1
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Zhang T, Yang DB, Kloxin CJ, Pochan DJ, Saven JG. Coarse-Grain Model of Ultrarigid Polymer Rods Comprising Bifunctionally Linked Peptide Bundlemers. Biomacromolecules 2024. [PMID: 39499090 DOI: 10.1021/acs.biomac.4c01192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2024]
Abstract
Computationally designed homotetrameric helical peptide bundles have been functionalized at their N-termini to achieve supramolecular polymers, wherein individual bundles ("bundlemers") are the monomeric units. Adjacent bundles are linked via two covalent cross-links. The polymers exhibit a range of conformational properties, including formation of rigid-rods with micrometer-scale persistence lengths. Herein, a coarse-grained model is used to illuminate how molecular features affect the rod-like behavior of the polymers. With increasing affinity between bundlemer ends, a sharp transition in the persistence length is observed. Doubly linked chains exhibit larger persistence lengths and more robust formation of rigid-rod structures than singly linked chains. Chain stiffness increases with decreasing temperatures. Increasing the length of the cross-linker results in more flexible chains. This model provides insights into how molecular features control the structural properties of chains comprising doubly linked rigid bundlemers.
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Affiliation(s)
- Tianren Zhang
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Dai-Bei Yang
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Christopher J Kloxin
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Darrin J Pochan
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Jeffery G Saven
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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2
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Mosseri A, Sancho-Albero M, Mercurio FA, Leone M, De Cola L, Romanelli A. Tryptophan-PNA gc Conjugates Self-Assemble to Form Fibers. Bioconjug Chem 2023; 34:1429-1438. [PMID: 37486977 PMCID: PMC10436247 DOI: 10.1021/acs.bioconjchem.3c00200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 07/07/2023] [Indexed: 07/26/2023]
Abstract
Peptide nucleic acids and their conjugates to peptides can self-assemble and generate complex architectures. In this work, we explored the self-assembly of PNA dimers conjugated to the dipeptide WW. Our studies suggest that the indole ring of tryptophan promotes aggregation of the conjugates. The onset of fluorescence is observed upon self-assembly. The structure of self-assembled WWgc is concentration-dependent, being spherical at low concentrations and fibrous at high concentrations. As suggested by molecular modeling studies, fibers are stabilized by stacking interactions between tryptophans and Watson-Crick hydrogen bonds between nucleobases.
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Affiliation(s)
- Andrea Mosseri
- Dipartimento
di Scienze Farmaceutiche, Università
Degli Studi di Milano, via Venezian 21, 20133 Milano, Italy
| | - María Sancho-Albero
- Department
of Molecular Biochemistry and Pharmacology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, 20156 Milano, Italy
| | - Flavia Anna Mercurio
- Istituto
di Biostrutture e Bioimmagini—CNR, via Pietro Castellino 111, 80131 Naples, Italy
| | - Marilisa Leone
- Istituto
di Biostrutture e Bioimmagini—CNR, via Pietro Castellino 111, 80131 Naples, Italy
| | - Luisa De Cola
- Dipartimento
di Scienze Farmaceutiche, Università
Degli Studi di Milano, via Venezian 21, 20133 Milano, Italy
- Department
of Molecular Biochemistry and Pharmacology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, 20156 Milano, Italy
| | - Alessandra Romanelli
- Dipartimento
di Scienze Farmaceutiche, Università
Degli Studi di Milano, via Venezian 21, 20133 Milano, Italy
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3
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Protease-catalyzed synthesis of α-poly-L-Lysine and amphiphilic poly(L-lysine-co-L-phenylalanine) in a neat non-toxic organic solvent. Bioprocess Biosyst Eng 2023; 46:515-522. [PMID: 36539643 DOI: 10.1007/s00449-022-02836-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 12/08/2022] [Indexed: 12/24/2022]
Abstract
Subtilisin Carlsberg (alkaline protease from Bacillus licheniformis) catalyzes the syntheses of high molecular weights (ca. 20 KDa) cationic α-poly-L-lysine and amphiphilic poly(α-L-lysine-co-L-phenylalanine) in neat organic solvent. The synthesis is conducted in liquid 1,1,1,2-tetrafluoroethane solvent, which is a hydrophobic non-toxic gas that does not deplete the ozone layer and approved for pharmaceutical applications. Solubility of substrates and adequate protease activity in this system with low water environment limits the reaction of hydrolysis of the growing peptide chains. The pressurization of this organic compressed fluid to liquid has low-pressure requirements (25 bar, 40 ºC), and its complete evaporation at atmospheric pressure after completing the reaction ensures solvent-free residues in products. The resulting polypeptides present null cytotoxicity according to MTT and NR analyses, as well as Calcein/EthD-1 assay in human cells.
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4
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Gray VP, Amelung CD, Duti IJ, Laudermilch EG, Letteri RA, Lampe KJ. Biomaterials via peptide assembly: Design, characterization, and application in tissue engineering. Acta Biomater 2022; 140:43-75. [PMID: 34710626 PMCID: PMC8829437 DOI: 10.1016/j.actbio.2021.10.030] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 09/23/2021] [Accepted: 10/20/2021] [Indexed: 12/16/2022]
Abstract
A core challenge in biomaterials, with both fundamental significance and technological relevance, concerns the rational design of bioactive microenvironments. Designed properly, peptides can undergo supramolecular assembly into dynamic, physical hydrogels that mimic the mechanical, topological, and biochemical features of native tissue microenvironments. The relatively facile, inexpensive, and automatable preparation of peptides, coupled with low batch-to-batch variability, motivates the expanded use of assembling peptide hydrogels for biomedical applications. Integral to realizing dynamic peptide assemblies as functional biomaterials for tissue engineering is an understanding of the molecular and macroscopic features that govern assembly, morphology, and biological interactions. In this review, we first discuss the design of assembling peptides, including primary structure (sequence), secondary structure (e.g., α-helix and β-sheets), and molecular interactions that facilitate assembly into multiscale materials with desired properties. Next, we describe characterization tools for elucidating molecular structure and interactions, morphology, bulk properties, and biological functionality. Understanding of these characterization methods enables researchers to access a variety of approaches in this ever-expanding field. Finally, we discuss the biological properties and applications of peptide-based biomaterials for engineering several important tissues. By connecting molecular features and mechanisms of assembling peptides to the material and biological properties, we aim to guide the design and characterization of peptide-based biomaterials for tissue engineering and regenerative medicine. STATEMENT OF SIGNIFICANCE: Engineering peptide-based biomaterials that mimic the topological and mechanical properties of natural extracellular matrices provide excellent opportunities to direct cell behavior for regenerative medicine and tissue engineering. Here we review the molecular-scale features of assembling peptides that result in biomaterials that exhibit a variety of relevant extracellular matrix-mimetic properties and promote beneficial cell-biomaterial interactions. Aiming to inspire and guide researchers approaching this challenge from both the peptide biomaterial design and tissue engineering perspectives, we also present characterization tools for understanding the connection between peptide structure and properties and highlight the use of peptide-based biomaterials in neural, orthopedic, cardiac, muscular, and immune engineering applications.
