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For: Song C, Velazquez Escobar F, Xu XL, Narikawa R, Ikeuchi M, Siebert F, Gärtner W, Matysik J, Hildebrandt P. A Red/Green Cyanobacteriochrome Sustains Its Color Despite a Change in the Bilin Chromophore’s Protonation State. Biochemistry 2015;54:5839-48. [DOI: 10.1021/acs.biochem.5b00735] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Nagae T, Fujita Y, Tsuchida T, Kamo T, Seto R, Hamada M, Aoyama H, Sato-Tomita A, Fujisawa T, Eki T, Miyanoiri Y, Ito Y, Soeta T, Ukaji Y, Unno M, Mishima M, Hirose Y. Green/red light-sensing mechanism in the chromatic acclimation photosensor. SCIENCE ADVANCES 2024;10:eadn8386. [PMID: 38865454 PMCID: PMC11168458 DOI: 10.1126/sciadv.adn8386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 04/26/2024] [Indexed: 06/14/2024]
2
Blain-Hartung M, Johannes von Sass G, Plaickner J, Katz S, Tu Hoang O, Andrea Mroginski M, Esser N, Budisa N, Forest KT, Hildebrandt P. On the Role of a Conserved Tryptophan in the Chromophore Pocket of Cyanobacteriochrome. J Mol Biol 2024;436:168227. [PMID: 37544357 DOI: 10.1016/j.jmb.2023.168227] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 07/26/2023] [Accepted: 07/31/2023] [Indexed: 08/08/2023]
3
Suzuki T, Yoshimura M, Arai M, Narikawa R. Crucial Residue for Tuning Thermal Relaxation Kinetics in the Biliverdin-binding Cyanobacteriochrome Photoreceptor Revealed by Site-saturation Mutagenesis. J Mol Biol 2024;436:168451. [PMID: 38246412 DOI: 10.1016/j.jmb.2024.168451] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Revised: 01/15/2024] [Accepted: 01/16/2024] [Indexed: 01/23/2024]
4
Takeda Y, Ohtsu I, Suzuki T, Nakasone Y, Fushimi K, Ikeuchi M, Terazima M, Dohra H, Narikawa R. Conformational change in an engineered biliverdin-binding cyanobacteriochrome during the photoconversion process. Arch Biochem Biophys 2023;745:109715. [PMID: 37549803 DOI: 10.1016/j.abb.2023.109715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 08/02/2023] [Accepted: 08/05/2023] [Indexed: 08/09/2023]
5
Buhrke D, Lahav Y, Rao A, Ruf J, Schapiro I, Hamm P. Transient 2D IR Spectroscopy and Multiscale Simulations Reveal Vibrational Couplings in the Cyanobacteriochrome Slr1393-g3. J Am Chem Soc 2023. [PMID: 37450891 DOI: 10.1021/jacs.3c00896] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2023]
6
Hildebrandt P. Vibrational Spectroscopy of Phytochromes. Biomolecules 2023;13:1007. [PMID: 37371587 DOI: 10.3390/biom13061007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 06/12/2023] [Accepted: 06/14/2023] [Indexed: 06/29/2023]  Open
7
Priyadarshini N, Steube N, Wiens D, Narikawa R, Wilde A, Hochberg GKA, Enomoto G. Evidence for an early green/red photocycle that precedes the diversification of GAF domain photoreceptor cyanobacteriochromes. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES : OFFICIAL JOURNAL OF THE EUROPEAN PHOTOCHEMISTRY ASSOCIATION AND THE EUROPEAN SOCIETY FOR PHOTOBIOLOGY 2023:10.1007/s43630-023-00387-4. [PMID: 36781703 DOI: 10.1007/s43630-023-00387-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 02/01/2023] [Indexed: 02/15/2023]
8
Light- and pH-dependent structural changes in cyanobacteriochrome AnPixJg2. Photochem Photobiol Sci 2022;21:447-469. [PMID: 35394641 DOI: 10.1007/s43630-022-00204-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 03/03/2022] [Indexed: 10/18/2022]
9
Okuda Y, Miyoshi R, Kamo T, Fujisawa T, Nagae T, Mishima M, Eki T, Hirose Y, Unno M. Raman Spectroscopy of an Atypical C15-E,syn Bilin Chromophore in Cyanobacteriochrome RcaE. J Phys Chem B 2022;126:813-821. [DOI: 10.1021/acs.jpcb.1c09652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
10
Kamo T, Eki T, Hirose Y. Pressurized Liquid Extraction of a Phycocyanobilin Chromophore and Its Reconstitution with a Cyanobacteriochrome Photosensor for Efficient Isotopic Labeling. PLANT & CELL PHYSIOLOGY 2021;62:334-347. [PMID: 33386854 PMCID: PMC8112840 DOI: 10.1093/pcp/pcaa164] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 12/09/2020] [Indexed: 06/12/2023]
11
Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE. Proc Natl Acad Sci U S A 2021;118:2024583118. [PMID: 33972439 DOI: 10.1073/pnas.2024583118] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
12
Ruf J, Hamm P, Buhrke D. Needles in a haystack: H-bonding in an optogenetic protein observed with isotope labeling and 2D-IR spectroscopy. Phys Chem Chem Phys 2021;23:10267-10273. [PMID: 33899887 PMCID: PMC8099029 DOI: 10.1039/d1cp00996f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 04/09/2021] [Indexed: 11/29/2022]
13
Rao AG, Wiebeler C, Sen S, Cerutti DS, Schapiro I. Histidine protonation controls structural heterogeneity in the cyanobacteriochrome AnPixJg2. Phys Chem Chem Phys 2021;23:7359-7367. [PMID: 33876095 DOI: 10.1039/d0cp05314g] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
14
Kirpich JS, Chang CW, Franse J, Yu Q, Escobar FV, Jenkins AJ, Martin SS, Narikawa R, Ames JB, Lagarias JC, Larsen DS. Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences. Biochemistry 2021;60:274-288. [PMID: 33439010 DOI: 10.1021/acs.biochem.0c00796] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
15
Buhrke D, Oppelt KT, Heckmeier PJ, Fernández-Terán R, Hamm P. Nanosecond protein dynamics in a red/green cyanobacteriochrome revealed by transient IR spectroscopy. J Chem Phys 2020;153:245101. [DOI: 10.1063/5.0033107] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
16
Jähnigen S, Sebastiani D. Carbon Atoms Speaking Out: How the Geometric Sensitivity of 13C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ. Molecules 2020;25:E5505. [PMID: 33255423 PMCID: PMC7727823 DOI: 10.3390/molecules25235505] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Revised: 11/18/2020] [Accepted: 11/19/2020] [Indexed: 11/29/2022]  Open
17
Fushimi K, Hoshino H, Shinozaki-Narikawa N, Kuwasaki Y, Miyake K, Nakajima T, Sato M, Kano F, Narikawa R. The Cruciality of Single Amino Acid Replacement for the Spectral Tuning of Biliverdin-Binding Cyanobacteriochromes. Int J Mol Sci 2020;21:ijms21176278. [PMID: 32872628 PMCID: PMC7504144 DOI: 10.3390/ijms21176278] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 08/26/2020] [Accepted: 08/29/2020] [Indexed: 01/27/2023]  Open
18
Buhrke D, Battocchio G, Wilkening S, Blain-Hartung M, Baumann T, Schmitt FJ, Friedrich T, Mroginski MA, Hildebrandt P. Red, Orange, Green: Light- and Temperature-Dependent Color Tuning in a Cyanobacteriochrome. Biochemistry 2019;59:509-519. [PMID: 31840994 DOI: 10.1021/acs.biochem.9b00931] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
19
Sato T, Kikukawa T, Miyoshi R, Kajimoto K, Yonekawa C, Fujisawa T, Unno M, Eki T, Hirose Y. Protochromic absorption changes in the two-cysteine photocycle of a blue/orange cyanobacteriochrome. J Biol Chem 2019;294:18909-18922. [PMID: 31649035 DOI: 10.1074/jbc.ra119.010384] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 10/23/2019] [Indexed: 11/06/2022]  Open
20
Fushimi K, Narikawa R. Cyanobacteriochromes: photoreceptors covering the entire UV-to-visible spectrum. Curr Opin Struct Biol 2019;57:39-46. [DOI: 10.1016/j.sbi.2019.01.018] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 01/08/2019] [Accepted: 01/28/2019] [Indexed: 10/27/2022]
21
MAS NMR on a Red/Far-Red Photochromic Cyanobacteriochrome All2699 from Nostoc. Int J Mol Sci 2019;20:ijms20153656. [PMID: 31357417 PMCID: PMC6696110 DOI: 10.3390/ijms20153656] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 07/21/2019] [Accepted: 07/24/2019] [Indexed: 11/16/2022]  Open
22
Luck M, Velázquez Escobar F, Glass K, Sabotke MI, Hagedorn R, Corellou F, Siebert F, Hildebrandt P, Hegemann P. Photoreactions of the Histidine Kinase Rhodopsin Ot-HKR from the Marine Picoalga Ostreococcus tauri. Biochemistry 2019;58:1878-1891. [PMID: 30768260 DOI: 10.1021/acs.biochem.8b01200] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
23
Wiebeler C, Rao AG, Gärtner W, Schapiro I. Die effektive Konjugationslänge ist für die spektrale Verschiebung im rot/grün schaltenden Cyanobakteriochrom Slr1393g3 verantwortlich. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201810266] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
24
