of Electrical and Computer Engineering, The University of British Columbia, Canada
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Muro CK, Lednev IK. Race Differentiation Based on Raman Spectroscopy of Semen Traces for Forensic Purposes. Anal Chem 2017; 89:4344-4348. [DOI: 10.1021/acs.analchem.7b00106] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Claire K. Muro
- Chemistry Department, University at Albany, 1400 Washington Avenue, Albany, New York 12222, United States
| | - Igor K. Lednev
- Chemistry Department, University at Albany, 1400 Washington Avenue, Albany, New York 12222, United States
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Sikirzhytskaya A, Sikirzhytski V, Lednev IK. Determining Gender by Raman Spectroscopy of a Bloodstain. Anal Chem 2017; 89:1486-1492. [PMID: 28208285 DOI: 10.1021/acs.analchem.6b02986] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The development of novel methods for forensic science is a constantly growing area of modern analytical chemistry. Raman spectroscopy is one of a few analytical techniques capable of nondestructive and nearly instantaneous analysis of a wide variety of forensic evidence, including body fluid stains, at the scene of a crime. In this proof-of-concept study, Raman microspectroscopy was utilized for gender identification based on dry bloodstains. Raman spectra were acquired in mapping mode from multiple spots on a bloodstain to account for intrinsic sample heterogeneity. The obtained Raman spectroscopic data showed highly similar spectroscopic features for female and male blood samples. Nevertheless, support vector machines (SVM) and artificial neuron network (ANN) statistical methods applied to the spectroscopic data allowed for differentiating between male and female bloodstains with high confidence. More specifically, the statistical approach based on a genetic algorithm (GA) coupled with an ANN classification showed approximately 98% gender differentiation accuracy for individual bloodstains. These results demonstrate the great potential of the developed method for forensic applications, although more work is needed for method validation. When this method is fully developed, a portable Raman instrument could be used for the infield identification of traces of body fluids and to obtain phenotypic information about the donor, including gender and race, as well as for the analysis of a variety of other types of forensic evidence.
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Affiliation(s)
- Aliaksandra Sikirzhytskaya
- Department of Chemistry, University at Albany, SUNY , 1400 Washington Avenue, Albany, New York 12222, United States
| | - Vitali Sikirzhytski
- Department of Chemistry, University at Albany, SUNY , 1400 Washington Avenue, Albany, New York 12222, United States
| | - Igor K Lednev
- Department of Chemistry, University at Albany, SUNY , 1400 Washington Avenue, Albany, New York 12222, United States
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Muro CK, de Souza Fernandes L, Lednev IK. Sex Determination Based on Raman Spectroscopy of Saliva Traces for Forensic Purposes. Anal Chem 2016; 88:12489-12493. [PMID: 28193029 DOI: 10.1021/acs.analchem.6b03988] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The forensic analysis of body fluids has made great strides in recent years. Body fluids can easily be identified, and DNA analysis can be used to link a stain found at a crime scene to a specific person. When no reference DNA profile is available and the recovered DNA does not yield a match in a database, it would be incredibly useful if the evidence could still provide investigators with useful information. Biocatalytic and immunoassays can be used to determine a donor's sex, race, and other phenotypic characteristics. However, these tests depend on chemical reactions and are destructive to the sample. Here, we used Raman spectroscopy and multivariate data analysis to develop a nondestructive technique that could be used at a crime scene to determine the sex of a saliva donor. Our internally cross-validated classification model correctly identified 44 (92%) of the 48 donors used for model training. Subsequent external validation correctly identified 11 (92%) of the 12 donors saved for testing. This proof-of-concept study demonstrates the value of Raman spectroscopy as a forensic tool, and indicates that it can be used to elucidate phenotypic information about a body fluid donor. Future studies will expand to other body fluids and additional donor characteristics, such as race and age.
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Affiliation(s)
- Claire K Muro
- Chemistry Department, University at Albany , 1400 Washington Avenue, Albany, New York 12222, United States
| | - Luciana de Souza Fernandes
- Chemistry Department, University at Albany , 1400 Washington Avenue, Albany, New York 12222, United States
| | - Igor K Lednev
- Chemistry Department, University at Albany , 1400 Washington Avenue, Albany, New York 12222, United States
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Identification of individual red blood cells by Raman microspectroscopy for forensic purposes: in search of a limit of detection. Anal Bioanal Chem 2016; 409:287-293. [PMID: 27783126 DOI: 10.1007/s00216-016-0002-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Revised: 08/26/2016] [Accepted: 10/04/2016] [Indexed: 10/20/2022]
Abstract
Traces of body fluids can be present at a variety of crime scenes. It is important that forensic investigators have a reliable and nondestructive method of identifying these traces. Of equal importance is establishing the limitations of any method in use, including its detection limit. We have previously reported on the use of Raman microspectroscopy and multivariate data analysis to identify and differentiate body fluids. While many studies use serial dilutions to establish limits of detection, we utilized a different approach and demonstrated that a single red blood cell is sufficient to be correctly identified as blood. The experimental Raman spectra of individual red blood cells were loaded into the previously reported models for body fluid identification, and all were correctly classified as peripheral blood. These results demonstrate that our model can be used to identify peripheral blood, even if there is only a single red blood cell present. Furthermore, a single red blood cell is 5000× smaller than the amount of peripheral blood required to perform DNA analysis in a modern crime laboratory. This means that if a bloodstain is large enough for DNA analysis, Raman microspectroscopy should be able to make a positive identification. Considering that the sample analysis reported here was carried out with a different instrument, not the one used for the previously reported method development, these results also represent a form of method validation. The model's ability to correctly classify spectra acquired on a different instrumental platform is crucial in preparing it for practical application. Graphical Abstract Peripheral blood is of great interest in forensic sciences. While many tests are available for the identification of peripheral blood at a crime scene, most are presumptive and destructive. Here we present results that show our new, nondestructive method can identify peripheral blood using as little as a single red blood cell.
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