1
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El-Maghrabey M, Kishikawa N, Kuroda N. Unique biomedical application of fluorescence derivatization based on palladium-catalyzed coupling reactions for HPLC analysis of pharmaceuticals and biomolecules. Biomed Chromatogr 2024; 38:e5857. [PMID: 38509750 DOI: 10.1002/bmc.5857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/31/2024] [Accepted: 02/13/2024] [Indexed: 03/22/2024]
Abstract
Palladium-catalyzed coupling reactions are versatile and powerful tools for the construction of carbon-carbon bonds in organic synthesis. Although these reactions have favorable features that proceed selectively in mild reaction conditions using aqueous organic solvents, no attention has been given to their application in the field of biomedical analysis. Therefore, we focused on these reactions and evaluated the scope and limitations of their analytical performance. In this review, we describe the pros and cons and future trends of fluorescence derivatization of pharmaceuticals and biomolecules based on palladium-catalyzed coupling reactions such as Suzuki-Miyaura coupling, Mizoroki-Heck coupling, and Sonogashira coupling reactions for HPLC analysis.
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Affiliation(s)
- Mahmoud El-Maghrabey
- Graduate School of Biomedical Sciences, Course of Pharmaceutical Sciences, Nagasaki University, Nagasaki, Japan
- Pharmaceutical Analytical Chemistry Department, Faculty of Pharmacy, Mansoura University, Mansoura, Egypt
| | - Naoya Kishikawa
- Graduate School of Biomedical Sciences, Course of Pharmaceutical Sciences, Nagasaki University, Nagasaki, Japan
| | - Naotaka Kuroda
- Graduate School of Biomedical Sciences, Course of Pharmaceutical Sciences, Nagasaki University, Nagasaki, Japan
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2
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Ayuso-Carrillo J, Fina F, Galleposo EC, Ferreira RR, Mondal PK, Ward BD, Bonifazi D. One-Step Catalyst-Transfer Macrocyclization: Expanding the Chemical Space of Azaparacyclophanes. J Am Chem Soc 2024; 146:16440-16457. [PMID: 38848549 PMCID: PMC11191698 DOI: 10.1021/jacs.4c02319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 05/22/2024] [Accepted: 05/23/2024] [Indexed: 06/09/2024]
Abstract
In this paper, we report on a one-step catalyst-transfer macrocyclization (CTM) reaction, based on the Pd-catalyzed Buchwald-Hartwig cross-coupling reaction, selectively affording only cyclic structures. This route offers a versatile and efficient approach to synthesize aza[1n]paracyclophanes (APCs) featuring diverse functionalities and lumens. The method operates at mild reaction temperatures (40 °C) and short reaction times (∼2 h), delivering excellent isolated yields (>75% macrocycles) and up to 30% of a 6-membered cyclophane, all under nonhigh-dilution concentrations (35-350 mM). Structural insights into APCs reveal variations in product distribution based on different endocyclic substituents, with steric properties of exocyclic substituents having minimal influence on the macrocyclization. Aryl-type endocyclic substituents predominantly yield 6-membered macrocycles, while polycyclic aromatic units such as fluorene and carbazole favor 4-membered species. Experimental and computational studies support a proposed mechanism of ring-walking catalyst transfer that promotes the macrocycle formation. It has been found that the macrocyclization is driven by the formation of cyclic conformers during the oligomerization step favoring an intramolecular C-N bond formation that, depending on the cycle size, hinges on either preorganization effect or kinetic increase of the reductive elimination step or a combination of the two. The CTM process exhibits a "living" behavior, facilitating sequential synthesis of other macrocycles by introducing relevant monomers, thus providing a practical synthetic platform for chemical libraries. Notably, CTM operates both under diluted and concentrated regimes, offering scalability potential, unlike typical macrocyclization reactions usually operating in the 0.1-1 mM range.
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Affiliation(s)
- Josue Ayuso-Carrillo
- Institute
of Organic Chemistry, University of Vienna, Währinger Strasse 38, Vienna A-1090, Austria
| | - Federica Fina
- Institute
of Organic Chemistry, University of Vienna, Währinger Strasse 38, Vienna A-1090, Austria
| | - El Czar Galleposo
- Institute
of Organic Chemistry, University of Vienna, Währinger Strasse 38, Vienna A-1090, Austria
| | - Rúben R. Ferreira
- Institute
of Organic Chemistry, University of Vienna, Währinger Strasse 38, Vienna A-1090, Austria
| | - Pradip Kumar Mondal
- Elettra
Sincrotrone Trieste S.C.p.A., Strada Statale 14−km 163, 5 in Area Science
Park, Basovizza, Trieste 34149, Italy
| | - Benjamin D. Ward
- School
of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, U.K.
| | - Davide Bonifazi
- Institute
of Organic Chemistry, University of Vienna, Währinger Strasse 38, Vienna A-1090, Austria
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3
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Parte LG, Fernández S, Sandonís E, Guerra J, López E. Transition-Metal-Catalyzed Transformations for the Synthesis of Marine Drugs. Mar Drugs 2024; 22:253. [PMID: 38921564 PMCID: PMC11204618 DOI: 10.3390/md22060253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/23/2024] [Accepted: 05/25/2024] [Indexed: 06/27/2024] Open
Abstract
Transition metal catalysis has contributed to the discovery of novel methodologies and the preparation of natural products, as well as new chances to increase the chemical space in drug discovery programs. In the case of marine drugs, this strategy has been used to achieve selective, sustainable and efficient transformations, which cannot be obtained otherwise. In this perspective, we aim to showcase how a variety of transition metals have provided fruitful couplings in a wide variety of marine drug-like scaffolds over the past few years, by accelerating the production of these valuable molecules.