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Affiliation(s)
- Vincent P Gray
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Connor D Amelung
- Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Israt Jahan Duti
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Emma G Laudermilch
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Rachel A Letteri
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States.
| | - Kyle J Lampe
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States; Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, 22903, United States.
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5
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Liu S, Fang Z, Ng K. Recent development in fabrication and evaluation of phenolic-dietary fiber composites for potential treatment of colonic diseases. Crit Rev Food Sci Nutr 2022; 63:6860-6884. [PMID: 35225102 DOI: 10.1080/10408398.2022.2043236] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Phenolics have been shown by in vitro and animal studies to have multiple pharmacological effects against various colonic diseases. However, their efficacy against colonic diseases, such as inflammatory bowel diseases, Crohn's disease, and colorectal cancer, is significantly compromised due to their chemical instability and susceptibility to modification along the gastrointestinal tract (GIT) before reaching the colonic site. Dietary fibers are promising candidates that can form phenolic-dietary fiber composites (PDC) to carry phenolics to the colon, as they are natural polysaccharides that are non-digestible in the upper intestinal tract but can be partially or fully degradable by gut microbiota in the colon, triggering the release at this targeted site. In addition, soluble and fermentable dietary fibers confer additional health benefits as prebiotics when used in the PDC fabrication, and the possibility of synergistic relationship between phenolics and fibers in alleviating the disease conditions. The functionalities of PDC need to be characterized in terms of their particle characteristics, molecular interactions, release profiles in simulated digestion and colonic fermentation to fully understand the metabolic fate and health benefits. This review examines recent advancements regarding the approaches for fabrication, characterization, and evaluation of PDC in in vitro conditions.
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Affiliation(s)
- Siyao Liu
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia
| | - Zhongxiang Fang
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia
| | - Ken Ng
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia
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6
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Sinha NJ, Langenstein MG, Pochan DJ, Kloxin CJ, Saven JG. Peptide Design and Self-assembly into Targeted Nanostructure and Functional Materials. Chem Rev 2021; 121:13915-13935. [PMID: 34709798 DOI: 10.1021/acs.chemrev.1c00712] [Citation(s) in RCA: 100] [Impact Index Per Article: 33.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Peptides have been extensively utilized to construct nanomaterials that display targeted structure through hierarchical assembly. The self-assembly of both rationally designed peptides derived from naturally occurring domains in proteins as well as intuitively or computationally designed peptides that form β-sheets and helical secondary structures have been widely successful in constructing nanoscale morphologies with well-defined 1-d, 2-d, and 3-d architectures. In this review, we discuss these successes of peptide self-assembly, especially in the context of designing hierarchical materials. In particular, we emphasize the differences in the level of peptide design as an indicator of complexity within the targeted self-assembled materials and highlight future avenues for scientific and technological advances in this field.
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Affiliation(s)
- Nairiti J Sinha
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Matthew G Langenstein
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Darrin J Pochan
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Christopher J Kloxin
- Department of Materials Science and Engineering, University of Delaware, Newark, Delaware 19716, United States.,Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Jeffery G Saven
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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7
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La Manna S, Di Natale C, Onesto V, Marasco D. Self-Assembling Peptides: From Design to Biomedical Applications. Int J Mol Sci 2021; 22:12662. [PMID: 34884467 PMCID: PMC8657556 DOI: 10.3390/ijms222312662] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/15/2021] [Accepted: 11/19/2021] [Indexed: 12/20/2022] Open
Abstract
Self-assembling peptides could be considered a novel class of agents able to harvest an array of micro/nanostructures that are highly attractive in the biomedical field. By modifying their amino acid composition, it is possible to mime several biological functions; when assembled in micro/nanostructures, they can be used for a variety of purposes such as tissue regeneration and engineering or drug delivery to improve drug release and/or stability and to reduce side effects. Other significant advantages of self-assembled peptides involve their biocompatibility and their ability to efficiently target molecular recognition sites. Due to their intrinsic characteristics, self-assembled peptide micro/nanostructures are capable to load both hydrophobic and hydrophilic drugs, and they are suitable to achieve a triggered drug delivery at disease sites by inserting in their structure's stimuli-responsive moieties. The focus of this review was to summarize the most recent and significant studies on self-assembled peptides with an emphasis on their application in the biomedical field.
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Affiliation(s)
- Sara La Manna
- Department of Pharmacy, University of Naples “Federico II”, 80131 Naples, Italy;
| | - Concetta Di Natale
- Istituto Italiano di Tecnologia, IIT@CRIB, Largo Barsanti e Matteucci, 53, 80125 Napoli, Italy
- Centro di Ricerca Interdipartimentale sui Biomateriali CRIB, Università di Napoli Federico II, Piazzale Tecchio, 80, 80125 Napoli, Italy
| | - Valentina Onesto
- Institute of Nanotechnology, Consiglio Nazionale delle Ricerche, CNR NANOTEC, via Monteroni, c/o Campus Ecotekne, 73100 Lecce, Italy;
| | - Daniela Marasco
- Department of Pharmacy, University of Naples “Federico II”, 80131 Naples, Italy;
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8
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Stevens CA, Kaur K, Klok HA. Self-assembly of protein-polymer conjugates for drug delivery. Adv Drug Deliv Rev 2021; 174:447-460. [PMID: 33984408 DOI: 10.1016/j.addr.2021.05.002] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 04/22/2021] [Accepted: 05/03/2021] [Indexed: 01/07/2023]
Abstract
Protein-polymer conjugates are a class of molecules that combine the stability of polymers with the diversity, specificity, and functionality of biomolecules. These bioconjugates can result in hybrid materials that display properties not found in their individual components and can be particularly relevant for drug delivery applications. Engineering amphiphilicity into these bioconjugate materials can lead to phase separation and the assembly of high-order structures. The assembly, termed self-assembly, of these hierarchical structures entails multiple levels of organization: at each level, new properties emerge, which are, in turn, influenced by lower levels. Here, we provide a critical review of protein-polymer conjugate self-assembly and how these materials can be used for therapeutic applications and drug delivery. In addition, we discuss central bioconjugate design questions and propose future perspectives for the field of protein-polymer conjugate self-assembly.
