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For: Wang L, Ye H, Sun D, Meng T, Cao L, Wu M, Zhao M, Wang Y, Chen B, Xu X, Wang G, Hao H. Metabolic Pathway Extension Approach for Metabolomic Biomarker Identification. Anal Chem 2016;89:1229-1237. [PMID: 27983783 DOI: 10.1021/acs.analchem.6b03757] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Number Cited by Other Article(s)
1
Yan T, Nie L, Hao H. Reverse metabolomics as a novel strategy to annotate the human metabolome. Chin J Nat Med 2024;22:289-290. [PMID: 38658091 DOI: 10.1016/s1875-5364(24)60589-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Indexed: 04/26/2024]
2
Chen YC, Wu HY, Wu WS, Hsu JY, Chang CW, Lee YH, Liao PC. Identification of Xenobiotic Biotransformation Products Using Mass Spectrometry-Based Metabolomics Integrated with a Structural Elucidation Strategy by Assembling Fragment Signatures. Anal Chem 2023;95:14279-14287. [PMID: 37713273 PMCID: PMC10538286 DOI: 10.1021/acs.analchem.3c02419] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 09/01/2023] [Indexed: 09/17/2023]
3
Sun X, Xia Y, Zhao X, Wang X, Zhang Y, Jia Z, Zheng F, Li Z, Zhang X, Zhao C, Lu X, Xu G. Deep Characterization of Serum Metabolome Based on the Segment-Optimized Spectral-Stitching Direct-Infusion Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Approach. Anal Chem 2023. [PMID: 37406615 DOI: 10.1021/acs.analchem.2c04995] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/07/2023]
4
Guo R, Zhang Y, Liao Y, Yang Q, Xie T, Fan X, Lin Z, Chen Y, Lu H, Zhang Z. Highly accurate and large-scale collision cross sections prediction with graph neural networks. Commun Chem 2023;6:139. [PMID: 37402835 DOI: 10.1038/s42004-023-00939-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 06/23/2023] [Indexed: 07/06/2023]  Open
5
Zhang Y, Huang Y, Fan J, Zhang M, Hasan A, Yi Y, Yu R, Zhou X, Ye M, Qiao X. Expanding the Scope of Targeted Metabolomics by One-pot Microscale Synthesis and Tailored Metabolite Profiling: Investigation of Bile Acid–Amino Acid Conjugates. Anal Chem 2022;94:16596-16603. [DOI: 10.1021/acs.analchem.2c02086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
6
Wang HY, Qu C, Li MN, Li CR, Liu RZ, Guo Z, Li P, Gao W, Yang H. Time-Series-Dependent Global Data Filtering Strategy for Mining and Profiling of Xenobiotic Metabolites in a Dynamic Complex Matrix: Application to Biotransformation of Flavonoids in the Extract of Ginkgo biloba by Gut Microbiota. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022;70:14386-14394. [PMID: 36331925 DOI: 10.1021/acs.jafc.2c03080] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
7
Cao Y, Li W, Gong X, Niu X, Zheng J, Yu J, Li J, Tu P, Song Y. Widely quasi-quantitative analysis enables temporal bile acids-targeted metabolomics in rat after oral administration of ursodeoxycholic acid. Anal Chim Acta 2022;1212:339885. [DOI: 10.1016/j.aca.2022.339885] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Accepted: 04/28/2022] [Indexed: 12/12/2022]
8
Eroglu EC, Kucukgoz Gulec U, Vardar MA, Paydas S. GC-MS based metabolite fingerprinting of serous ovarian carcinoma and benign ovarian tumor. EUROPEAN JOURNAL OF MASS SPECTROMETRY (CHICHESTER, ENGLAND) 2022;28:12-24. [PMID: 35503418 DOI: 10.1177/14690667221098520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
9
Zheng X, Cai X, Hao H. Emerging targetome and signalome landscape of gut microbial metabolites. Cell Metab 2022;34:35-58. [PMID: 34986337 DOI: 10.1016/j.cmet.2021.12.011] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
10
Beniddir MA, Kang KB, Genta-Jouve G, Huber F, Rogers S, van der Hooft JJJ. Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches. Nat Prod Rep 2021;38:1967-1993. [PMID: 34821250 PMCID: PMC8597898 DOI: 10.1039/d1np00023c] [Citation(s) in RCA: 67] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Indexed: 12/13/2022]
11
Functional Metabolomics and Chemoproteomics Approaches Reveal Novel Metabolic Targets for Anticancer Therapy. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021;1280:131-147. [PMID: 33791979 DOI: 10.1007/978-3-030-51652-9_9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
12
Liu X, Li J, Feng S, Liu X, Zhao P, Zhao D, Du Y, Zhang H. A high-resolution MS/MS based strategy to improve xenobiotic metabolites analysis by metabolic pathway extension searching combined with parallel reaction monitoring: Flavonoid metabolism in wound site as a case. J Chromatogr B Analyt Technol Biomed Life Sci 2021;1162:122470. [PMID: 33370687 DOI: 10.1016/j.jchromb.2020.122470] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2020] [Revised: 09/25/2020] [Accepted: 11/19/2020] [Indexed: 11/25/2022]
13
Zhang Y, Zuo C, Han L, Liu X, Chen W, Wang J, Gui S, Peng C, Peng D. Uterine Metabolomics Reveals Protection of Taohong Siwu Decoction Against Abnormal Uterine Bleeding. Front Pharmacol 2020;11:507113. [PMID: 33041788 PMCID: PMC7518030 DOI: 10.3389/fphar.2020.507113] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 08/12/2020] [Indexed: 12/19/2022]  Open
14
