Sensing Biomolecular Interactions by the Luminescence of a Planar Gold Film

Plasmonic Probing of Deoxyribonucleic Acid Hybridization at the Single Base Pair Resolution

Partial DNA duplex formation greatly impacts the quality of DNA hybridization and has been extensively studied due to its significance in many biological processes. However, traditional DNA sensing methods suffer from time-consuming amplification steps and hinder the acquisition of information about single-molecule behavior. In this work, we developed a plasmonic method to probe the hybridization process at a single base pair resolution and study the relationship between the complementarity of DNA analytes and DNA hybridization behaviors. We measured single-molecule hybridization events with Au NP-modified ssDNA probes in real time and found two hybridization adsorption events: stable and transient adsorption. The ratio of these two hybridization adsorption events was correlated with the length of the complementary sequences, distinguishing DNA analytes from different complementary sequences. By using dual incident angle excitation, we recognized different single-base complementary sequences. These results demonstrated that the plasmonic method can be applied to study partial DNA hybridization behavior and has the potential to be incorporated into the identification of similar DNA sequences, providing a sensitive and quantitative tool for DNA analysis.

Surface-enhanced coherent anti-Stokes Raman scattering of molecules near metal-dielectric nanojunctions

We discuss an experimental configuration consisting of {Au film}-molecule-{Au particle} or {Au film}-molecule-{Si particle} nanojunctions for performing wide-field surface-enhanced CARS (SE-CARS) measurements in a reproducible and controllable manner. While the allowable illumination dosage in the {Au film}-molecule-{Au particle} case is limited by the strong two-photon background from the gold, we successfully generate a detectable coherent Raman response from a molecular monolayer using the lowest reported average power densities to-date. With a vision to minimize the two-photon background and the intrinsic losses observed in all-metal plasmonic systems, we examine the possibility of using high-index dielectric particles on top of a thin metal film to generate strong nanoscopic hotspots. We demonstrate repeatable SE-CARS measurements at the {Au film}-molecule-{Si particle} heterojunction, underlining the usability of this experimental geometry. This work paves the way for the development of next-generation of chemical and biomolecular sensing assays that can minimize some of the major drawbacks encountered in fragile and lossy all-metal plasmonic systems.

Sensitive Detection of SARS-CoV-2 Using a Novel Plasmonic Fiber Optic Biosensor Design

The coronavirus (COVID-19) pandemic has put the entire world at risk and caused an economic downturn in most countries. This work provided theoretical insight into a novel fiber optic-based plasmonic biosensor that can be used for sensitive detection of SARS-CoV-2. The aim was always to achieve reliable, sensitive, and reproducible detection. The proposed configuration is based on Ag-Au alloy nanoparticle films covered with a layer of graphene which promotes the molecular adsorption and a thiol-tethered DNA layer as a ligand. Here, the combination of two recent approaches in a single configuration is very promising and can only lead to considerable improvement. We have theoretically analyzed the sensor performance in terms of sensitivity and resolution. To highlight the importance of the new configuration, a comparison was made with two other sensors. One is based on gold nanoparticles incorporated into a host medium; the other is composed of a bimetallic Ag-Au layer in the massive state. The numerical results obtained have been validated and show that the proposed configuration offers better sensitivity (7100 nm\RIU) and good resolution (figure of merit; FOM = 38.88RIU - 1 and signal-to-noise ratio; SNR = 0.388). In addition, a parametric study was performed such as the graphene layers' number and the size of the nanoparticles.

Detecting Pb2+by a 'turn-on' fluorescence sensor based on DNA functionalized magnetic nanocomposites