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Affiliation(s)
- Lucía G. Parte
- Department of Organic Chemistry, Science Faculty, University of Valladolid (UVa), Paseo de Belén 7, 47011 Valladolid, Spain; (L.G.P.); (E.S.)
| | - Sergio Fernández
- Department of Chemistry, School of Physical and Chemical Sciences, Queen Mary University of London (QMUL), Mile End Road, London E1 4NS, UK;
| | - Eva Sandonís
- Department of Organic Chemistry, Science Faculty, University of Valladolid (UVa), Paseo de Belén 7, 47011 Valladolid, Spain; (L.G.P.); (E.S.)
| | - Javier Guerra
- Department of Organic Chemistry, Science Faculty, University of Valladolid (UVa), Paseo de Belén 7, 47011 Valladolid, Spain; (L.G.P.); (E.S.)
| | - Enol López
- Department of Organic Chemistry, ITAP, School of Engineering (EII), University of Valladolid (UVa), Dr Mergelina, 47002 Valladolid, Spain
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4
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Tiessler-Sala L, Maréchal JD, Lledós A. Rationalization of a Streptavidin Based Enantioselective Artificial Suzukiase: An Integrative Computational Approach. Chemistry 2024:e202401165. [PMID: 38752552 DOI: 10.1002/chem.202401165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Indexed: 06/06/2024]
Abstract
An Artificial Metalloenzyme (ArM) built employing the streptavidin-biotin technology has been used for the enantioselective synthesis of binaphthyls by means of asymmetric Suzuki-Miyaura cross-coupling reactions. Despite its success, it remains a challenge to understand how the length of the biotin cofactors or the introduction of mutations to streptavidin leads the preferential synthesis of one atropisomer over the other. In this study, we apply an integrated computational modeling approach, including DFT calculations, protein-ligand dockings and molecular dynamics to rationalize the impact of mutations and length of the biotion cofactor on the enantioselectivities of the biaryl product. The results unravel that the enantiomeric differences found experimentally can be rationalized by the disposition of the first intermediate, coming from the oxidative addition step, and the entrance of the second substrate. The work also showcases the difficulties facing to control the enantioselection when engineering ArM to catalyze enantioselective Suzuki-Miyaura couplings and how the combination of DFT calculations, molecular dockings and MD simulations can be used to rationalize artificial metalloenzymes.
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Affiliation(s)
- Laura Tiessler-Sala
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - Jean-Didier Maréchal
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
| | - Agustí Lledós
- Departament de Química, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, 08193, Barcelona, Spain
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5
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Dupont J, Leal BC, Lozano P, Monteiro AL, Migowski P, Scholten JD. Ionic Liquids in Metal, Photo-, Electro-, and (Bio) Catalysis. Chem Rev 2024; 124:5227-5420. [PMID: 38661578 DOI: 10.1021/acs.chemrev.3c00379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Ionic liquids (ILs) have unique physicochemical properties that make them advantageous for catalysis, such as low vapor pressure, non-flammability, high thermal and chemical stabilities, and the ability to enhance the activity and stability of (bio)catalysts. ILs can improve the efficiency, selectivity, and sustainability of bio(transformations) by acting as activators of enzymes, selectively dissolving substrates and products, and reducing toxicity. They can also be recycled and reused multiple times without losing their effectiveness. ILs based on imidazolium cation are preferred for structural organization aspects, with a semiorganized layer surrounding the catalyst. ILs act as a container, providing a confined space that allows modulation of electronic and geometric effects, miscibility of reactants and products, and residence time of species. ILs can stabilize ionic and radical species and control the catalytic activity of dynamic processes. Supported IL phase (SILP) derivatives and polymeric ILs (PILs) are good options for molecular engineering of greener catalytic processes. The major factors governing metal, photo-, electro-, and biocatalysts in ILs are discussed in detail based on the vast literature available over the past two and a half decades. Catalytic reactions, ranging from hydrogenation and cross-coupling to oxidations, promoted by homogeneous and heterogeneous catalysts in both single and multiphase conditions, are extensively reviewed and discussed considering the knowledge accumulated until now.
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Affiliation(s)
- Jairton Dupont
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
- Departamento de Bioquímica y Biología Molecular B e Inmunología, Facultad de Química, Universidad de Murcia, P.O. Box 4021, E-30100 Murcia, Spain
| | - Bárbara C Leal
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| | - Pedro Lozano
- Departamento de Bioquímica y Biología Molecular B e Inmunología, Facultad de Química, Universidad de Murcia, P.O. Box 4021, E-30100 Murcia, Spain
| | - Adriano L Monteiro
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| | - Pedro Migowski
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| | - Jackson D Scholten
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
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6
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Doud EA, Tilden JAR, Treacy JW, Chao EY, Montgomery HR, Kunkel GE, Olivares EJ, Adhami N, Kerr TA, Chen Y, Rheingold AL, Loo JA, Frost CG, Houk KN, Maynard HD, Spokoyny AM. Ultrafast Au(III)-Mediated Arylation of Cysteine. J Am Chem Soc 2024; 146:12365-12374. [PMID: 38656163 PMCID: PMC11152249 DOI: 10.1021/jacs.3c12170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Through mechanistic work and rational design, we have developed the fastest organometallic abiotic Cys bioconjugation. As a result, the developed organometallic Au(III) bioconjugation reagents enable selective labeling of Cys moieties down to picomolar concentrations and allow for the rapid construction of complex heterostructures from peptides, proteins, and oligonucleotides. This work showcases how organometallic chemistry can be interfaced with biomolecules and lead to a range of reactivities that are largely unmatched by classical organic chemistry tools.
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Affiliation(s)
- Evan A. Doud
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - James A. R. Tilden
- Department of Chemistry, University of Bath, Claverton Down, BA2 7AY Bath, United Kingdom
| | - Joseph W. Treacy
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Elaine Y. Chao
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Hayden R. Montgomery
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Grace E. Kunkel
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Eileen J. Olivares
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Nima Adhami
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Tyler A. Kerr
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Yu Chen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Arnold L. Rheingold
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Joseph A. Loo
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Christopher G. Frost
- Department of Chemistry, University of Bath, Claverton Down, BA2 7AY Bath, United Kingdom
| | - K. N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Heather D. Maynard
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Alexander M. Spokoyny
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
- California NanoSystems Institute, University of California, Los Angeles, Los Angeles, California 90095, United States
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7
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Larson NG, Norman JP, Neufeldt SR. Mechanistic Origin of Ligand Effects on Exhaustive Functionalization During Pd-Catalyzed Cross-Coupling of Dihaloarenes. ACS Catal 2024; 14:7127-7135. [PMID: 38911468 PMCID: PMC11192547 DOI: 10.1021/acscatal.4c00646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
We describe a detailed investigation into why bulky ligands-those that enable catalysis at "12e -" Pd0-tend to promote overfunctionalization during Pd-catalyzed cross-couplings of dihalogenated substrates. After one cross-coupling event takes place, PdL initially remains coordinated to the π system of the nascent product. Selectivity for mono- vs. difunctionalization arises from the relative rates of π-decomplexation versus a second oxidative addition. Under the Suzuki coupling conditions in this work, direct dissociation of 12e - PdL from the π-complex cannot outcompete oxidative addition. Instead, Pd must be displaced from the π-complex as 14e - PdL(L') by a second incoming ligand L'. The incoming ligand is another molecule of dichloroarene if the reaction conditions do not include π-coordinating solvents or additives. More overfunctionalization tends to result when increased ligand or substrate sterics raises the energy of the bimolecular transition state for separating 14e - PdL(L') from the mono-cross-coupled product. This work has practical implications for optimizing selectivity in cross-couplings involving multiple halogens. For example, we demonstrate that small coordinating additives like DMSO can largely suppress overfunctionalization and that precatalyst structure can also impact selectivity.
