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For: Pande A, Mokhor N, Pande J. Deamidation of Human γS-Crystallin Increases Attractive Protein Interactions: Implications for Cataract. Biochemistry 2015;54:4890-9. [PMID: 26158710 DOI: 10.1021/acs.biochem.5b00185] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Cvekl A, Vijg J. Aging of the eye: Lessons from cataracts and age-related macular degeneration. Ageing Res Rev 2024;99:102407. [PMID: 38977082 DOI: 10.1016/j.arr.2024.102407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 06/18/2024] [Accepted: 07/01/2024] [Indexed: 07/10/2024]
2
Guseman AJ, González JJ, Yang D, Gronenborn AM. Cumulative asparagine to aspartate deamidation fails to perturb γD-crystallin structure and stability. Protein Sci 2024;33:e5120. [PMID: 39022918 PMCID: PMC11255865 DOI: 10.1002/pro.5120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 06/05/2024] [Accepted: 07/07/2024] [Indexed: 07/20/2024]
3
Heath SL, Guseman AJ, Gronenborn AM, Horne WS. Probing effects of site-specific aspartic acid isomerization on structure and stability of GB1 through chemical protein synthesis. Protein Sci 2024;33:e4883. [PMID: 38143426 PMCID: PMC10868458 DOI: 10.1002/pro.4883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/18/2023] [Accepted: 12/20/2023] [Indexed: 12/26/2023]
4
Kato K, Nakayoshi T, Kitamura Y, Kurimoto E, Oda A, Ishikawa Y. Identification of the Most Impactful Asparagine Residues for γS-Crystallin Aggregation by Deamidation. Biochemistry 2023. [PMID: 37155656 DOI: 10.1021/acs.biochem.3c00097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
5
Quinlan RA, Clark JI. Insights into the biochemical and biophysical mechanisms mediating the longevity of the transparent optics of the eye lens. J Biol Chem 2022;298:102537. [PMID: 36174677 PMCID: PMC9638808 DOI: 10.1016/j.jbc.2022.102537] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 09/20/2022] [Accepted: 09/22/2022] [Indexed: 11/18/2022]  Open
6
Ruiss M, Findl O, Kronschläger M. The human lens: An antioxidant-dependent tissue revealed by the role of caffeine. Ageing Res Rev 2022;79:101664. [PMID: 35690384 DOI: 10.1016/j.arr.2022.101664] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 05/24/2022] [Accepted: 06/04/2022] [Indexed: 11/01/2022]
7
Norton-Baker B, Mehrabi P, Kwok AO, Roskamp KW, Rocha MA, Sprague-Piercy MA, von Stetten D, Miller RJD, Martin RW. Deamidation of the human eye lens protein γS-crystallin accelerates oxidative aging. Structure 2022;30:763-776.e4. [PMID: 35338852 PMCID: PMC9081212 DOI: 10.1016/j.str.2022.03.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2021] [Revised: 12/14/2021] [Accepted: 03/01/2022] [Indexed: 11/23/2022]
8
Temporal and spatial characterisation of protein liquid-liquid phase separation using NMR spectroscopy. Nat Commun 2022;13:1767. [PMID: 35365630 PMCID: PMC8976059 DOI: 10.1038/s41467-022-29408-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 03/11/2022] [Indexed: 12/15/2022]  Open
9
Yousefi R. Crystallins as Important Pathogenic Targets for Accumulation of Structural Damages Resulting in Protein Aggregation and Cataract Development: Introduction to This Special Issue of Biochemistry (Moscow). BIOCHEMISTRY. BIOKHIMIIA 2022;87:87-90. [PMID: 35508904 DOI: 10.1134/s0006297922020018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 01/29/2022] [Accepted: 01/29/2022] [Indexed: 06/14/2023]
10
Wu W, Lois N, Prescott AR, Brown AP, Van Gerwen V, Tassignon MJ, Richards SA, Saunter CD, Jarrin M, Quinlan RA. The importance of the epithelial fibre cell interface to lens regeneration in an in vivo rat model and in a human bag-in-the-lens (BiL) sample. Exp Eye Res 2021;213:108808. [PMID: 34762932 DOI: 10.1016/j.exer.2021.108808] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 10/20/2021] [Accepted: 10/22/2021] [Indexed: 12/13/2022]
11
Fahim A, Annunziata O. Effect of a Good buffer on the fate of metastable protein-rich droplets near physiological composition. Int J Biol Macromol 2021;186:519-527. [PMID: 34265335 DOI: 10.1016/j.ijbiomac.2021.07.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/01/2021] [Accepted: 07/02/2021] [Indexed: 10/20/2022]
12