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Affiliation(s)
- Corey A Stevens
- École Polytechnique Fédérale de Lausanne (EPFL), Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, Bâtiment MXD, Station 12, CH-1015 Lausanne, Switzerland.
| | - Kuljeet Kaur
- École Polytechnique Fédérale de Lausanne (EPFL), Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, Bâtiment MXD, Station 12, CH-1015 Lausanne, Switzerland
| | - Harm-Anton Klok
- École Polytechnique Fédérale de Lausanne (EPFL), Institut des Matériaux and Institut des Sciences et Ingénierie Chimiques, Laboratoire des Polymères, Bâtiment MXD, Station 12, CH-1015 Lausanne, Switzerland
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9
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González-Obeso C, González-Pérez M, Mano JF, Alonso M, Rodríguez-Cabello JC. Complex Morphogenesis by a Model Intrinsically Disordered Protein. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e2005191. [PMID: 33216415 DOI: 10.1002/smll.202005191] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 10/14/2020] [Indexed: 05/13/2023]
Abstract
The development of intricate and complex self-assembling structures in the micrometer range, such as biomorphs, is a major challenge in materials science. Although complex structures can be obtained from self-assembling materials as they segregate from solution, their size is usually in the nanometer range or requires accessory techniques. Previous studies with intrinsically disordered proteins (IDPs) have shown that the active interplay of different molecular interactions provides access to new and more complex nanostructures. As such, it is hypothesized that enriching the variety of intra- and intermolecular interactions in a model IDP will widen the landscape of sophisticated intermediate structures that can be accessed. In this study, a model silk-elastin-like recombinamer capable of interacting via three non-covalent interactions, namely hydrophobic, ion-pairing, and H-bonding is built. This model material is shown to self-assemble into complex stable micrometer-sized biomorphs. Variation of the block composition, pH, and temperature demonstrates the necessary interplay of all three interactions for the formation of such complex structures.
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Affiliation(s)
- Constancio González-Obeso
- BIOFORGE (Group for Advanced Materials and Nanobiotechnology), University of Valladolid-CIBER-BBN, Paseo de Belén 19, Valladolid, 47011, Spain
- Department of Biomedical Engineering, Tufts University, 4 Colby St., Medford, MA, 02155, USA
| | - Miguel González-Pérez
- BIOFORGE (Group for Advanced Materials and Nanobiotechnology), University of Valladolid-CIBER-BBN, Paseo de Belén 19, Valladolid, 47011, Spain
| | - João F Mano
- Department of Chemistry, CICECO - Aveiro Institute of Materials, University of Aveiro, Aveiro, 3810-193, Portugal
| | - Matilde Alonso
- BIOFORGE (Group for Advanced Materials and Nanobiotechnology), University of Valladolid-CIBER-BBN, Paseo de Belén 19, Valladolid, 47011, Spain
| | - José Carlos Rodríguez-Cabello
- BIOFORGE (Group for Advanced Materials and Nanobiotechnology), University of Valladolid-CIBER-BBN, Paseo de Belén 19, Valladolid, 47011, Spain
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10
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Tandem-Homodimer of a β-Sheet-Forming Short Peptide Inhibits Random-to-β Structural Transition of Its Original Monomer. Processes (Basel) 2020. [DOI: 10.3390/pr8111421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
There is an increasing interest in designing fibrillogenesis modulators for treating amyloid β (Aβ)-peptide-associated diseases. The use of Aβ fragment peptides and their derivatives, as well as nonpeptidyl natural products, is one promising approach to prevent Aβ fibrillation. In this study, we demonstrate that tandem-homodimers (TDs) of a β-sheet-forming short peptide in which the amino acid sequence is duplicated in series and joined via an amino alkanoic acid linker of different chain lengths, preventing the random-to-β structural transition of the original monomer. Ape5-TD, containing 5-amino pentanoate, most potently prevented this transition for at least five days by generating disordered aggregates with reduced tryptic stability. The linkers in the TDs generated this inhibitory activity, probably due to their bent conformations and hydrophobicity, appropriate for accommodating and twisting the monomers, resulting in irregular arrangements of the peptides. The present study could allow the design of a new class of protein/peptide fibrillogenesis modulators.
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11
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Kumar S, Binder WH. Peptide-induced RAFT polymerization via an amyloid-β 17-20-based chain transfer agent. SOFT MATTER 2020; 16:6964-6968. [PMID: 32717010 DOI: 10.1039/d0sm01169j] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We here describe the synthesis of a novel peptide/polymer-conjugate, embedding the amyloid-β (Aβ) protein core sequence Leu-Val-Phe-Phe (LVFF, Aβ17-20) via RAFT polymerization. Based on a novel chain transfer-agent, the "grafting-from" approach effectively generates the well-defined peptide-polymer conjugates with appreciably high monomer conversion rate, resulting in mechanically stiffer peptide-functional cross-linked polymeric hydrogels.
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Affiliation(s)
- Sonu Kumar
- Macromolecular Chemistry, Institute of Chemistry, Faculty of Natural Science II (Chemistry, Physics and Mathematics), Martin Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, Halle (Saale) D-06120, Germany. and Department of Applied Sciences (Chemistry), Punjab Engineering College (Deemed to be University), Sector 12, Chandigarh, 160012, India
| | - Wolfgang H Binder
- Macromolecular Chemistry, Institute of Chemistry, Faculty of Natural Science II (Chemistry, Physics and Mathematics), Martin Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, Halle (Saale) D-06120, Germany.
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12
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Deike S, Rothemund S, Voigt B, Samantray S, Strodel B, Binder WH. β-Turn mimetic synthetic peptides as amyloid-β aggregation inhibitors. Bioorg Chem 2020; 101:104012. [PMID: 32683138 DOI: 10.1016/j.bioorg.2020.104012] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 06/09/2020] [Accepted: 06/10/2020] [Indexed: 12/28/2022]
Abstract
Aggregation of amyloid peptides results in severe neurodegenerative diseases. While the fibril structures of Aβ40 and Aβ42 have been described recently, resolution of the aggregation pathway and evaluation of potent inhibitors still remains elusive, in particular in view of the hairpin-region of Aβ40. We here report the preparation of beta-turn mimetic conjugates containing synthetic turn mimetic structures in the turn region of Aβ40 and Aβ16-35, replacing 2 amino acids in the turn-region G25 - K28. The structure of the turn mimic induces both, acceleration of fibrillation and the complete inhibition of fibrillation, confirming the importance of the turn region on the aggregation. Replacing position G25-S26 provided the best inhibition effect for both beta-turn mimetics, the bicyclic BTD 1 and the aromatic TAA 2, while positions N27-K28 and V24-G25 showed only weaker or no inhibitory effects. When comparing different turn mimetics at the same position (G25-S26), conjugate 1a bearing the BTD turn showed the best inhibition of Aβ40 aggregation, while 5-amino-valeric acid 4a showed the weakest effect. Thus there is a pronounced impact on fibrillation with the chemical nature of the embedded beta-turn-mimic: the conformationally constrained turns 1 and 2 lead to a significantly reduced fibrillation, even inhibiting fibrillation of native Aβ40 when added in amounts down to 1/10, whereas the more flexible beta-turn-mimics 4-amino-benzoic acid 3a and 5-amino-valeric acid 4a lead to enhanced fibrillation. Toxicity-testing of the most successful conjugate showed only minor toxicity in cell-viability assays using the N2a cell line. Structural downsizing lead to the short fragment BTD/peptide Aβ16-35 as inhibitor of the aggregation of Aβ40, opening large potential for further small peptide based inhibitors.