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Affiliation(s)
- Nathaniel G. Larson
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, United States
| | - Jacob P. Norman
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, United States
| | - Sharon R. Neufeldt
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, United States
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8
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Tracy W, Davies GHM, Grant LN, Ganley JM, Moreno J, Cherney EC, Davies HML. Anhydrous and Stereoretentive Fluoride-Enhanced Suzuki-Miyaura Coupling of Immunomodulatory Imide Drug Derivatives. J Org Chem 2024; 89:4595-4606. [PMID: 38452367 PMCID: PMC11002932 DOI: 10.1021/acs.joc.3c02873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/12/2024] [Accepted: 02/17/2024] [Indexed: 03/09/2024]
Abstract
Immunomodulatory imide drugs form the core of many pharmaceutically relevant structures, but Csp2-Csp2 bond formation via metal-catalyzed cross coupling is difficult due to the sensitivity of the glutarimide ring ubiquitous in these structures. We report that replacement of the traditional alkali base with a fluoride source enhances a previously challenging Suzuki-Miyaura coupling on glutarimide-containing compounds with trifluoroborates. These enabling conditions are reactive enough to generate these derivatives in high yields but mild enough to preserve both the glutarimide and its sensitive stereocenter. Experimental and computational data suggest a mechanistically distinct process of π-coordination of the trifluoroborate enabled by these conditions.
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Affiliation(s)
- William
F. Tracy
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Geraint H. M. Davies
- Small
Molecule Drug Discovery, Bristol Myers Squibb, Cambridge, Massachusetts 02140, United States
| | - Lauren N. Grant
- Chemical
Process Development, Bristol Myers Squibb, New Brunswick, New Jersey 08903, United States
| | - Jacob M. Ganley
- Chemical
Process Development, Bristol Myers Squibb, New Brunswick, New Jersey 08903, United States
| | - Jesus Moreno
- Small
Molecule Drug Discovery, Bristol Myers Squibb, San Diego, California 92121, United States
| | - Emily C. Cherney
- Small
Molecule Drug Discovery, Bristol Myers Squibb, Princeton, New Jersey 08543, United States
| | - Huw M. L. Davies
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
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9
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Virdi J, Dusunge A, Handa S. Aqueous Micelles as Solvent, Ligand, and Reaction Promoter in Catalysis. JACS AU 2024; 4:301-317. [PMID: 38425936 PMCID: PMC10900500 DOI: 10.1021/jacsau.3c00605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/13/2023] [Accepted: 12/13/2023] [Indexed: 03/02/2024]
Abstract
Water is considered to be the most sustainable and safest solvent. Micellar catalysis is a significant contributor to the chemistry in water. It promotes pathways involving water-sensitive intermediates and transient catalytic species under micelles' shielding effect while also replacing costly ligands and dipolar-aprotic solvents. However, there is a lack of critical information about micellar catalysis. This includes why it works better than traditional catalysis in organic solvents, why specific rules in micellar catalysis differ from those of conventional catalysis, and how the limitations of micellar catalysis can be addressed in the future. This Perspective aims to highlight the current gaps in our understanding of micellar catalysis and provide an analysis of designer surfactants' origin and essential components. This will also provide a fundamental understanding of micellar catalysis, including how aqueous micelles can simultaneously perform multiple functions such as solvent, ligand, and reaction promoter.
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Affiliation(s)
- Jagdeep
K. Virdi
- Department of Chemistry, University
of Missouri, Columbia, Missouri 65211, United States
| | - Ashish Dusunge
- Department of Chemistry, University
of Missouri, Columbia, Missouri 65211, United States
| | - Sachin Handa
- Department of Chemistry, University
of Missouri, Columbia, Missouri 65211, United States
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10
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Iyer K, Kavthe RD, Lammert RM, Yirak JR, Lipshutz BH. Ligated Pd-Catalyzed Aminations of Aryl/Heteroaryl Halides with Aliphatic Amines under Sustainable Aqueous Micellar Conditions. JACS AU 2024; 4:680-689. [PMID: 38425930 PMCID: PMC10900223 DOI: 10.1021/jacsau.3c00742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 01/17/2024] [Accepted: 01/18/2024] [Indexed: 03/02/2024]
Abstract
Sustainable technology for constructing Pd-catalyzed C-N bonds involving aliphatic amines is reported. A catalytic system that relies on low levels of recyclable precious metal, a known and commercially available ligand, and a recyclable aqueous medium are combined, leading to a newly developed procedure. This new technology can be used in ocean water with equal effectiveness. Applications involving highly challenging reaction partners constituting late-stage functionalization are documented, as is a short but efficient synthesis of the drug naftopidil. Comparisons with existing aminations highlight the many advances being offered.