Nakayoshi T, Wanita K, Kato K, Kurimoto E, Oda A. Computational analysis of nonenzymatic deamidation of asparagine residues catalysed by acetic acid. Mol Phys 2021. [DOI: 10.1080/00268976.2020.1827176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
13
Rocha MA, Sprague-Piercy MA, Kwok AO, Roskamp KW, Martin RW. Chemical Properties Determine Solubility and Stability in βγ-Crystallins of the Eye Lens. Chembiochem 2021;22:1329-1346. [PMID: 33569867 PMCID: PMC8052307 DOI: 10.1002/cbic.202000739] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 12/17/2020] [Indexed: 11/10/2022]
14
Guseman AJ, Whitley MJ, González JJ, Rathi N, Ambarian M, Gronenborn AM. Assessing the Structures and Interactions of γD-Crystallin Deamidation Variants. Structure 2020;29:284-291.e3. [PMID: 33264606 DOI: 10.1016/j.str.2020.11.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 10/12/2020] [Accepted: 11/06/2020] [Indexed: 11/25/2022]
15
Bari KJ, Sharma S. A Perspective on Biophysical Studies of Crystallin Aggregation and Implications for Cataract Formation. J Phys Chem B 2020;124:11041-11054. [PMID: 33297682 DOI: 10.1021/acs.jpcb.0c07449] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
16
Kato K, Nakayoshi T, Kurimoto E, Oda A. Mechanisms of Deamidation of Asparagine Residues and Effects of Main-Chain Conformation on Activation Energy. Int J Mol Sci 2020;21:ijms21197035. [PMID: 32987875 PMCID: PMC7582646 DOI: 10.3390/ijms21197035] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 09/19/2020] [Accepted: 09/22/2020] [Indexed: 12/14/2022]  Open
17
Vetter CJ, Thorn DC, Wheeler SG, Mundorff CC, Halverson KA, Wales TE, Shinde UP, Engen JR, David LL, Carver JA, Lampi KJ. Cumulative deamidations of the major lens protein γS-crystallin increase its aggregation during unfolding and oxidation. Protein Sci 2020;29:1945-1963. [PMID: 32697405 PMCID: PMC7454558 DOI: 10.1002/pro.3915] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Revised: 07/12/2020] [Accepted: 07/20/2020] [Indexed: 01/07/2023]
18
Ying Y, Li H. Recent progress in the analysis of protein deamidation using mass spectrometry. Methods 2020;200:42-57. [PMID: 32544593 DOI: 10.1016/j.ymeth.2020.06.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 05/15/2020] [Accepted: 06/11/2020] [Indexed: 02/06/2023]  Open
19
Fernández-Silva A, French-Pacheco L, Rivillas-Acevedo L, Amero C. Aggregation pathways of human γ D crystallin induced by metal ions revealed by time dependent methods. PeerJ 2020;8:e9178. [PMID: 32566392 PMCID: PMC7295030 DOI: 10.7717/peerj.9178] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 04/22/2020] [Indexed: 12/17/2022]  Open
20
Yang X, Xu J, Fu C, Jia Z, Yao K, Chen X. The cataract-related S39C variant increases γS-crystallin sensitivity to environmental stress by destroying the intermolecular disulfide cross-links. Biochem Biophys Res Commun 2020;526:459-465. [DOI: 10.1016/j.bbrc.2020.03.072] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 03/11/2020] [Indexed: 02/06/2023]
21
Takata T, Ha S, Koide T, Fujii N. Site-specific rapid deamidation and isomerization in human lens αA-crystallin in vitro. Protein Sci 2020;29:955-965. [PMID: 31930615 PMCID: PMC7096717 DOI: 10.1002/pro.3821] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 12/27/2019] [Accepted: 12/27/2019] [Indexed: 12/16/2022]
22
Bari KJ, Dube D, Sharma S, Chary KVR. A Molecular Dynamics Perspective To Identify Precursors to Aggregation in Human γS-Crystallin Unravels the Mechanism of Childhood Cataracts. J Phys Chem B 2019;123:10384-10393. [DOI: 10.1021/acs.jpcb.9b08195] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
Mohanty P, Agrata R, Habibullah BI, G S A, Das R. Deamidation disrupts native and transient contacts to weaken the interaction between UBC13 and RING-finger E3 ligases. eLife 2019;8:49223. [PMID: 31638574 PMCID: PMC6874479 DOI: 10.7554/elife.49223] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 10/21/2019] [Indexed: 12/25/2022]  Open
24
Forsythe HM, Vetter CJ, Jara KA, Reardon PN, David LL, Barbar EJ, Lampi KJ. Altered Protein Dynamics and Increased Aggregation of Human γS-Crystallin Due to Cataract-Associated Deamidations. Biochemistry 2019;58:4112-4124. [PMID: 31490062 PMCID: PMC10693687 DOI: 10.1021/acs.biochem.9b00593] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