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Affiliation(s)
- Stefanie Deike
- Department of Chemistry, Martin Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120 Halle, Germany
| | - Sven Rothemund
- Core Unit Peptid-Technologien, University Leipzig, Liebigstr. 21, 04103 Leipzig, Germany
| | - Bruno Voigt
- Department of Physics, Martin Luther University Halle-Wittenberg, Betty-Heimannstrasse 7 4, 06120 Halle, Germany
| | - Suman Samantray
- Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Birgit Strodel
- Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, 52428 Jülich, Germany; Institute of Theoretical and Computational Chemistry, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
| | - Wolfgang H Binder
- Department of Chemistry, Martin Luther University Halle-Wittenberg, Von-Danckelmann-Platz 4, 06120 Halle, Germany.
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13
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14
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Centore R, Totsingan F, Amason AC, Lyons S, Zha RH, Gross RA. Self-Assembly-Assisted Kinetically Controlled Papain-Catalyzed Formation of mPEG- b-Phe(Leu) x. Biomacromolecules 2020; 21:493-507. [PMID: 31820938 DOI: 10.1021/acs.biomac.9b01237] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Self-assembling peptide materials are promising next-generation materials with applications that include tissue engineering scaffolds, drug delivery, bionanomedicine, and enviro-responsive materials. Despite these advances, synthetic methods to form peptides and peptide-polymer conjugates still largely rely on solid-phase peptide synthesis (SPPS) and N-carboxyanhydride ring-opening polymerization (NCA-ROP), while green methods remain largely undeveloped. This work demonstrates a protease-catalyzed peptide synthesis (PCPS) capable of directly grafting leucine ethyl ester (Leu-OEt) from the C-terminus of a methoxy poly(ethylene glycol)-phenylalanine ethyl ester macroinitiator in a one-pot, aqueous reaction. By using the natural tendency of the growing hydrophobic peptide segment to self-assemble, a large narrowing of the (Leu)x distributions for both mPEG45-b-Phe(Leu)x and oligo(Leu)x coproducts, relative to oligo(Leu)x synthesized in the absence of a macroinitiator (mPEG45-Phe-OEt), was achieved. A mechanism is described where in situ β-sheet coassembly of mPEG45-b-Phe(Leu)x and oligo(Leu)x coproducts during polymerization prevents peptide hydrolysis, providing a means to control the degree of polymerization (DP) and dispersity of diblock (Leu)x segments (matrix-assisted laser desorption time-of-flight (MALDI-TOF) x = 5.1, dispersity ≤ 1.02). The use of self-assembly to control the uniformity of peptides synthesized by PCPS paves the way for precise peptide block copolymer architectures with various polymer backbones and amino acid compositions synthesized by a green process.
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15
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Singh R, Mishra NK, Singh N, Rawal P, Gupta P, Joshi KB. Transition metal ions induced secondary structural transformation in a hydrophobized short peptide amphiphile. NEW J CHEM 2020. [DOI: 10.1039/d0nj01501f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Transition metal ions mediate the secondary structural transformation of hydrophobized sPA and can be applied to the design and development of stimuli-responsive nanomaterials.
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Affiliation(s)
- Ramesh Singh
- Department of Chemistry
- School of Chemical Science and Technology
- Dr Harisingh Gour Central University
- Sagar
- India
| | | | - Narendra Singh
- Department of Chemistry
- Indian Institute of Technology
- Kanpur
- India
| | - Parveen Rawal
- Department of Chemistry
- Indian Institute of Technology
- Roorkee 247667
- India
| | - Puneet Gupta
- Department of Chemistry
- Indian Institute of Technology
- Roorkee 247667
- India
| | - Khashti Ballabh Joshi
- Department of Chemistry
- School of Chemical Science and Technology
- Dr Harisingh Gour Central University
- Sagar
- India
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16
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Liu Y, Shi L, Zhu B, Su Y, Li H, Zhu X. Paclitaxel-tyroserleutide Conjugates Self-assembly into Nanocarrier for Drug Delivery. LETT DRUG DES DISCOV 2019. [DOI: 10.2174/1570180815666180803124625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Background:
The drug-drug self-assembly was considered as a simple and efficient approach
to prepare high drug loading nano-drug carriers and present new opportunities for cancer therapeutics.
The strategy of PTX amphiphiles preparation would be a possible way to solve the poor water solubility
of PTX.
Methods:
The PTX-YSL conjugate were synthesized and characterized. The PTX-YSL nanocarriers
was prepared by a simple self-assembly method. In vitro cell studies and pharmacokinetic studies were
evaluated for their in vitro anti-tumor activities and blood retention time.
Results:
The structures of PTX-YSL conjugate were confirmed by LC-MS, 1H NMR and FTIR. The
size and morphology of the PTX-YSL self-assembled nanocarriers were observed with TEM and DLS.
PTX-YSL nanocarriers could facilitate cellular uptake and had low cytotoxicity. PTX-YSL nanocarriers
have longer blood retention for enhancing accumulation in the tumor tissues via EPR effect.
Conclusion:
This drug delivery system formed by PTX-YSL conjugates constitutes a promising and
effective drug carrier in cancer therapy.