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Affiliation(s)
| | | | - Robert M. Lammert
- Department of Chemistry and
Biochemistry, University of California, Santa Barbara, California 93106, United States
| | - Jordan R. Yirak
- Department of Chemistry and
Biochemistry, University of California, Santa Barbara, California 93106, United States
| | - Bruce H. Lipshutz
- Department of Chemistry and
Biochemistry, University of California, Santa Barbara, California 93106, United States
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11
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Xie X, Zhang J, Song XQ, Li W, Cao F, Zhou C, Zhu H, Li L. Unveiling Pre-Transmetalation Intermediates in Base-Free Suzuki-Miyaura Cross-Couplings: A Computational Study. Inorg Chem 2024; 63:2606-2615. [PMID: 38267390 DOI: 10.1021/acs.inorgchem.3c03855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
The pre-transmetalation intermediates are critically important in Suzuki-Miyaura cross-coupling (SMC) reactions and have become a hot spot of the current research. However, the pre-transmetalation intermediates under base-free conditions have not been clear. Herein, a comprehensive theoretical study is performed on the base-free Pd-catalyzed desulfonative SMC reaction. The fragile coordination feature and the acceleration role of the RuPhos chelate ligand are revealed. The hydrogen-bond complex between the Pd-F complex and aryl boronic acid is identified as an important pre-transmetalation intermediate, which increases the energy span to 32.5 kcal/mol. The controlling factor for the formation of the hydrogen-bond complexes is attributed to the electronegativities of halogen atoms in the metal halide complexes. What is more, other reported SMC reaction systems involving metal halide complexes and aryl boronic acids are reconsidered and suggest that the hydrogen-bond complexes widely exist as stable pre-transmetalation intermediates with influencing the catalytic activities. The earth-abundant Ni-catalyzed desulfonative SMC reaction is further designed and predicted to have a higher activity than the original Pd-catalyzed SMC reaction.
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Affiliation(s)
- Xiaofeng Xie
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Jiejing Zhang
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Xue-Qing Song
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Wan Li
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Fei Cao
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Chengyan Zhou
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
| | - Huajie Zhu
- School of Chemical and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei 050018, P. R. China
| | - Longfei Li
- College of Pharmacy, Key Laboratory of Pharmaceutical Quality Control of Hebei Province, Key Laboratory of Medicinal Chemistry and Molecular Diagnosis of Ministry of Education, Hebei University, Baoding, Hebei 071002, P. R. China
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12
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Cai X, Ding D, Zhao S, Wen S, Zhang G, Bai P, Zhang W, Song H, Xu C. Zwitterionic Aqua Palladacycles with Noncovalent Interactions for meta-Selective Suzuki Coupling of 3,4-Dichlorophenol and 3,4-Dichlorobenzyl Alcohol in Water. Inorg Chem 2024; 63:2313-2321. [PMID: 38112695 DOI: 10.1021/acs.inorgchem.3c03197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
The site-selective reaction of substrates with multiple reactive sites has been a focus of the current synthetic chemistry. The use of attractive noncovalent interactions between the catalyst and substrate is emerging as a versatile approach to address site-selectivity challenges. Herein, we designed and synthesized a series of palladacycles, to control meta-selective Suzuki coupling of 3,4-dichlorophenol and 3,4-dichlorobenzyl alcohol. Noncovalent interactions directed zwitterionic aqua palladacycles catalyzed meta-selective Suzuki couplings of 3,4-dichloroarenes bearing hydroxyl in water have been developed. Experiments and density functional theory (DFT) calculations demonstrated that the electrostatic interactions play a critical role in meta-selective coupling of 3,4-dichlorophenol, while meta-selective coupling of 3,4-dichlorobenzyl alcohol arises due to the hydrogen-bonding interactions.
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Affiliation(s)
- Xingwei Cai
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Danli Ding
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Shangxun Zhao
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Shuo Wen
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Guihong Zhang
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Pengtao Bai
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Wenjing Zhang
- Green Catalysis Center, and College of Chemistry, Zhengzhou University, Zhengzhou 450001 Henan, China
| | - Heng Song
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
| | - Chen Xu
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology. Zhenjiang 212003 Jiangsu, China
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13
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Kaymaz SV, Nobar HM, Sarıgül H, Soylukan C, Akyüz L, Yüce M. Nanomaterial surface modification toolkit: Principles, components, recipes, and applications. Adv Colloid Interface Sci 2023; 322:103035. [PMID: 37931382 DOI: 10.1016/j.cis.2023.103035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 09/11/2023] [Accepted: 10/26/2023] [Indexed: 11/08/2023]
Abstract
Surface-functionalized nanostructures are at the forefront of biotechnology, providing new opportunities for biosensors, drug delivery, therapy, and bioimaging applications. The modification of nanostructures significantly impacts the performance and success of various applications by enabling selective and precise targeting. This review elucidates widely practiced surface modification strategies, including click chemistry, cross-coupling, silanization, aldehyde linkers, active ester chemistry, maleimide chemistry, epoxy linkers, and other protein and DNA-based methodologies. We also delve into the application-focused landscape of the nano-bio interface, emphasizing four key domains: therapeutics, biosensing, environmental monitoring, and point-of-care technologies, by highlighting prominent studies. The insights presented herein pave the way for further innovations at the intersection of nanotechnology and biotechnology, providing a useful handbook for beginners and professionals. The review draws on various sources, including the latest research articles (2018-2023), to provide a comprehensive overview of the field.
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Affiliation(s)
- Sümeyra Vural Kaymaz
- Faculty of Engineering and Natural Sciences, Sabanci University, Istanbul 34956, Turkey; SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Turkey
| | | | - Hasan Sarıgül
- SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Turkey
| | - Caner Soylukan
- SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Turkey
| | - Lalehan Akyüz
- Department of Molecular Biology and Genetics, Aksaray University, 68100 Aksaray, Turkey
| | - Meral Yüce
- SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Turkey.
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14
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Goswami N, Naithani S, Mangalam J, Goswami T, Dubey R, Kumar P, Kumar P, Kumar S. Fluorescent and chromogenic organic probes to detect group 10 metal ions: design strategies and sensing applications. Dalton Trans 2023; 52:14704-14732. [PMID: 37750386 DOI: 10.1039/d3dt01723k] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
Abstract
Group 10 metals including Ni, Pd and Pt have been extensively applied in various essential aspects of human social life, material science, industrial manufactures, medicines and biology. The ionic forms of these metals are involved in several biologically important processes due to their strong binding capability towards different biomolecules. However, the mishandling or overuse of such metals has been linked to serious contamination of our ecological system, more specifically in soil and water bodies with acute consequences. Therefore, the detection of group 10 metal ions in biological as well as environmental samples is of huge significance from the human health point of view. Related to this, considerable efforts are underway to develop adequately efficient and facile methods to achieve their selective detection. Optical sensing of metal ions has gained increasing attention of researchers, particularly in the environmental and biological settings. Innovatively designed optical probes (fluorescent or colorimetric) are usually comprised of three basic components: an explicitly tailored receptor unit, a signalling unit and a clearly defined reporter unit. This review deals with the recent progress in the design and fabrication of fluorescent or colorimetric organic sensors for the detection of group 10 metal ions (Ni(II), Pd(II) and Pt(II)), with attention to the general aspects for design of such sensors.