Liu FJ, Jiang Y, Li P, Liu YD, Xin GZ, Yao ZP, Li HJ. Diagnostic fragmentation-assisted mass spectral networking coupled with in silico dereplication for deep annotation of steroidal alkaloids in medicinal Fritillariae Bulbus. JOURNAL OF MASS SPECTROMETRY : JMS 2020;55:e4528. [PMID: 32559823 DOI: 10.1002/jms.4528] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/03/2020] [Accepted: 04/07/2020] [Indexed: 06/11/2023]
15
Hou Y, He D, Ye L, Wang G, Zheng Q, Hao H. An improved detection and identification strategy for untargeted metabolomics based on UPLC-MS. J Pharm Biomed Anal 2020;191:113531. [PMID: 32889345 DOI: 10.1016/j.jpba.2020.113531] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 08/03/2020] [Accepted: 08/04/2020] [Indexed: 11/29/2022]
16
Li MN, Wang HY, Wang R, Li CR, Shen BQ, Gao W, Li P, Yang H. A modified data filtering strategy for targeted characterization of polymers in complex matrixes using drift tube ion mobility-mass spectrometry: Application to analysis of procyanidins in the grape seed extracts. Food Chem 2020;321:126693. [DOI: 10.1016/j.foodchem.2020.126693] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 03/24/2020] [Accepted: 03/24/2020] [Indexed: 12/25/2022]
17
Wu ZT, Li ZQ, Shi W, Wang LL, Jiang Y, Li P, Li HJ. The crucial role of metabolic regulation in differential hepatotoxicity induced by furanoids in Dioscorea bulbifera. Chin J Nat Med 2020;18:57-69. [PMID: 31955824 DOI: 10.1016/s1875-5364(20)30005-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2019] [Indexed: 01/31/2023]
18
Chen H, Hao S, Chen Z, O-Thong S, Fan J, Clark J, Luo G, Zhang S. Mesophilic and thermophilic anaerobic digestion of aqueous phase generated from hydrothermal liquefaction of cornstalk: Molecular and metabolic insights. WATER RESEARCH 2020;168:115199. [PMID: 31655439 DOI: 10.1016/j.watres.2019.115199] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 10/10/2019] [Accepted: 10/15/2019] [Indexed: 06/10/2023]
19
Kwak M, Kang K, Wang Y. Methods of Metabolite Identification Using MS/MS Data. JOURNAL OF COMPUTER INFORMATION SYSTEMS 2019. [DOI: 10.1080/08874417.2019.1681328] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
20
Wu G, Zhang W, Li H. Application of metabolomics for unveiling the therapeutic role of traditional Chinese medicine in metabolic diseases. JOURNAL OF ETHNOPHARMACOLOGY 2019;242:112057. [PMID: 31279867 DOI: 10.1016/j.jep.2019.112057] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 06/12/2019] [Accepted: 07/03/2019] [Indexed: 05/09/2023]
21
Ji H, Xu Y, Lu H, Zhang Z. Deep MS/MS-Aided Structural-Similarity Scoring for Unknown Metabolite Identification. Anal Chem 2019;91:5629-5637. [DOI: 10.1021/acs.analchem.8b05405] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
22
Li Q, Cao L, Tian Y, Zhang P, Ding C, Lu W, Jia C, Shao C, Liu W, Wang D, Ye H, Hao H. Butyrate Suppresses the Proliferation of Colorectal Cancer Cells via Targeting Pyruvate Kinase M2 and Metabolic Reprogramming. Mol Cell Proteomics 2018;17:1531-1545. [PMID: 29739823 DOI: 10.1074/mcp.ra118.000752] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2018] [Revised: 04/24/2018] [Indexed: 01/28/2023]  Open
23
Barnaba C, Dellacassa E, Nicolini G, Nardin T, Serra M, Larcher R. Non-targeted glycosidic profiling of international wines using neutral loss-high resolution mass spectrometry. J Chromatogr A 2018;1557:75-89. [PMID: 29748090 DOI: 10.1016/j.chroma.2018.05.008] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 03/04/2018] [Accepted: 05/03/2018] [Indexed: 01/28/2023]
24
Yu D, Zhou L, Xuan Q, Wang L, Zhao X, Lu X, Xu G. Strategy for Comprehensive Identification of Acylcarnitines Based on Liquid Chromatography–High-Resolution Mass Spectrometry. Anal Chem 2018;90:5712-5718. [DOI: 10.1021/acs.analchem.7b05471] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
25
Shi W, Ling J, Jiang LL, Zhao DS, Wang LL, Wu ZT, Li P, Wei YJ, Li HJ. Metabolism of five diterpenoid lactones from Dioscorea bulbifera tubers in zebrafish. RSC Adv 2018;8:7765-7773. [PMID: 35539098 PMCID: PMC9078502 DOI: 10.1039/c7ra12910f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 02/12/2018] [Indexed: 11/21/2022]  Open
26
Global profiling combined with predicted metabolites screening for discovery of natural compounds: Characterization of ginsenosides in the leaves of Panax notoginseng as a case study. J Chromatogr A 2018;1538:34-44. [DOI: 10.1016/j.chroma.2018.01.040] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Revised: 11/17/2017] [Accepted: 01/18/2018] [Indexed: 12/16/2022]
27
Rapid identification of herbal compounds derived metabolites using zebrafish larvae as the biotransformation system. J Chromatogr A 2017;1515:100-108. [DOI: 10.1016/j.chroma.2017.07.076] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2017] [Revised: 07/17/2017] [Accepted: 07/24/2017] [Indexed: 11/24/2022]
28
Pimentel G, Burton KJ, Pralong FP, Vionnet N, Portmann R, Vergères G. The postprandial metabolome — a source of Nutritional Biomarkers of Health. Curr Opin Food Sci 2017. [DOI: 10.1016/j.cofs.2017.08.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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