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Affiliation(s)
- Yongjia Liu
- Instrumental Analysis Center, State Key Laboratory of Metal Matrix Composites, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 200240 Shanghai, China
| | - Leilei Shi
- Instrumental Analysis Center, State Key Laboratory of Metal Matrix Composites, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 200240 Shanghai, China
| | - Bangshang Zhu
- Instrumental Analysis Center, State Key Laboratory of Metal Matrix Composites, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 200240 Shanghai, China
| | - Yue Su
- Instrumental Analysis Center, State Key Laboratory of Metal Matrix Composites, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 200240 Shanghai, China
| | - Hui Li
- Department of Radiology, Affiliated 6th People’s Hospital, Shanghai Jiao Tong University, 200233 Shanghai, China
| | - Xinyuan Zhu
- Instrumental Analysis Center, State Key Laboratory of Metal Matrix Composites, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 200240 Shanghai, China
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17
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Canalp MB, Meister A, Binder WH. Secondary structure of end group functionalized oligomeric-l-lysines: investigations of solvent and structure dependent helicity. RSC Adv 2019; 9:21707-21714. [PMID: 35518853 PMCID: PMC9066437 DOI: 10.1039/c9ra03099a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Accepted: 07/05/2019] [Indexed: 11/21/2022] Open
Abstract
Fibrillation of supramolecular building blocks represents an important model system for complex proteins and peptides, such as amyloidogenic proteins, displaying aggregation and subsequent collapse of their biological functions. In this work, we synthesized narrow-dispersed, end group-telechelic, oligomeric-(l-lysine(carboxybenzyl (Z)/trifluoroacetyl (TFA))) n s (n = 3-33) as a model system for studying assembly and secondary structure formation, prepared via ring opening polymerization (ROP) of N-carboxyanhydrides (NCA). Our primary goal was to understand the influence of amino acid chain length and end group-modification on the secondary structure and fibrillation of the oligo-Z/TFA-protected lysines. Synthesis was accomplished by initiation of ROP with 11-amino-undecene, followed by complete chain end functionalization reactions of the N-terminus by 10-undecenoyl-chloride. The so obtained oligomeric-(l-lysine(Z/TFA)) n s were fractionated according to their number of repeating units (n) with preparative GPC using DMF as the eluent. As proven by MALDI-ToF MS, 1H-NMR-spectroscopy and analytical GPC, they were separated into fractions with low polydispersity (Đ) values, ranging from 1.02-1.08. Secondary structural investigations of these narrowly-dispersed oligomeric-(l-lysine(Z/TFA)) n s (n = 33 ± 6, n = 18 ± 6, n = 12 ± 4, n = 5 ± 2) were accomplished by CD spectroscopy in TFE and HFIP, indicating that TFE was able to induce/stabilize the formation of α-helicity. Fibril formation of oligomeric-(l-lysine(Z/TFA)) n s with shorter chain lengths (n = 7 and n = 3) were chosen to investigate the effect of the number of repeating units' role on the self-assembly of the oligomers in TFE. TEM images of these selected fractions, f19 with n = 7 and f28 with n = 3, showed that fibrillization occured and the formation of a dense fibrillar mesh was observed when the amino acid chain length is equal to 7. Therefore, the influences of the number of repeating units (n), end-group functionalities (mono- or bis-functional) and the choice of solvents (TFE or HFIP) on the propensity to form helical structure allowed us to calibrate their secondary structure.
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Affiliation(s)
- Merve Basak Canalp
- Faculty of Natural Science II (Chemistry, Physics and Mathematics), Martin Luther University Halle-Wittenberg von-Danckelmann-Platz 4 Halle (Saale) D-06120 Germany
| | - Annette Meister
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg Kurt-Mothes-Straße 3a Halle (Saale) D-06120 Germany
| | - Wolfgang H Binder
- Faculty of Natural Science II (Chemistry, Physics and Mathematics), Martin Luther University Halle-Wittenberg von-Danckelmann-Platz 4 Halle (Saale) D-06120 Germany
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18
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Qi R, Liu J, Zhang N, Ji X, Han Y, Wang Y. Assembly and Evolution of Gemini-Type Peptide Amphiphile with a Di-Lysine Spacer. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:6154-6160. [PMID: 30983363 DOI: 10.1021/acs.langmuir.9b00688] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Peptide amphiphiles (PAs) can self-assemble into a variety of supramolecular structures with excellent biofunctions. However, their assembly with time has rarely been observed and reported. Here, we find that a novel gemini-type PA [12-(Lys)2-12], taking two lysine (Lys) groups as the spacer, shows an obvious assembly and evolution process with time. Driven by the strong hydrophobic interaction between the alkyl chains as well as the electrostatic force and hydrogen bonding among the peptide spacers, the 12-(Lys)2-12 molecules first self-assemble into vesicles and then transform into fibrils, ribbons, and belts with time. If replacing the -(Lys)2- spacer with four lysine groups [-(Lys)4-] or two glutamic acid groups [-(Glu)2-], the PA molecules do not show the aggregate growth with time. This indicates that the lysine structure and its length are important structural factors contributing to the dynamic aggregate evolution behavior. More interestingly, this assembly and evolution behavior is highly dependent on 12-(Lys)2-12 concentration. Only in the proper concentration region (0.5-0.7 mM), the self-assembly displays the aggregate growth with time. At lower or higher concentrations, the aggregate growth is largely delayed or inhibited. Moreover, we also find that the aggregate growth of 12-(Lys)2-12 is related to the fibril solubilization temperature ( Tf→s). The faster aggregate growth occurs when the temperature is much lower than Tf→s. This work gains new insights into the evolution of the self-assembling structures of peptide amphiphiles.
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Affiliation(s)
- Ruilian Qi
- University of Chinese Academy of Sciences , Beijing 100049 , P. R. China
| | - Jian Liu
- University of Chinese Academy of Sciences , Beijing 100049 , P. R. China
| | - Na Zhang
- University of Chinese Academy of Sciences , Beijing 100049 , P. R. China
| | | | | | - Yilin Wang
- University of Chinese Academy of Sciences , Beijing 100049 , P. R. China
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19
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Lombardi L, Shi Y, Falanga A, Galdiero E, de Alteriis E, Franci G, Chourpa I, Azevedo HS, Galdiero S. Enhancing the Potency of Antimicrobial Peptides through Molecular Engineering and Self-Assembly. Biomacromolecules 2019; 20:1362-1374. [PMID: 30735368 DOI: 10.1021/acs.biomac.8b01740] [Citation(s) in RCA: 66] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Healthcare-associated infections resulting from bacterial attachment and biofilm formation on medical implants are posing significant challenges in particular with the emergence of bacterial resistance to antibiotics. Here, we report the design, synthesis and characterization of self-assembled nanostructures, which integrate on their surface antibacterial peptides. The antibacterial WMR peptide, which is a modification of the native sequence of the myxinidin, a marine peptide isolated from the epidermal mucus of hagfish, was used considering its enhanced activity against Gram-negative bacteria. WMR was linked to a peptide segment of aliphatic residues (AAAAAAA) containing a lipidic tail (C19H38O2) attached to the ε-amino of a terminal lysine to generate a peptide amphiphile (WMR PA). The self-assembly of the WMR PA alone, or combined with coassembling shorter PAs, was studied using spectroscopy and microscopy techniques. The designed PAs were shown to self-assemble into stable nanofiber structures and these nanoassemblies significantly inhibit biofilm formation and eradicate the already formed biofilms of Pseudomonas aeruginosa (Gram-negative bacteria) and Candida albicans (pathogenic fungus) when compared to the native WMR peptide. Our results provide insights into the design of peptide based supramolecular assemblies with antibacterial activity, and establish an innovative strategy to develop self-assembled antimicrobial materials for biomedical applications.