25
Utility of High Resolution NMR Methods to Probe the Impact of Chemical Modifications on Higher Order Structure of Monoclonal Antibodies in Relation to Antigen Binding. Pharm Res 2019;36:130. [DOI: 10.1007/s11095-019-2652-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Accepted: 05/24/2019] [Indexed: 12/17/2022]
26
Conformational dynamics study on human γS-crystallin as an efficient route to childhood blindness. Biochem Biophys Res Commun 2019;511:679-684. [PMID: 30827504 DOI: 10.1016/j.bbrc.2019.02.124] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 02/22/2019] [Indexed: 12/27/2022]
27
Tranquet O, Larré C, Denery-Papini S. Allergic reactions to hydrolysed wheat proteins: clinical aspects and molecular structures of the allergens involved. Crit Rev Food Sci Nutr 2018;60:147-156. [PMID: 30463417 DOI: 10.1080/10408398.2018.1516622] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
28
Wang W, Roberts CJ. Protein aggregation – Mechanisms, detection, and control. Int J Pharm 2018;550:251-268. [DOI: 10.1016/j.ijpharm.2018.08.043] [Citation(s) in RCA: 100] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Revised: 08/18/2018] [Accepted: 08/20/2018] [Indexed: 12/19/2022]
29
Sadakane Y, Kawahara M. Implications of Metal Binding and Asparagine Deamidation for Amyloid Formation. Int J Mol Sci 2018;19:ijms19082449. [PMID: 30126231 PMCID: PMC6121660 DOI: 10.3390/ijms19082449] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 08/10/2018] [Accepted: 08/14/2018] [Indexed: 12/17/2022]  Open
30
Carver JA, Ecroyd H, Truscott RJW, Thorn DC, Holt C. Proteostasis and the Regulation of Intra- and Extracellular Protein Aggregation by ATP-Independent Molecular Chaperones: Lens α-Crystallins and Milk Caseins. Acc Chem Res 2018;51:745-752. [PMID: 29442498 DOI: 10.1021/acs.accounts.7b00250] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
31
Ray NJ, Hall D, Carver JA. A structural and functional study of Gln147 deamidation in αA-crystallin, a site of modification in human cataract. Exp Eye Res 2017;161:163-173. [DOI: 10.1016/j.exer.2017.05.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 05/16/2017] [Indexed: 10/19/2022]
32
Sagar V, Chaturvedi SK, Schuck P, Wistow G. Crystal Structure of Chicken γS-Crystallin Reveals Lattice Contacts with Implications for Function in the Lens and the Evolution of the βγ-Crystallins. Structure 2017. [PMID: 28648607 PMCID: PMC5518705 DOI: 10.1016/j.str.2017.05.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
33
Liquid-liquid phase separation of a monoclonal antibody at low ionic strength: Influence of anion charge and concentration. Biophys Chem 2017;220:7-19. [DOI: 10.1016/j.bpc.2016.08.003] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2016] [Revised: 08/20/2016] [Accepted: 08/20/2016] [Indexed: 12/15/2022]
34
Sacharz J, Wesełucha-Birczyńska A, Paluszkiewicz C, Chaniecki P, Błażewicz M. A 2D correlation Raman spectroscopy analysis of a human cataractous lens. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.04.045] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
35
Pescosolido N, Barbato A, Giannotti R, Komaiha C, Lenarduzzi F. Age-related changes in the kinetics of human lenses: prevention of the cataract. Int J Ophthalmol 2016;9:1506-1517. [PMID: 27803872 DOI: 10.18240/ijo.2016.10.23] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2015] [Accepted: 01/13/2016] [Indexed: 12/12/2022]  Open
36
Minton AP. Recent applications of light scattering measurement in the biological and biopharmaceutical sciences. Anal Biochem 2016;501:4-22. [PMID: 26896682 PMCID: PMC5804501 DOI: 10.1016/j.ab.2016.02.007] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Revised: 02/04/2016] [Accepted: 02/05/2016] [Indexed: 01/09/2023]
37
Ray NJ, Hall D, Carver JA. Deamidation of N76 in human γS-crystallin promotes dimer formation. Biochim Biophys Acta Gen Subj 2015;1860:315-24. [PMID: 26318015 DOI: 10.1016/j.bbagen.2015.08.015] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Revised: 06/28/2015] [Accepted: 08/24/2015] [Indexed: 10/23/2022]
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