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Affiliation(s)
- Nidhi Goswami
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
| | - Sudhanshu Naithani
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
| | - Jimmy Mangalam
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
| | - Tapas Goswami
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
| | - Ritesh Dubey
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
| | - Pramod Kumar
- Department of Chemistry, Mahamana Malviya College Khekra (Baghpat), C.C.S. University Meerut, India
| | - Pankaj Kumar
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
| | - Sushil Kumar
- Department of Chemistry, Applied Science Cluster, School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun-248007, Uttarakhand, India.
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15
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Zhang P, Newhouse TR. Palladium-Catalyzed Carbonylative Difunctionalization of Unactivated Alkenes Initiated by Unstabilized Enolates. Angew Chem Int Ed Engl 2023; 62:e202307455. [PMID: 37319375 PMCID: PMC11090370 DOI: 10.1002/anie.202307455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 06/13/2023] [Accepted: 06/14/2023] [Indexed: 06/17/2023]
Abstract
This report describes the first example of palladium-catalyzed carbonylative difunctionalization of unactivated alkenes initiated by enolate nucleophiles. The approach involves initiation by an unstabilized enolate nucleophile under an atmospheric pressure of CO and termination with a carbon electrophile. This process is compatible with a diverse range of electrophiles, including aryl, heteroaryl, and vinyl iodides to yield synthetically useful 1,5-diketone products, which were demonstrated to be precursors for multi-substituted pyridines. A PdI -dimer complex with two bridging CO units was observed although its role in catalysis is not yet understood.
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Affiliation(s)
- Pengpeng Zhang
- Department of Chemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06511
| | - Timothy R. Newhouse
- Department of Chemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06511
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16
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Kumar Someswara Ashwathappa P, Higashi T, Desrosiers V, Omaña AA, Fontaine FG. Metal-Free Directed Site-Selective Csp 3 -H Borylation of Saturated Cyclic Amines. Angew Chem Int Ed Engl 2023; 62:e202309295. [PMID: 37535392 DOI: 10.1002/anie.202309295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/01/2023] [Accepted: 08/02/2023] [Indexed: 08/04/2023]
Abstract
The borylation of Csp3 -H bonds is a challenging transformation that is typically restricted to transition metal catalysis. Herein, we report the site-selective metal-free Csp3 -H borylation of saturated cyclic amines. It is possible to selectively borylate piperidine derivatives at the α or β positions according to the reaction conditions. The mechanism was supported by NMR spectroscopy, calorimetry experiments and density functional theory (DFT) computations. It suggests that the piperidine is dehydrogenated by complexation with BBr3 to produce an enamine intermediate, which is in turn borylated at either the α or β position according to the reaction conditions.
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Affiliation(s)
| | - Takuya Higashi
- Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Bunkyo-Ku, Tokyo 113-8656, Japan
| | - Vincent Desrosiers
- Département de Chimie, Université Laval, 1045 Avenue de la Médecine, Québec, Québec G1 V 0 A6, Canada
| | - Alvaro A Omaña
- Département de Chimie, Université Laval, 1045 Avenue de la Médecine, Québec, Québec G1 V 0 A6, Canada
| | - Frédéric-Georges Fontaine
- Département de Chimie, Université Laval, 1045 Avenue de la Médecine, Québec, Québec G1 V 0 A6, Canada
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17
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Lee MY, Liao CH, Hung HY, Lee JY, Lee HM. Nitron-derivative-based palladium carbene complexes: structural characterization, theoretical calculations, and catalytic applications in the Mizoroki-Heck coupling reaction. RSC Adv 2023; 13:27434-27445. [PMID: 37711375 PMCID: PMC10498360 DOI: 10.1039/d3ra05016e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 08/29/2023] [Indexed: 09/16/2023] Open
Abstract
New palladium(0) and palladium(ii) complexes with N-heterocyclic carbene (NHC) ligands derived from nitron and its derivatives were synthesized. The structures of most of these complexes were established by single-crystal X-ray diffraction studies. Among the new complexes, the palladium complex with a monodentate NHC ligand derived from nitron demonstrated the highest efficacy as a catalyst precursor in the Mizoroki-Heck coupling reaction of aryl chlorides with alkenes. Theoretical calculations provide valuable insights into the electronic parameters of both the ligands and the palladium complexes, highlighting the significance of a robust Pd-C bond and the π-accepting property of the NHC ligand in achieving enhanced catalytic activity. Notably, catalyst activation occurred much more rapidly with the preformed palladium(0) complex compared to its palladium(ii) counterpart.
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Affiliation(s)
- Ming-Yi Lee
- Department of Chemistry, National Changhua University of Education Changhua 500 Taiwan
| | - Chih-Hsiang Liao
- Department of Chemistry, National Changhua University of Education Changhua 500 Taiwan
| | - Hsiu-Yu Hung
- Department of Chemistry, National Changhua University of Education Changhua 500 Taiwan
| | - Jhen-Yi Lee
- Department of Chemistry, National Changhua University of Education Changhua 500 Taiwan
| | - Hon Man Lee
- Department of Chemistry, National Changhua University of Education Changhua 500 Taiwan
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18
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Wei J, Gandon V, Zhu Y. Amino Acid-Derived Ionic Chiral Catalysts Enable Desymmetrizing Cross-Coupling to Remote Acyclic Quaternary Stereocenters. J Am Chem Soc 2023; 145:16796-16811. [PMID: 37471696 PMCID: PMC10401725 DOI: 10.1021/jacs.3c04877] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/22/2023]
Abstract
Synthetic application of asymmetric catalysis relies on strategic alignment of bond construction to creation of chirality of a target molecule. Remote desymmetrization offers distinctive advantages of spatial decoupling of catalytic transformation and generation of a stereogenic element. However, such spatial separation presents substantial difficulties for the chiral catalyst to discriminate distant enantiotopic sites through a reaction three or more bonds away from a prochirality center. Here, we report a strategy that establishes acyclic quaternary carbon stereocenters through cross-coupling reactions at distal positions of aryl substituents. The new class of amino acid-derived ionic chiral catalysts enables desymmetrizing (enantiotopic-group-selective) Suzuki-Miyaura reaction, Sonogashira reaction, and Buchwald-Hartwig amination between diverse diarylmethane scaffolds and aryl, alkynyl, and amino coupling partners, providing rapid access to enantioenriched molecules that project substituents to widely spaced positions in the three-dimensional space. Experimental and computational investigations reveal electrostatic steering of substrates by the C-terminus of chiral ligands through ionic interactions. Cooperative ion-dipole interactions between the catalyst's amide group and potassium cation aid in the preorganization that transmits asymmetry to the product. This study demonstrates that it is practical to achieve precise long-range stereocontrol through engineering the spatial arrangements of the ionic catalysts' substrate-recognizing groups and metal centers.