Sensitive and selective detection of the lead ion (Pb²⁺) plays an important role in terms of both human health and environmental protection, as the heavy metal is fairly ubiquitous and highly toxic. The highly stable fluorescence biosensor is composed of Fe₃O₄@TiO₂core-shell nanocomposites, functionalized with a carboxyl fluorescein labeled DNA. The morphology, physical and chemical properties of the sensing nanomaterials were studied by transmission electron microscopy, FT-IR spectroscopy (FT-IR), x-ray powder diffraction and vibrating sample magnetometer. UV-visible and fluorescence spectroscopy were used to characterize the fluorescein functionalized magnetic nanoparticles. The performance of Pb²⁺detection displayed an excellent linearity (R² = 0.995) in the range of 10^-10to 5 × 10^-9ppm with a detection limit of 10^-10ppm, based on the optimization of the fabrication process and aptamers' specification. The fluorescence biosensor has an accurate response, excellent recoveries and high adsorbent capacities. It was successfully applied for the determination of Pb²⁺in contaminated water and serum samples; the detection of limit in both media were 10^-10ppm. These features ensure the potential use of aptamer functionalized magnetic nanocomposites as a new class of non-toxic biocompatible sensors for biological and environmental applications.

Current status, advances, challenges and perspectives on biosensors for COVID-19 diagnosis in resource-limited settings

As the COVID-19 pandemic has profoundly impacted human life, prompt diagnostic tests are becoming an essential part of the social activities. However, the expensive and time-consuming laboratory-based traditional methods do not suffice the enormous needs for massive number of tests, especially in resource-limited settings. Therefore, more affordable, rapid, sensitive and specific field-practical diagnostic devices play an important role in the fight against the disease. In this review, we present the current status and advances in the biosensing technologies for diagnosing COVID-19, ranging from commercial achievements to research developments. Starting from a brief introduction to the disease biomarkers, this review summarizes the working principles of the biosensing technologies, followed by a review of the commercial products and research advances in academia. We recapitulate the literatures with a wide scope of bio/marker detections, embracing nucleic acids, viral proteins, human immune responses, and other potential bio/markers. Further, the challenges and perspectives for their employment in future point-of-care applications are discussed, with an extended appraisal on the practical strategies to enlarge the testing capability without high cost. This critical review provides a comprehensive insight into the diagnostic tools for COVID-19 and will encourage the industry and academia in the field of diagnostic biosensing for future evolvement to large-scale point-of-care screening of COVID-19.

Numerical Analysis of a Highly Sensitive Surface Plasmon Resonance Sensor for SARS-CoV-2 Detection

In this paper, we propose a surface plasmon resonance (SPR) structure based on Kretschmann configuration incorporating layers of silicon and BaTiO₃ on top of Ag for real-time detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) using thiol-tethered DNA as a ligand. Extensive numerical analysis based on transfer matrix theory as well as finite-difference time-domain (FDTD) technique has been performed to characterize the sensor response considering sensitivity, full width at half maxima, and minimum reflection. About 7.6 times enhanced sensitivity has been obtained using the proposed architecture for SARS-CoV-2 detection, compared to the basic Kretschmann configuration. Notably, the structure provides consistent enhancement over other competitive SPR structures for both angular and wavelength interrogations with a figure-of-merit of 692.28. Additionally, we repeated simulations for various ligate-ligand pairs to assess the range of applicability and robust performance improvement has been observed. As a result, the proposed sensor design provides a suitable configuration for highly sensitive, rapid, noninvasive biosensing which can be useful if adopted in experimental sensing protocols.

A simple method to estimate the mean number of lipophilic molecules on nanoparticle surfaces by fluorescence measurements

Measurements of fluorescence intensity of the hydrophobic pyridinium salt (DTPSH) remaining in the organic phase after partition experiments in the DCM/H₂O system allowed an approximate method to be developed to estimate the mean number of molecules (N = 942) on the surface of 22.8 nm gold nanoparticles and the separation (1.89 nm) between these organic molecules. This protocol is based on the ability that the organic molecules possess to coat the surface of the nanoparticle, which can migrate from the organic to the aqueous phase as a result of the driving force of the strong binding of sulfur to gold. To validate our estimation, we used a projection of the results obtained by Wales and Ulker to solve the Thomson problem, a mathematicians' challenge, used as a model to calculate the mean distance (1.82 nm) separating particles on the surface, in excellent agreement with the results obtained by our method. The quality of results, the simplicity of calculations, the low fluorescence detection limit, and the inexpensive materials, recommend this procedure for rapid estimates of the mean number of molecules on the surface of nanoparticles.