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Jeon M, Kim M, Lee JS, Kim H, Choi SJ, Moon HR, Kim J. Computational Prediction of Stacking Mode in Conductive Two-Dimensional Metal-Organic Frameworks: An Exploration of Chemical and Electrical Property Changes. ACS Sens 2023; 8:3068-3075. [PMID: 37524053 DOI: 10.1021/acssensors.3c00715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
Conductive two-dimensional metal-organic frameworks (2D MOFs) have attracted interest as they induce strong charge delocalization and improve charge carrier mobility and concentration. However, characterizing their stacking mode depends on expensive and time-consuming experimental measurements. Here, we construct a potential energy surface (PES) map database for 36 2D MOFs using density functional theory (DFT) for the experimentally synthesized and non-synthesized 2D MOFs to predict their stacking mode. The DFT PES results successfully predict the experimentally synthesized stacking mode with an accuracy of 92.9% and explain the coexistence mechanism of dual stacking modes in a single compound. Furthermore, we analyze the chemical (i.e., host-guest interaction) and electrical (i.e., electronic structure) property changes affected by stacking mode. The DFT results show that the host-guest interaction can be enhanced by the transition from AA to AB stacking, taking H2S gas as a case study. The electronic band structure calculation confirms that as AB stacking displacement increases, the in-plane charge transport pathway is reduced while the out-of-plane charge transport pathway is maintained or even increased. These results indicate that there is a trade-off between chemical and electrical properties in accordance with the stacking mode.
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Affiliation(s)
- Mingyu Jeon
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Minhyuk Kim
- Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea
| | - Joon-Seok Lee
- Division of Materials of Science and Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Honghui Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Seon-Jin Choi
- Division of Materials of Science and Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
- Institute of Nano Science and Technology, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Hoi Ri Moon
- Department of Chemistry and Nano Science, Ewha Womans University, 52 Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Republic of Korea
| | - Jihan Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
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Perrin CL. Symmetry of Hydrogen Bonds: Application of NMR Method of Isotopic Perturbation and Relevance of Solvatomers. Molecules 2023; 28:molecules28114462. [PMID: 37298938 DOI: 10.3390/molecules28114462] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 05/25/2023] [Accepted: 05/27/2023] [Indexed: 06/12/2023] Open
Abstract
Short, strong, symmetric, low-barrier hydrogen bonds (H-bonds) are thought to be of special significance. We have been searching for symmetric H-bonds by using the NMR technique of isotopic perturbation. Various dicarboxylate monoanions, aldehyde enols, diamines, enamines, acid-base complexes, and two sterically encumbered enols have been investigated. Among all of these, we have found only one example of a symmetric H-bond, in nitromalonamide enol, and all of the others are equilibrating mixtures of tautomers. The nearly universal lack of symmetry is attributed to the presence of these H-bonded species as a mixture of solvatomers, meaning isomers (or stereoisomers or tautomers) that differ in their solvation environment. The disorder of solvation renders the two donor atoms instantaneously inequivalent, whereupon the hydrogen attaches to the less well solvated donor. We therefore conclude that there is no special significance to short, strong, symmetric, low-barrier H-bonds. Moreover, they have no heightened stability or else they would have been more prevalent.
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Affiliation(s)
- Charles L Perrin
- Department of Chemistry & Biochemistry University of California, La Jolla, San Diego, CA 92093, USA
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Prasad S, Tantillo DJ. Substituent Effects on the Basicity of Patriscabrin A and Lettucenin A: Evolution Favors the Aromatic? ACS OMEGA 2021; 6:29685-29691. [PMID: 34778640 PMCID: PMC8582057 DOI: 10.1021/acsomega.1c04051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 10/18/2021] [Indexed: 05/06/2023]
Abstract
Basicities for derivatives of patriscabrin A and lettucenin A were calculated with density functional theory. A significant correlation is observed between the basicity and Hammett σ parameters. Protonation increases the aromatic character of the cyclic moieties of each natural product. The naturally occurring structures are predicted to be the most aromatic.
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Park J, Chen Z, Flores RA, Wallnerström G, Kulkarni A, Nørskov JK, Jaramillo TF, Bao Z. Two-Dimensional Conductive Ni-HAB as a Catalyst for the Electrochemical Oxygen Reduction Reaction. ACS APPLIED MATERIALS & INTERFACES 2020; 12:39074-39081. [PMID: 32805928 DOI: 10.1021/acsami.0c09323] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Catalytic systems whose properties can be systematically tuned via changes in synthesis conditions are highly desirable for the next-generation catalyst design and optimization. Herein, we present a two-dimensional (2D) conductive metal-organic framework consisting of M-N4 units (M = Ni, Cu) and a hexaaminobenzene (HAB) linker as a catalyst for the oxygen reduction reaction. By varying synthetic conditions, we prepared two Ni-HAB catalysts with different crystallinities, resulting in catalytic systems with different electric conductivities, electrochemical activity, and stability. We show that crystallinity has a positive impact on conductivity and demonstrate that this improved crystallinity/conductivity improves the catalytic performance of our model system. Additionally, density functional theory simulations were performed to probe the origin of M-HAB's catalytic activity, and they suggest that M-HAB's organic linker acts as the active site with the role of the metal being to modulate the linker sites' binding strength.
