1
|
Bhattacharya A, Pandit S, Lee S, Ebrahimi SB, Samanta D. Modulating Enzyme Activity using Engineered Nanomaterials. Chembiochem 2024:e202400520. [PMID: 39117568 DOI: 10.1002/cbic.202400520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Revised: 08/07/2024] [Accepted: 08/08/2024] [Indexed: 08/10/2024]
Abstract
Enzymes serve as pivotal components in various biotechnological applications across several industries. Understanding enzyme inhibition sheds light on how certain compounds disrupt biochemical pathways, facilitating the design of targeted drugs for combating diseases. On the other hand, reversible inhibition or enhancement of activity can unlock new ways of controlling industrial reactions and boosting the catalytic activity of native enzymes that are taken out of their natural environments. Over the last two decades, immobilizing enzymes on nanomaterial-based solid supports has emerged as an especially promising approach for tuning enzyme activity. Nanomaterials not only inhibit enzymes but also enhance their performance, showcasing their versatility. This Concept highlights significant advancements in utilizing nanomaterials for enzyme modulation and discusses future prospects for leveraging this phenomenon in developing sophisticated molecular systems and downstream applications.
Collapse
Affiliation(s)
- Atri Bhattacharya
- Department of Chemistry, The University of Texas at Austin, 105 E 24th St, Austin, TX, 78712, USA
| | - Subrata Pandit
- Department of Chemistry, The University of Texas at Austin, 105 E 24th St, Austin, TX, 78712, USA
| | - Seungheon Lee
- Department of Chemistry, The University of Texas at Austin, 105 E 24th St, Austin, TX, 78712, USA
| | - Sasha B Ebrahimi
- Emerging Drug Delivery Platforms, Drug Product Development, GSK, 1250 S Collegeville Rd, Collegeville, PA-19426, USA
| | - Devleena Samanta
- Department of Chemistry, The University of Texas at Austin, 105 E 24th St, Austin, TX, 78712, USA
| |
Collapse
|
2
|
de Barros HR, da Silva RTP, Fernandes R, Toro-Mendoza J, Coluzza I, Temperini MLA, Cordoba de Torresi SI. Unraveling the Nano-Bio Interface Interactions of a Lipase Adsorbed on Gold Nanoparticles under Laser Excitation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:5663-5672. [PMID: 38451216 DOI: 10.1021/acs.langmuir.3c02994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/08/2024]
Abstract
The complex nature and structure of biomolecules and nanoparticles and their interactions make it challenging to achieve a deeper understanding of the dynamics at the nano-bio interface of enzymes and plasmonic nanoparticles subjected to light excitation. In this study, circular dichroism (CD) and Raman spectroscopic experiments and molecular dynamics (MD) simulations were used to investigate the potential changes at the nano-bio interface upon plasmonic excitation. Our data showed that photothermal and thermal heating induced distinct changes in the secondary structure of a model nanobioconjugate composed of lipase fromCandida antarcticafraction B (CALB) and gold nanoparticles (AuNPs). The use of a green laser led to a substantial decrease in the α-helix content of the lipase from 66% to 13% and an increase in the β-sheet content from 5% to 31% compared to the initial conformation of the nanobioconjugate. In contrast, the differences under similar thermal heating conditions were only 55% and 11%, respectively. This study revealed important differences related to the enzyme secondary structure, enzyme-nanoparticle interactions, and the stability of the enzyme catalytic triad (Ser105-Asp187-His224), influenced by the instantaneous local temperature increase generated from photothermal heating compared to the slower rate of thermal heating of the bulk. These results provide valuable insights into the interactions between biomolecules and plasmonic nanoparticles induced by photothermal heating, advancing plasmonic biocatalysis and related fields.
Collapse
Affiliation(s)
- Heloise Ribeiro de Barros
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000 São Paulo, Brasil
- CIC biomaGUNE and CIBER-BBN, Paseo de Miramón 182, Donostia-San Sebastián 2014, Spain
| | - Rafael Trivella Pacheco da Silva
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000 São Paulo, Brasil
| | - Rafaella Fernandes
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000 São Paulo, Brasil
| | - Jhoan Toro-Mendoza
- CIC biomaGUNE and CIBER-BBN, Paseo de Miramón 182, Donostia-San Sebastián 2014, Spain
- Centro de Biomedicina Molecular, Instituto Venezolano de Investigaciones Científicas, Carretera Panamericana, Km 11, Altos de Pipe, Caracas 1020, Venezuela
| | - Ivan Coluzza
- Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, United States
| | - Marcia L A Temperini
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000 São Paulo, Brasil
| | - Susana I Cordoba de Torresi
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000 São Paulo, Brasil
| |
Collapse
|
3
|
da Silva RTP, Ribeiro de Barros H, Sandrini DMF, Córdoba de Torresi SI. Stimuli-Responsive Regulation of Biocatalysis through Metallic Nanoparticle Interaction. Bioconjug Chem 2022; 33:53-66. [PMID: 34914373 DOI: 10.1021/acs.bioconjchem.1c00515] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The remote control of biocatalytic processes in an extracellular medium is an exciting idea to deliver innovative solutions in the biocatalysis field. With this purpose, metallic nanoparticles (NPs) are great candidates, as their inherent thermal, electric, magnetic, and plasmonic properties can readily be manipulated upon external stimuli. Exploring the unique NP properties beyond an anchoring platform for enzymes brings up the opportunity to extend the efficiency of biocatalysts and modulate their activity through triggered events. In this review, we discuss a set of external stimuli, such as light, electricity, magnetism, and temperature, as tools for the regulation of nanobiocatalysis, including the challenges and perspectives regarding their use. In addition, we elaborate on the use of combined stimuli that create a more refined framework in terms of a multiresponsive system. Finally, we envision this review might instigate researchers in this field of study with a set of promising opportunities in the near future.