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Affiliation(s)
- Junqiang Wei
- Department of Chemistry, Faculty of Science, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Vincent Gandon
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (UMR CNRS 8182), Paris-Saclay University, bâtiment Hesnri Moissan, 17 avenue des sciences, 91400 Orsay, France
| | - Ye Zhu
- Department of Chemistry, Faculty of Science, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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19
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Yang S, Yu X, Liu Y, Tomasini M, Caporaso L, Poater A, Cavallo L, Cazin CSJ, Nolan SP, Szostak M. Suzuki-Miyaura Cross-Coupling of Amides by N-C Cleavage Mediated by Air-Stable, Well-Defined [Pd(NHC)(sulfide)Cl2] Catalysts: Reaction Development, Scope, and Mechanism. J Org Chem 2023. [PMID: 37467445 DOI: 10.1021/acs.joc.3c00912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2023]
Abstract
The Suzuki-Miyaura cross-coupling of amides by selective N-C acyl bond cleavage represents a powerful tool for constructing biaryl ketones from historically inert amide bonds. These amide bond activation reactions hinge upon efficient oxidative addition of the N-C acyl bond to Pd(0). However, in contrast to the well-researched activation of aryl halides by C(sp2)-X oxidative addition, very few studies on the mechanism of C(acyl)-N bond oxidative addition and catalyst effect have been reported. Herein, we report a study on [Pd(NHC)(sulfide)Cl2] catalysts in amide N-C bond activation. These readily prepared, well-defined, air- and moisture-stable Pd(II)-NHC catalysts feature SMe2 (DMS = dimethylsulfide) or S(CH2CH2)2 (THT = tetrahydrothiophene) as ancillary ligands. The reaction development, kinetic studies, and reaction scope are presented. Extensive DFT studies were conducted to gain insight into the mechanism of C(acyl)-N bond oxidative addition and catalyst activation. We expect that [Pd(NHC)(sulfide)Cl2] precatalysts featuring sulfides as well-defined, readily accessible ancillary ligands will find application in C(acyl)-X bond activation in organic synthesis and catalysis.
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Affiliation(s)
- Shiyi Yang
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Xiang Yu
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Yaxu Liu
- Department of Chemistry and Center for Sustainable Chemistry, Ghent University, Krijgslaan 281, S-3, B-9000 Ghent, Belgium
| | - Michele Tomasini
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Maria Aurèlia Capmany 69, Campus Montilivi, Girona, Catalonia 17003, Spain
- Department of Chemistry, University of Salerno, Via Ponte don Melillo, Fisciano, 84084 SA, Italy
| | - Lucia Caporaso
- Department of Chemistry, University of Salerno, Via Ponte don Melillo, Fisciano, 84084 SA, Italy
| | - Albert Poater
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, c/Maria Aurèlia Capmany 69, Campus Montilivi, Girona, Catalonia 17003, Spain
| | - Luigi Cavallo
- Department of Chemistry, University of Salerno, Via Ponte don Melillo, Fisciano, 84084 SA, Italy
- KAUST Catalysis Center (KCC), King Abdullah University of Science & Technology, 23955-6900 Thuwal, Saudi Arabia
| | - Catherine S J Cazin
- Department of Chemistry and Center for Sustainable Chemistry, Ghent University, Krijgslaan 281, S-3, B-9000 Ghent, Belgium
| | - Steven P Nolan
- Department of Chemistry and Center for Sustainable Chemistry, Ghent University, Krijgslaan 281, S-3, B-9000 Ghent, Belgium
| | - Michal Szostak
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
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20
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Marigo N, Morgenstern B, Biffis A, Munz D. (CAAC)Pd(py) Catalysts Disproportionate to Pd(CAAC) 2. Organometallics 2023; 42:1567-1572. [PMID: 37448536 PMCID: PMC10337258 DOI: 10.1021/acs.organomet.3c00150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Indexed: 07/15/2023]
Abstract
Palladium complexes with one N-heterocyclic carbene (NHC) and a pyridine ancillary ligand are powerful cross-coupling precatalysts. Herein, we report such complexes with a cyclic (alkyl)(amino)carbene (CAAC) ligand replacing the NHC. We find that the alleged reduced form, (CAAC)Pd(py), disproportionates to the (CAAC)2Pd0 complex and palladium nanoparticles. This notwithstanding, they are potent catalysts in the Buchwald-Hartwig amination with aryl chlorides under mild conditions (60 °C). In the presence of dioxygen, these complexes catalyze the formation of diazenes from anilines. The catalytic activities of the NHC- and CAAC-supported palladium(0) and palladium(II) complexes are similar in the cross-coupling reaction, yet the CAAC complexes are superior for diazene formation.