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Affiliation(s)
- Lucia Lombardi
- Department of Pharmacy, School of Medicine , University of Naples Federico II , Via Mezzocannone 16 , 80134 Naples , Italy.,School of Engineering and Materials Science , Queen Mary, University of London , Mile End Road , London E1 4NS , United Kingdom
| | - Yejiao Shi
- School of Engineering and Materials Science , Queen Mary, University of London , Mile End Road , London E1 4NS , United Kingdom
| | - Annarita Falanga
- CIRPEB, University of Naples Federico II , Via Mezzocannone 16 , 80134 Naples , Italy.,Department of Agricultural Science , University of Naples Federico II , via Università 100 , 80055 Naples , Italy
| | - Emilia Galdiero
- Department of Biology , University of Naples Federico II , via Cinthia , 80100 Naples , Italy
| | - Elisabetta de Alteriis
- Department of Biology , University of Naples Federico II , via Cinthia , 80100 Naples , Italy
| | - Gianluigi Franci
- Department of Experimental Medicine , University of Campania Luigi Vanvitelli , via Costantinopoli 16 , 80138 Naples , Italy
| | - Igor Chourpa
- EA 6295 Nanomédicaments et Nanosondes, Université François-Rabelais de Tours , 31 avenue Monge , 37000 Tours , France
| | - Helena S Azevedo
- School of Engineering and Materials Science , Queen Mary, University of London , Mile End Road , London E1 4NS , United Kingdom
| | - Stefania Galdiero
- Department of Pharmacy, School of Medicine , University of Naples Federico II , Via Mezzocannone 16 , 80134 Naples , Italy.,CIRPEB, University of Naples Federico II , Via Mezzocannone 16 , 80134 Naples , Italy
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20
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Thamizhanban A, Lalitha K, Nagarajan S. Self-Assembled Soft Materials for Energy and Environmental Applications. ACTA ACUST UNITED AC 2019. [DOI: 10.1007/978-3-030-04474-9_10] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
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21
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Evgrafova Z, Voigt B, Roos AH, Hause G, Hinderberger D, Balbach J, Binder WH. Modulation of amyloid β peptide aggregation by hydrophilic polymers. Phys Chem Chem Phys 2019; 21:20999-21006. [DOI: 10.1039/c9cp02683e] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Careful balance of hydrophilicity of precisely engineered polymers alters aggregation of the amyloidogenic protein Aβ1–40.
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Affiliation(s)
- Zhanna Evgrafova
- Martin-Luther University Halle-Wittenberg
- Faculty of Natural Science II
- Institute of Chemistry
- D-06120 Halle (Saale)
- Germany
| | - Bruno Voigt
- Martin-Luther University Halle-Wittenberg
- Faculty of Natural Science II
- Institute of Physics
- D-06120 Halle (Saale)
- Germany
| | - Andreas H. Roos
- Martin-Luther University Halle-Wittenberg
- Faculty of Natural Science II
- Institute of Chemistry
- D-06120 Halle (Saale)
- Germany
| | - Gerd Hause
- Martin-Luther University Halle-Wittenberg
- Biocenter
- D-06120 Halle (Saale)
- Germany
| | - Dariush Hinderberger
- Martin-Luther University Halle-Wittenberg
- Faculty of Natural Science II
- Institute of Chemistry
- D-06120 Halle (Saale)
- Germany
| | - Jochen Balbach
- Martin-Luther University Halle-Wittenberg
- Faculty of Natural Science II
- Institute of Physics
- D-06120 Halle (Saale)
- Germany
| | - Wolfgang H. Binder
- Martin-Luther University Halle-Wittenberg
- Faculty of Natural Science II
- Institute of Chemistry
- D-06120 Halle (Saale)
- Germany
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22
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Castelletto V, Hamley IW, Seitsonen J, Ruokolainen J, Harris G, Bellmann-Sickert K, Beck-Sickinger AG. Conformation and Aggregation of Selectively PEGylated and Lipidated Gastric Peptide Hormone Human PYY3–36. Biomacromolecules 2018; 19:4320-4332. [DOI: 10.1021/acs.biomac.8b01209] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Valeria Castelletto
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, United Kingdom
| | - Ian W. Hamley
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, United Kingdom
| | - Jani Seitsonen
- Department of Applied Physics, Aalto University School of Science,
P.O. Box 15100, FI-00076 Aalto, Finland
| | - Janne Ruokolainen
- Department of Applied Physics, Aalto University School of Science,
P.O. Box 15100, FI-00076 Aalto, Finland
| | - Gemma Harris
- Diamond Light Source Ltd., Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, United Kingdom
| | - Kathrin Bellmann-Sickert
- Institute of Biochemistry, Faculty of Life Science, Leipzig University, Brüderstrasse 3, D 04103 Leipzig, Germany
| | - Annette G. Beck-Sickinger
- Institute of Biochemistry, Faculty of Life Science, Leipzig University, Brüderstrasse 3, D 04103 Leipzig, Germany
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23
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Radvar E, Azevedo HS. Supramolecular Peptide/Polymer Hybrid Hydrogels for Biomedical Applications. Macromol Biosci 2018; 19:e1800221. [PMID: 30101512 DOI: 10.1002/mabi.201800221] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 07/14/2018] [Indexed: 12/23/2022]
Abstract
Peptides and polymers are the "elite" building blocks in hydrogel fabrication where the typical approach consists of coupling specific peptide sequences (cell adhesive and/or enzymatically cleavable) to polymer chains aiming to obtain controlled cell responses (adhesion, migration, differentiation). However, the use of polymers and peptides as structural components for fabricating supramolecular hydrogels is less well established. Here, the literature on the design of peptide/polymer systems for self-assembly into hybrid hydrogels, as either peptide-polymer conjugates or combining both components individually, is reviewed. The properties (stiffness, mesh structure, responsiveness, and biocompatibility) of the hydrogels are then discussed from the viewpoint of their potential biomedical applications.