Collapse
Affiliation(s)
- Rafael T P da Silva
- Instituto de Química, Universidade de São Paulo, São Paulo (SP), 05508-000, Brazil
| | | | | | | |
Collapse
|
4
|
Koya A, Zhu X, Ohannesian N, Yanik AA, Alabastri A, Proietti Zaccaria R, Krahne R, Shih WC, Garoli D. Nanoporous Metals: From Plasmonic Properties to Applications in Enhanced Spectroscopy and Photocatalysis. ACS NANO 2021; 15:6038-6060. [PMID: 33797880 PMCID: PMC8155319 DOI: 10.1021/acsnano.0c10945] [Citation(s) in RCA: 80] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Accepted: 03/29/2021] [Indexed: 05/04/2023]
Abstract
The field of plasmonics is capable of enabling interesting applications in different wavelength ranges, spanning from the ultraviolet up to the infrared. The choice of plasmonic material and how the material is nanostructured has significant implications for ultimate performance of any plasmonic device. Artificially designed nanoporous metals (NPMs) have interesting material properties including large specific surface area, distinctive optical properties, high electrical conductivity, and reduced stiffness, implying their potentials for many applications. This paper reviews the wide range of available nanoporous metals (such as Au, Ag, Cu, Al, Mg, and Pt), mainly focusing on their properties as plasmonic materials. While extensive reports on the use and characterization of NPMs exist, a detailed discussion on their connection with surface plasmons and enhanced spectroscopies as well as photocatalysis is missing. Here, we report on different metals investigated, from the most used nanoporous gold to mixed metal compounds, and discuss each of these plasmonic materials' suitability for a range of structural design and applications. Finally, we discuss the potentials and limitations of the traditional and alternative plasmonic materials for applications in enhanced spectroscopy and photocatalysis.
Collapse
Affiliation(s)
| | - Xiangchao Zhu
- Department
of Electrical and Computer Engineering, University of California, Santa
Cruz, California 95064, United States
| | - Nareg Ohannesian
- Department
of Electrical and Computer Engineering, University of Houston, Houston Texas 77204, United States
| | - A. Ali Yanik
- Department
of Electrical and Computer Engineering, University of California, Santa
Cruz, California 95064, United States
| | - Alessandro Alabastri
- Department
of Electrical and Computer Engineering, Rice University, Houston, Texas 77005, United States
| | - Remo Proietti Zaccaria
- Istituto
Italiano di Tecnologia, via Morego 30, I-16163 Genova, Italy
- Cixi
Institute of Biomedical Engineering, Ningbo Institute of Materials
Technology and Engineering, Chinese Academy
of Sciences, Zhejiang 315201, China
| | - Roman Krahne
- Istituto
Italiano di Tecnologia, via Morego 30, I-16163 Genova, Italy
| | - Wei-Chuan Shih
- Department
of Electrical and Computer Engineering, University of California, Santa
Cruz, California 95064, United States
| | - Denis Garoli
- Istituto
Italiano di Tecnologia, via Morego 30, I-16163 Genova, Italy
- Faculty of
Science and Technology, Free University
of Bozen, Piazza Università
5, 39100 Bolzano, Italy
| |
Collapse
|
5
|
de Barros HR, García I, Kuttner C, Zeballos N, Camargo PHC, de Torresi SIC, López-Gallego F, Liz-Marzán LM. Mechanistic Insights into the Light-Driven Catalysis of an Immobilized Lipase on Plasmonic Nanomaterials. ACS Catal 2020. [DOI: 10.1021/acscatal.0c04919] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Heloise Ribeiro de Barros
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, Vila Universitária, 05508-000 São Paulo, Brazil
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
| | - Isabel García
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
- Centro de Investigación Biomédica en Red, Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
| | - Christian Kuttner
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
| | - Nicoll Zeballos
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
| | - Pedro H. C. Camargo
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, Vila Universitária, 05508-000 São Paulo, Brazil
- Department of Chemistry, University of Helsinki, A.I. Virtasen aukio 1, Helsinki 00100, Finland
| | - Susana Inés Cordoba de Torresi
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, Vila Universitária, 05508-000 São Paulo, Brazil
| | - Fernando López-Gallego
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain
| | - Luis M. Liz-Marzán
- CIC biomaGUNE, Basque Research and Technology Alliance (BRTA), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
- Centro de Investigación Biomédica en Red, Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Paseo de Miramón 182, 20014 Donostia − San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain
| |
Collapse
|