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Affiliation(s)
- Nicola Marigo
- Coordination Chemistry, Saarland University, Campus C4.1, Saarbrücken D-66123, Germany
- Department of Chemical Sciences, University of Padova, Via Marzolo 1, Padova I-35131, Italy
| | - Bernd Morgenstern
- Coordination Chemistry, Saarland University, Campus C4.1, Saarbrücken D-66123, Germany
| | - Andrea Biffis
- Department of Chemical Sciences, University of Padova, Via Marzolo 1, Padova I-35131, Italy
| | - Dominik Munz
- Coordination Chemistry, Saarland University, Campus C4.1, Saarbrücken D-66123, Germany
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21
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Karl TM, Bouayad-Gervais S, Hueffel JA, Sperger T, Wellig S, Kaldas SJ, Dabranskaya U, Ward JS, Rissanen K, Tizzard GJ, Schoenebeck F. Machine Learning-Guided Development of Trialkylphosphine Ni (I) Dimers and Applications in Site-Selective Catalysis. J Am Chem Soc 2023. [PMID: 37411044 DOI: 10.1021/jacs.3c03403] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/08/2023]
Abstract
Owing to the unknown correlation of a metal's ligand and its resulting preferred speciation in terms of oxidation state, geometry, and nuclearity, a rational design of multinuclear catalysts remains challenging. With the goal to accelerate the identification of suitable ligands that form trialkylphosphine-derived dihalogen-bridged Ni(I) dimers, we herein employed an assumption-based machine learning approach. The workflow offers guidance in ligand space for a desired speciation without (or only minimal) prior experimental data points. We experimentally verified the predictions and synthesized numerous novel Ni(I) dimers as well as explored their potential in catalysis. We demonstrate C-I selective arylations of polyhalogenated arenes bearing competing C-Br and C-Cl sites in under 5 min at room temperature using 0.2 mol % of the newly developed dimer, [Ni(I)(μ-Br)PAd2(n-Bu)]2, which is so far unmet with alternative dinuclear or mononuclear Ni or Pd catalysts.
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Affiliation(s)
- Teresa M Karl
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Samir Bouayad-Gervais
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Julian A Hueffel
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Theresa Sperger
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Sebastian Wellig
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Sherif J Kaldas
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | | | - Jas S Ward
- Department of Chemistry, University of Jyvaskyla, FIN40014 Jyväskylä, Finland
| | - Kari Rissanen
- Department of Chemistry, University of Jyvaskyla, FIN40014 Jyväskylä, Finland
| | - Graham J Tizzard
- UK National Crystallography Service, School of Chemistry, University of Southampton, SO17 1BJ Southhampton, U.K
| | - Franziska Schoenebeck
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
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22
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Borowski JE, Newman-Stonebraker SH, Doyle AG. Comparison of Monophosphine and Bisphosphine Precatalysts for Ni-Catalyzed Suzuki-Miyaura Cross-Coupling: Understanding the Role of the Ligation State in Catalysis. ACS Catal 2023; 13:7966-7977. [PMID: 38037565 PMCID: PMC10688240 DOI: 10.1021/acscatal.3c01331] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2023]
Abstract
Practical advances in Ni-catalyzed Suzuki-Miyaura cross-coupling (SMC) have been limited by a lack of mechanistic understanding of phosphine ligand effects. While bisphosphines are commonly used in these methodologies, we have observed instances where monophosphines can provide comparable or higher levels of reactivity. Seeking to understand the role of ligation state in catalysis, we performed a head-to-head comparison study of C(sp2)-C(sp2) Ni SMCs catalyzed by mono and bisphosphine precatalysts using six distinct substrate pairings. Significant variation in optimal precatalyst was observed, with the monophosphine precatalyst tending to outperform the bisphosphines with electronically deactivated and sterically hindered substrates. Mechanistic experiments revealed a role for monoligated (P1Ni) species in accelerating the fundamental organometallic steps of the catalytic cycle, while highlighting the need for bisligated (P2Ni) species to avoid off-cycle reactivity and catalyst poisoning by heterocyclic motifs. These findings provide guidelines for ligand selection against challenging substrates and future ligand design tailored to the mechanistic demands of Ni-catalyzed SMCs.
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Affiliation(s)
| | - Samuel H. Newman-Stonebraker
- Department of Chemistry, Princeton University, Princeton, NJ 08544
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095
| | - Abigail G. Doyle
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095
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23
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Sanosa N, Ruiz-Campos P, Ambrosi D, Sampedro D, Funes-Ardoiz I. Investigating the Mechanism of Ni-Catalyzed Coupling of Photoredox-Generated Alkyl Radicals and Aryl Bromides: A Computational Study. Int J Mol Sci 2023; 24:ijms24119145. [PMID: 37298098 DOI: 10.3390/ijms24119145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 05/18/2023] [Accepted: 05/20/2023] [Indexed: 06/12/2023] Open
Abstract
Photoredox catalysis has emerged as an alternative to classical cross-coupling reactions, promoting new reactivities. Recently, the use of widely abundant alcohols and aryl bromides as coupling reagents was demonstrated to promote efficient coupling through the Ir/Ni dual photoredox catalytic cycle. However, the mechanism underlying this transformation is still unexplored, and here we report a comprehensive computational study of the catalytic cycle. We have shown that nickel catalysts can promote this reactivity very efficiently through DFT calculations. Two different mechanistic scenarios were explored, suggesting that two catalytic cycles operate simultaneously depending on the concentration of the alkyl radical.
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Affiliation(s)
- Nil Sanosa
- Centro de Investigación en Síntesis Química (CISQ), Department of Chemistry, Universidad de la Rioja, Madre de Dios 53, 26004 Logroño, Spain
| | - Pedro Ruiz-Campos
- Centro de Investigación en Síntesis Química (CISQ), Department of Chemistry, Universidad de la Rioja, Madre de Dios 53, 26004 Logroño, Spain
| | - Diego Ambrosi
- Centro de Investigación en Síntesis Química (CISQ), Department of Chemistry, Universidad de la Rioja, Madre de Dios 53, 26004 Logroño, Spain
| | - Diego Sampedro
- Centro de Investigación en Síntesis Química (CISQ), Department of Chemistry, Universidad de la Rioja, Madre de Dios 53, 26004 Logroño, Spain
| | - Ignacio Funes-Ardoiz
- Centro de Investigación en Síntesis Química (CISQ), Department of Chemistry, Universidad de la Rioja, Madre de Dios 53, 26004 Logroño, Spain
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24
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Najera D, Espinosa Martinez G, Fout AR. Synthesis and Characterization of Palladium Pincer Bis(carbene) CCC Complexes. Organometallics 2023; 42:832-837. [PMID: 38357387 PMCID: PMC10863395 DOI: 10.1021/acs.organomet.3c00114] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Indexed: 02/16/2024]
Abstract
The metalation of the DIPPCCC (DIPPCCC = bis(diisopropylphenyl-imidazol-2-ylidene)phenyl) ligand platform with Pd was achieved under mild conditions by reacting [H3(DIPPCCC)]Cl2 with Pd(OAc)2 at room temperature in the presence of 3.1 equiv of LiN(SiMe3)2. The resulting complexes (DIPPCCC)PdX (X = Cl or Br) were oxidized by two-electron oxidants PhICl2, Br2, and BTMABr3. All the complexes were crystallographically characterized, and analysis of structural parameters around the ligand scaffold show no evidence of a ligand-centered radical, rendering the metal center in the oxidized species, (DIPPCCC)PdX3 (X = Cl or Br), a formal PdIV oxidation state. Unlike their NiIV analogues, these PdIV complexes are stable to air and moisture. The addition of styrene to (DIPPCCC)PdBr3 resulted in the clean reduction of PdIV to PdII, along with the formation of the halogenated alkane. The oxidation to PdIV and subsequent return to PdII upon reduction, as opposed to formation of PdIII species, showcases the accessibility of high-valent palladium DIPPCCC complexes.