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Affiliation(s)
- Elham Radvar
- School of Engineering and Materials Science, Institute of Bioengineering, Queen Mary University of London, Mile End Road, E1 4NS, UK
| | - Helena S Azevedo
- School of Engineering and Materials Science, Institute of Bioengineering, Queen Mary University of London, Mile End Road, E1 4NS, UK
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24
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Saikia N, Johnson F, Waters K, Pandey R. Dynamics of self-assembled cytosine nucleobases on graphene. NANOTECHNOLOGY 2018; 29:195601. [PMID: 29461252 DOI: 10.1088/1361-6528/aab0ea] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Molecular self-assembly of cytosine (C n ) bases on graphene was investigated using molecular dynamics methods. For free-standing C n bases, simulation conditions (gas versus aqueous) determine the nature of self-assembly; the bases prefer to aggregate in the gas phase and are stabilized by intermolecular H-bonds, while in the aqueous phase, the water molecules disrupt base-base interactions, which facilitate the formation of π-stacked domains. The substrate-induced effects, on the other hand, find the polarity and donor-acceptor sites of the bases to govern the assembly process. For example, in the gas phase, the assembly of C n bases on graphene displays short-range ordered linear arrays stabilized by the intermolecular H-bonds. In the aqueous phase, however, there are two distinct configurations for the C n bases assembly on graphene. For the first case corresponding to low surface coverage, the bases are dispersed on graphene and are isolated. The second configuration archetype is disordered linear arrays assembled with medium and high surface coverage. The simulation results establish the role of H-bonding, vdW π-stacking, and the influence of graphene surface towards the self-assembly. The ability to regulate the assembly into well-defined patterns can aid in the design of self-assembled nanostructures for the next-generation DNA based biosensors and nanoelectronic devices.
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25
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Microbial nanowires - Electron transport and the role of synthetic analogues. Acta Biomater 2018; 69:1-30. [PMID: 29357319 DOI: 10.1016/j.actbio.2018.01.007] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 01/07/2018] [Accepted: 01/09/2018] [Indexed: 02/07/2023]
Abstract
Electron transfer is central to cellular life, from photosynthesis to respiration. In the case of anaerobic respiration, some microbes have extracellular appendages that can be utilised to transport electrons over great distances. Two model organisms heavily studied in this arena are Shewanella oneidensis and Geobacter sulfurreducens. There is some debate over how, in particular, the Geobacter sulfurreducens nanowires (formed from pilin nanofilaments) are capable of achieving the impressive feats of natural conductivity that they display. In this article, we outline the mechanisms of electron transfer through delocalised electron transport, quantum tunnelling, and hopping as they pertain to biomaterials. These are described along with existing examples of the different types of conductivity observed in natural systems such as DNA and proteins in order to provide context for understanding the complexities involved in studying the electron transport properties of these unique nanowires. We then introduce some synthetic analogues, made using peptides, which may assist in resolving this debate. Microbial nanowires and the synthetic analogues thereof are of particular interest, not just for biogeochemistry, but also for the exciting potential bioelectronic and clinical applications as covered in the final section of the review. STATEMENT OF SIGNIFICANCE Some microbes have extracellular appendages that transport electrons over vast distances in order to respire, such as the dissimilatory metal-reducing bacteria Geobacter sulfurreducens. There is significant debate over how G. sulfurreducens nanowires are capable of achieving the impressive feats of natural conductivity that they display: This mechanism is a fundamental scientific challenge, with important environmental and technological implications. Through outlining the techniques and outcomes of investigations into the mechanisms of such protein-based nanofibrils, we provide a platform for the general study of the electronic properties of biomaterials. The implications are broad-reaching, with fundamental investigations into electron transfer processes in natural and biomimetic materials underway. From these studies, applications in the medical, energy, and IT industries can be developed utilising bioelectronics.
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26
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Dhasaiyan P, Prevost S, Baccile N, Prasad BLV. pH- and Time-Resolved in Situ SAXS Study of Self-Assembled Twisted Ribbons Formed by Elaidic Acid Sophorolipids. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:2121-2131. [PMID: 29257893 DOI: 10.1021/acs.langmuir.7b03164] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Conditions that favor the helical structure formation in structurally similar sophorolipids (SLs), that is, elaidic acid SLs (having a trans double bond between the C9 and C10 positions of the alkyl chain) and stearic acid SLs (no double bond), are presented here. The helical self-assembled structures formed by elaidic acid SLs were independent of pH and also were mediated by a micellar intermediate. On the other hand, the stearic acid SLs formed helical structures under low pH condition only. Astonishingly, the formation routes were found to be different, albeit the molecular geometry of both SLs is similar. Even if a conclusive mechanistic understanding must await further work, our studies strongly point out that the noncovalent weak interactions in elaidic acid SLs are able to overcome the electrostatic repulsions of the sophorolipid carboxylate groups at basic pH and facilitating the formation of helical structures. On the other hand, the hydrophobic interactions in stearic acid SLs endow the helical structures with extra stability, making them less vulnerable to dissolution upon heating.
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Affiliation(s)
- Prabhu Dhasaiyan
- Physical and Materials Chemistry Division, CSIR - National Chemical Laboratory , Pune - 411008, India
| | - Sylvain Prevost
- ESRF - The European Synchrotron , High Brilliance Beamline ID02, 38043 Grenoble, France
| | - Niki Baccile
- Sorbonne Université, Centre National de la Recherche Scientifique, Laboratoire de Chimie de la Matière Condensée de Paris , LCMCP, F-75005 Paris, France
| | - Bhagavatula L V Prasad
- Physical and Materials Chemistry Division, CSIR - National Chemical Laboratory , Pune - 411008, India
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27
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Kumar V, Singh R, Joshi KB. Biotin–avidin interaction triggers conversion of triskelion peptide nanotori into nanochains. NEW J CHEM 2018. [DOI: 10.1039/c7nj04248e] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Triskelion biotinylated peptide is self-assembled into nanotorus structures followed by dimerization and chain formation in the presence of avidin.
