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For: Suresh G, Padhi S, Patil I, Priyakumar UD. Urea Mimics Nucleobases by Preserving the Helical Integrity of B-DNA Duplexes via Hydrogen Bonding and Stacking Interactions. Biochemistry 2016;55:5653-5664. [DOI: 10.1021/acs.biochem.6b00309] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Number Cited by Other Article(s)
1
Lee D, Lee J, Kim W, Suh Y, Park J, Kim S, Kim Y, Kwon S, Jeong S. Systematic Selection of High-Affinity ssDNA Sequences to Carbon Nanotubes. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2308915. [PMID: 38932669 PMCID: PMC11348070 DOI: 10.1002/advs.202308915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 06/03/2024] [Indexed: 06/28/2024]
2
Tomar R, Li S, Egli M, Stone MP. Replication Bypass of the N-(2-Deoxy-d-erythro-pentofuranosyl)-urea DNA Lesion by Human DNA Polymerase η. Biochemistry 2024;63:754-766. [PMID: 38413007 PMCID: PMC10956437 DOI: 10.1021/acs.biochem.3c00569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 12/26/2023] [Accepted: 12/27/2023] [Indexed: 02/29/2024]
3
Tariq N, Xu C, Wang J, Kume T, Macgregor RB. Enhancement of the thermal stability of G-quadruplex structures by urea. Biophys Chem 2023;299:107043. [PMID: 37285661 DOI: 10.1016/j.bpc.2023.107043] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 05/12/2023] [Accepted: 05/23/2023] [Indexed: 06/09/2023]
4
Shi J, Zhang B, Zheng T, Zhou T, Guo M, Wang Y, Dong Y. DNA Materials Assembled from One DNA Strand. Int J Mol Sci 2023;24:ijms24098177. [PMID: 37175884 PMCID: PMC10179628 DOI: 10.3390/ijms24098177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 04/17/2023] [Accepted: 04/21/2023] [Indexed: 05/15/2023]  Open
5
Kumar S, Kharb A, Vazirani A, Chauhan RS, Pramanik G, Sengupta M, Ghosh S. Nucleic acid extraction from complex biofluid using toothpick-actuated over-the-counter medical-grade cotton. Bioorg Med Chem 2022;73:117009. [PMID: 36126446 DOI: 10.1016/j.bmc.2022.117009] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 08/16/2022] [Accepted: 09/09/2022] [Indexed: 11/17/2022]
6
Kawada T, Kino K, Tokorodani K, Anabuki R, Morikawa M, Kobayashi T, Ohara K, Ohshima T, Miyazawa H. Analysis of nucleotide insertion opposite urea and translesion synthesis across urea by DNA polymerases. Genes Environ 2022;44:7. [PMID: 35168664 PMCID: PMC8845263 DOI: 10.1186/s41021-022-00236-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 02/01/2022] [Indexed: 11/10/2022]  Open
7
Sarkar S, Singh PC. Sequence specific hydrogen bond of DNA with denaturants affects its stability: Spectroscopic and simulation studies. Biochim Biophys Acta Gen Subj 2020;1865:129735. [PMID: 32946929 DOI: 10.1016/j.bbagen.2020.129735] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Revised: 08/21/2020] [Accepted: 09/13/2020] [Indexed: 12/31/2022]
8
Sarkar S, Singh PC. Alteration of the groove width of DNA induced by the multimodal hydrogen bonding of denaturants with DNA bases in its grooves affects their stability. Biochim Biophys Acta Gen Subj 2020;1864:129498. [DOI: 10.1016/j.bbagen.2019.129498] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 11/20/2019] [Accepted: 11/25/2019] [Indexed: 02/08/2023]
9
Raghunathan S, Jaganade T, Priyakumar UD. Urea-aromatic interactions in biology. Biophys Rev 2020;12:65-84. [PMID: 32067192 PMCID: PMC7040157 DOI: 10.1007/s12551-020-00620-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 01/08/2020] [Indexed: 02/06/2023]  Open
10
Jaganade T, Chattopadhyay A, Pazhayam NM, Priyakumar UD. Energetic, Structural and Dynamic Properties of Nucleobase-Urea Interactions that Aid in Urea Assisted RNA Unfolding. Sci Rep 2019;9:8805. [PMID: 31217494 PMCID: PMC6584539 DOI: 10.1038/s41598-019-45010-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 05/28/2019] [Indexed: 01/21/2023]  Open
11
Rekik N, Salman S, Suleiman J, Farooq U, Flakus HT. IR spectral density of the υS(Cl–H→) band in gaseous (CH3)2O…HCl complex: Phase decoherence due to the anharmonic coupling theory and the bending mode effects. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2018.11.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
12
Rekik N, Salman S, Farooq U, Nakajima T, Wojcik MJ, Blaise P. Towards accurate infrared spectral density of weak H-bonds in absence of relaxation mechanisms. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019;207:197-208. [PMID: 30240981 DOI: 10.1016/j.saa.2018.09.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 08/04/2018] [Accepted: 09/01/2018] [Indexed: 06/08/2023]
13
Rekik N, Suleiman J, Blaise P, Wojcik MJ. Equivalence between the Classical and Quantum IR Spectral Density Approaches of Weak H-Bonds in the Absence of Damping. J Phys Chem A 2018;122:2108-2115. [PMID: 29436830 DOI: 10.1021/acs.jpca.8b00269] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
14
Goyal S, Chattopadhyay A, Kasavajhala K, Priyakumar UD. Role of Urea–Aromatic Stacking Interactions in Stabilizing the Aromatic Residues of the Protein in Urea-Induced Denatured State. J Am Chem Soc 2017;139:14931-14946. [DOI: 10.1021/jacs.7b05463] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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