Wiebeler C, Rao AG, Gärtner W, Schapiro I. The Effective Conjugation Length Is Responsible for the Red/Green Spectral Tuning in the Cyanobacteriochrome Slr1393g3. Angew Chem Int Ed Engl 2019;58:1934-1938. [PMID: 30508317 DOI: 10.1002/anie.201810266] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Indexed: 01/19/2023]
25
Fushimi K, Ikeuchi M, Narikawa R. The Expanded Red/Green Cyanobacteriochrome Lineage: An Evolutionary Hot Spot. Photochem Photobiol 2018;93:903-906. [PMID: 28500709 DOI: 10.1111/php.12764] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 03/16/2017] [Indexed: 01/03/2023]
26
Fushimi K, Enomoto G, Ikeuchi M, Narikawa R. Distinctive Properties of Dark Reversion Kinetics between Two Red/Green-Type Cyanobacteriochromes and their Application in the Photoregulation of cAMP Synthesis. Photochem Photobiol 2018;93:681-691. [PMID: 28500699 DOI: 10.1111/php.12732] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 12/07/2016] [Indexed: 12/13/2022]
27
Gärtner W. In-Planta Expression: Searching for the Genuine Chromophores of Cryptochrome-3 from Arabidopsis thaliana. Photochem Photobiol 2018;93:382-384. [PMID: 28211124 DOI: 10.1111/php.12693] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 11/15/2016] [Indexed: 11/30/2022]
28
Saini DK, Pabbi S, Shukla P. Cyanobacterial pigments: Perspectives and biotechnological approaches. Food Chem Toxicol 2018;120:616-624. [PMID: 30077705 DOI: 10.1016/j.fct.2018.08.002] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Revised: 06/26/2018] [Accepted: 08/01/2018] [Indexed: 02/07/2023]
29
Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4. Proc Natl Acad Sci U S A 2018;115:4387-4392. [PMID: 29632180 DOI: 10.1073/pnas.1720682115] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
30
Scarbath-Evers LK, Jähnigen S, Elgabarty H, Song C, Narikawa R, Matysik J, Sebastiani D. Structural heterogeneity in a parent ground-state structure of AnPixJg2 revealed by theory and spectroscopy. Phys Chem Chem Phys 2018;19:13882-13894. [PMID: 28513754 DOI: 10.1039/c7cp01218g] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
31
Oliinyk OS, Chernov KG, Verkhusha VV. Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes. Int J Mol Sci 2017;18:E1691. [PMID: 28771184 PMCID: PMC5578081 DOI: 10.3390/ijms18081691] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Revised: 07/28/2017] [Accepted: 07/28/2017] [Indexed: 12/21/2022]  Open
32
Zhao Z, Gonsior M, Luek J, Timko S, Ianiri H, Hertkorn N, Schmitt-Kopplin P, Fang X, Zeng Q, Jiao N, Chen F. Picocyanobacteria and deep-ocean fluorescent dissolved organic matter share similar optical properties. Nat Commun 2017;8:15284. [PMID: 28513605 PMCID: PMC5442323 DOI: 10.1038/ncomms15284] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Accepted: 03/06/2017] [Indexed: 11/09/2022]  Open
33
Lamparter T, Krauß N, Scheerer P. Phytochromes from Agrobacterium fabrum. Photochem Photobiol 2017;93:642-655. [DOI: 10.1111/php.12761] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Accepted: 02/22/2017] [Indexed: 01/24/2023]
34
Rockwell NC, Martin SS, Lagarias JC. There and Back Again: Loss and Reacquisition of Two‐Cys Photocycles in Cyanobacteriochromes. Photochem Photobiol 2017;93:741-754. [DOI: 10.1111/php.12708] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 11/01/2016] [Indexed: 11/28/2022]
35
Velazquez Escobar F, Lang C, Takiden A, Schneider C, Balke J, Hughes J, Alexiev U, Hildebrandt P, Mroginski MA. Protonation-Dependent Structural Heterogeneity in the Chromophore Binding Site of Cyanobacterial Phytochrome Cph1. J Phys Chem B 2016;121:47-57. [DOI: 10.1021/acs.jpcb.6b09600] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
36
Fushimi K, Nakajima T, Aono Y, Yamamoto T, Ni-Ni-Win, Ikeuchi M, Sato M, Narikawa R. Photoconversion and Fluorescence Properties of a Red/Green-Type Cyanobacteriochrome AM1_C0023g2 That Binds Not Only Phycocyanobilin But Also Biliverdin. Front Microbiol 2016;7:588. [PMID: 27242674 PMCID: PMC4876366 DOI: 10.3389/fmicb.2016.00588] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Accepted: 04/11/2016] [Indexed: 01/09/2023]  Open
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