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Affiliation(s)
- Vikas Kumar
- Dr Harisingh Gour Central University Sagar
- India
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28
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Paik BA, Mane SR, Jia X, Kiick KL. Responsive Hybrid (Poly)peptide-Polymer Conjugates. J Mater Chem B 2017; 5:8274-8288. [PMID: 29430300 PMCID: PMC5802422 DOI: 10.1039/c7tb02199b] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
(Poly)peptide-polymer conjugates continue to garner significant interest in the production of functional materials given their composition of natural and synthetic building blocks that confer select and synergistic properties. Owing to opportunities to design predefined architectures and structures with different morphologies, these hybrid conjugates enable new approaches for producing micro- or nanomaterials. Their modular design enables the incorporation of multiple responsive properties into a single conjugate. This review presents recent advances in (poly)peptide-polymer conjugates for drug-delivery applications, with a specific focus on the utility of the (poly)peptide component in the assembly of particles and nanogels, as well as the role of the peptide in triggered drug release.
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Affiliation(s)
- Bradford A Paik
- Department of Materials Science and Engineering, University of Delaware, 201 DuPont Hall, Newark, DE 19716-3106
| | - Shivshankar R Mane
- The Institude For Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstr. 18, 76128 Karlsruhe, Germany
| | - Xinqiao Jia
- Department of Materials Science and Engineering, University of Delaware, 201 DuPont Hall, Newark, DE 19716-3106
- Department of Biomedical Engineering, University of Delaware, 150 Academy Street, 161 Colburn Lab, Newark, DE 19716-3106
- Delaware Biotechnology Institute, 15 Innovation Way, Newark, DE 19711
| | - Kristi L Kiick
- Department of Materials Science and Engineering, University of Delaware, 201 DuPont Hall, Newark, DE 19716-3106
- Department of Biomedical Engineering, University of Delaware, 150 Academy Street, 161 Colburn Lab, Newark, DE 19716-3106
- Delaware Biotechnology Institute, 15 Innovation Way, Newark, DE 19711
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29
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Basak S, Singh I, Ferranco A, Syed J, Kraatz HB. On the Role of Chirality in Guiding the Self-Assembly of Peptides. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201706162] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Shibaji Basak
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Ishwar Singh
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Annaleizle Ferranco
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Jebreil Syed
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Heinz-Bernhard Kraatz
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
- Department of Chemistry; University of Toronto; 80 St. George Street Toronto Ontario M5S 3H6 Canada
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30
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Basak S, Singh I, Ferranco A, Syed J, Kraatz HB. On the Role of Chirality in Guiding the Self-Assembly of Peptides. Angew Chem Int Ed Engl 2017; 56:13288-13292. [DOI: 10.1002/anie.201706162] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Revised: 08/13/2017] [Indexed: 01/02/2023]
Affiliation(s)
- Shibaji Basak
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Ishwar Singh
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Annaleizle Ferranco
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Jebreil Syed
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
| | - Heinz-Bernhard Kraatz
- Department of Physical and Environmental Sciences; University of Toronto; 1265 Military Trail Toronto M1C 1A4 Canada
- Department of Chemistry; University of Toronto; 80 St. George Street Toronto Ontario M5S 3H6 Canada
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31
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Cao Q, He N, Wang Y, Lu Z. Self-assembled nanostructures from amphiphilic globular protein–polymer hybrids. Polym Bull (Berl) 2017. [DOI: 10.1007/s00289-017-2176-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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32
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Su H, Wang Y, Anderson CF, Koo JM, Wang H, Cui H. Recent progress in exploiting small molecule peptides as supramolecular hydrogelators. CHINESE JOURNAL OF POLYMER SCIENCE 2017. [DOI: 10.1007/s10118-017-1998-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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33
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Okada Y, Asama H, Wakamatsu H, Chiba K, Kamiya H. Hydrophobic Magnetic Nanoparticle Assisted One-Pot Liquid-Phase Peptide Synthesis. European J Org Chem 2017. [DOI: 10.1002/ejoc.201700697] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Yohei Okada
- Department of Chemical Engineering; Tokyo University of Agriculture and Technology; 2-24-16 Naka-cho, Koganei 184-8588 Tokyo Japan
| | - Hitomi Asama
- Department of Chemical Engineering; Tokyo University of Agriculture and Technology; 2-24-16 Naka-cho, Koganei 184-8588 Tokyo Japan
| | - Hiroki Wakamatsu
- Department of Applied Biological Science; Tokyo University of Agriculture and Technology; 3-5-8 Saiwai-cho, Fuchu 183-8509 Tokyo Japan
| | - Kazuhiro Chiba
- Department of Applied Biological Science; Tokyo University of Agriculture and Technology; 3-5-8 Saiwai-cho, Fuchu 183-8509 Tokyo Japan
| | - Hidehiro Kamiya
- Department of Chemical Engineering; Tokyo University of Agriculture and Technology; 2-24-16 Naka-cho, Koganei 184-8588 Tokyo Japan
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Song SJ, Lee S, Ryu KS, Choi JS. Amphiphilic Peptide Nanorods Based on Oligo-Phenylalanine as a Biocompatible Drug Carrier. Bioconjug Chem 2017; 28:2266-2276. [DOI: 10.1021/acs.bioconjchem.7b00247] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Su Jeong Song
- Department
of Biochemistry, College of Natural Sciences, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 305-764, Republic of Korea
| | - Seulgi Lee
- Department
of Biochemistry, College of Natural Sciences, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 305-764, Republic of Korea
| | - Kyoung-Seok Ryu
- Protein
Structure Group, Korea Basic Science Institute, 162 Yeongudanji-ro, Ochang-eup, Cheongwon-gu, Cheongju, Chungcheongbuk-Do 281-19, Republic of Korea
| | - Joon Sig Choi
- Department
of Biochemistry, College of Natural Sciences, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon 305-764, Republic of Korea
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Qiao ZY, Lai WJ, Lin YX, Li D, Nan XH, Wang Y, Wang H, Fang QJ. Polymer–KLAK Peptide Conjugates Induce Cancer Cell Death through Synergistic Effects of Mitochondria Damage and Autophagy Blockage. Bioconjug Chem 2017; 28:1709-1721. [DOI: 10.1021/acs.bioconjchem.7b00176] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
| | | | - Yao-Xin Lin
- University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Dan Li
- University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Xiao-Hui Nan
- University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Yi Wang
- University of Chinese Academy of Sciences, Beijing 100049, PR China
| | | | - Qiao-Jun Fang
- University of Chinese Academy of Sciences, Beijing 100049, PR China
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Tritschler U, Pearce S, Gwyther J, Whittell GR, Manners I. 50th Anniversary Perspective: Functional Nanoparticles from the Solution Self-Assembly of Block Copolymers. Macromolecules 2017. [DOI: 10.1021/acs.macromol.6b02767] [Citation(s) in RCA: 238] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Ulrich Tritschler
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Sam Pearce
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Jessica Gwyther
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - George R. Whittell
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Ian Manners
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
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Affiliation(s)
| | | | | | - Ting Xu
- Material
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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