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Affiliation(s)
- Jihye Park
- Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
| | - Zhihua Chen
- Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
- SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
| | - Raul A Flores
- Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
- SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
| | - Gustaf Wallnerström
- Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
- Department of Chemical Engineering, KTH Royal Institute of Technology, Stockholm 100 44, Sweden
| | - Ambarish Kulkarni
- Department of Chemical Engineering, University of California Davis, 1 Shields Avenue, Davis, California 95616, United States
| | - Jens K Nørskov
- SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
- Department of Physics, Technical University of Denmark, Building 311, DK-2800 Lyngby, Denmark
| | - Thomas F Jaramillo
- Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
- SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
| | - Zhenan Bao
- Department of Chemical Engineering, Stanford University, Stanford, California 94305, United States
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Karas LJ, Wu CH, Das R, Wu JIC. Hydrogen bond design principles. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2020; 10. [PMID: 33936251 DOI: 10.1002/wcms.1477] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Hydrogen bonding principles are at the core of supramolecular design. This overview features a discussion relating molecular structure to hydrogen bond strengths, highlighting the following electronic effects on hydrogen bonding: electronegativity, steric effects, electrostatic effects, π-conjugation, and network cooperativity. Historical developments, along with experimental and computational efforts, leading up to the birth of the hydrogen bond concept, the discovery of nonclassical hydrogen bonds (C-H…O, O-H…π, dihydrogen bonding), and the proposal of hydrogen bond design principles (e.g., secondary electrostatic interactions, resonance-assisted hydrogen bonding, and aromaticity effects) are outlined. Applications of hydrogen bond design principles are presented.
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Affiliation(s)
- Lucas J Karas
- Department of Chemistry, University of Houston, Houston, TX
| | - Chia-Hua Wu
- Department of Chemistry, University of Houston, Houston, TX
| | - Ranjita Das
- Department of Chemistry, University of Houston, Houston, TX
| | - Judy I-Chia Wu
- Department of Chemistry, University of Houston, Houston, TX
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Liu Y, Wu D, Wang X, Yu J, Li F. Fabrication of eco-friendly nanofibrous membranes functionalized with carboxymethyl-β-cyclodextrin for efficient removal of methylene blue with good recyclability. RSC Adv 2018; 8:37715-37723. [PMID: 35558587 PMCID: PMC9089427 DOI: 10.1039/c8ra07523a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 10/21/2018] [Indexed: 11/21/2022] Open
Abstract
Considering the excellent thermo-mechanical properties, chemical stability and low cost of biodegradable aliphatic-aromatic copolyesters, they are an ideal matrix when functionalized for capturing pollutants in wastewater. In this work, biodegradable poly((butylene succinate-co-terephthalate)-co-serinol terephthalate) (PBSST) copolyesters with amino side group (-NH2) were first synthesized through copolymerization, followed by grafting carboxymethyl-β-cyclodextrin (CM-β-CD) into PBSST molecular chains via amidation reaction to prepare PBSST-g-β-CD. The corresponding nanofibrous membranes were then fabricated by electrospinning as adsorbents for efficiently removing cationic dye methyl blue (MB) from aqueous solutions. The adsorption performance of the nanofibrous membranes was fitted well with pseudo-second-order model and Langmuir isotherm model. The maximum adsorption capacity was 543.48 mg g-1 for MB along with a removal efficiency of 98% after five regeneration cycles, indicating the high adsorption capacity and good recyclability of nanofibrous membranes. The adsorbents possess features of high adsorption capacity, eco-friendliness and easy operation, and exhibit great potential for disposing of printing-dying wastewater.
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Affiliation(s)
- Yinli Liu
- Key Laboratory of Textile Science & Technology, Ministry of Education, Donghua University Shanghai 201620 China .,College of Textiles, Donghua University Shanghai 201620 China
| | - Dequn Wu
- Key Laboratory of Textile Science & Technology, Ministry of Education, Donghua University Shanghai 201620 China .,College of Textiles, Donghua University Shanghai 201620 China
| | - Xueli Wang
- Innovation Center for Textile Science and Technology, Donghua University Shanghai 201620 China
| | - Jianyong Yu
- Innovation Center for Textile Science and Technology, Donghua University Shanghai 201620 China
| | - Faxue Li
- Key Laboratory of Textile Science & Technology, Ministry of Education, Donghua University Shanghai 201620 China .,College of Textiles, Donghua University Shanghai 201620 China.,Innovation Center for Textile Science and Technology, Donghua University Shanghai 201620 China
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