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Affiliation(s)
- Daniel
C. Najera
- School
of Chemical Sciences, University of Illinois
at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Gabriel Espinosa Martinez
- School
of Chemical Sciences, University of Illinois
at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Alison R. Fout
- Department
of Chemistry, Texas A&M University, College Station, Texas 77843, United States
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25
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Hedouin G, Ogulu D, Kaur G, Handa S. Aqueous micellar technology: an alternative beyond organic solvents. Chem Commun (Camb) 2023; 59:2842-2853. [PMID: 36753294 DOI: 10.1039/d3cc00127j] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Solvents are the major source of chemical waste from synthetic chemistry labs. Growing attention to more environmentally friendly sustainable processes demands novel technologies to substitute toxic or hazardous solvents. If not always, sometimes, water can be a suitable substitute for organic solvents, if used appropriately. However, the sole use of water as a solvent remains non-practical due to its incompatibility with organic reagents. Nonetheless, over the past few years, new additives have been disclosed to achieve chemistry in water that also include aqueous micelles as nanoreactors. Although one cannot claim micellar catalysis to be a greener technology for every single transformation, it remains the sustainable or greener alternative for many reactions. Literature precedents support that micellar technology has much more potential than just as a reaction medium, i.e., the role of the amphiphile as a ligand obviating phosphine ligands in catalysis, the shielding effect of micelles to protect water-sensitive reaction intermediates in catalysis, and the compartmentalization effect. While compiling the powerful impact of micellar catalysis, this article highlights two diverse recent technologies: (i) the design and employment of the surfactant PS-750-M in selective catalysis; (ii) the use of the semisynthetic HPMC polymer to enable ultrafast reactions in water.
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Affiliation(s)
- Gaspard Hedouin
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, USA.
| | - Deborah Ogulu
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, USA.
| | - Gaganpreet Kaur
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, USA.
| | - Sachin Handa
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, USA.
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26
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Rama RJ, Maya C, Molina F, Nova A, Nicasio MC. Important Role of NH-Carbazole in Aryl Amination Reactions Catalyzed by 2-Aminobiphenyl Palladacycles. ACS Catal 2023; 13:3934-3948. [PMID: 36970467 PMCID: PMC10029719 DOI: 10.1021/acscatal.3c00075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 02/25/2023] [Indexed: 03/09/2023]
Abstract
2-Aminobiphenyl palladacycles are among the most successful precatalysts for Pd-catalyzed cross-coupling reactions, including aryl amination. However, the role of NH-carbazole, a byproduct of precatalyst activation, remains poorly understood. Herein, the mechanism of the aryl amination reactions catalyzed by a cationic 2-aminobiphenyl palladacycle supported by a terphenyl phosphine ligand, PCyp2ArXyl2 (Cyp = cyclopentyl; ArXyl2 = 2,6-bis(2,6-dimethylphenyl)phenyl), P1, has been thoroughly investigated. Combining computational and experimental studies, we found that the Pd(II) oxidative addition intermediate reacts with NH-carbazole in the presence of the base (NaO t Bu) to yield a stable aryl carbazolyl Pd(II) complex. This species functions as the catalyst resting state, providing the amount of monoligated LPd(0) species required for catalysis and minimizing Pd decomposition. In the case of a reaction with aniline, an equilibrium between the carbazolyl complex and the on-cycle anilido analogue is established, which allows for a fast reaction at room temperature. In contrast, heating is required in a reaction with alkylamines, whose deprotonation involves coordination to the Pd center. A microkinetic model was built combining computational and experimental data to validate the mechanistic proposals. In conclusion, our study shows that despite the rate reduction observed in some reactions by the formation of the aryl carbazolyl Pd(II) complex, this species reduces catalyst decomposition and could be considered an alternative precatalyst in cross-coupling reactions.
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Affiliation(s)
- Raquel J. Rama
- Departamento de Química Inorgánica, Universidad de Sevilla, Aptdo 1203, 41071 Sevilla, Spain
- Department of Chemistry, Hylleraas Centre for Quantum Molecular Sciences and Centre for Materials Science and Nanotechnology, University of Oslo, N-0315 Oslo, Norway
| | - Celia Maya
- Instituto de Investigaciones Químicas (IIQ), Departamento de Química Inorgánica and Centro de Innovación en Química Avanzada (ORFEO-CINQA), Consejo Superior de Investigaciones Científicas (CSIC) and Universidad de Sevilla, Avenida Américo Vespucio 49, 41092 Sevilla, Spain
| | - Francisco Molina
- Laboratorio de Catálisis Homogénea, Unidad Asociada al CSIC, CIQSO-Centro de Investigación en Química Sostenible and Departamento de Química, Universidad de Huelva, 21071 Huelva, Spain
| | - Ainara Nova
- Department of Chemistry, Hylleraas Centre for Quantum Molecular Sciences and Centre for Materials Science and Nanotechnology, University of Oslo, N-0315 Oslo, Norway
| | - M. Carmen Nicasio
- Departamento de Química Inorgánica, Universidad de Sevilla, Aptdo 1203, 41071 Sevilla, Spain
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27
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Roh B, Farah AO, Kim B, Feoktistova T, Moeller F, Kim KD, Cheong PHY, Lee HG. Stereospecific Acylative Suzuki–Miyaura Cross-Coupling: General Access to Optically Active α-Aryl Carbonyl Compounds. J Am Chem Soc 2023; 145:7075-7083. [PMID: 37016901 DOI: 10.1021/jacs.3c00637] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
A novel strategy for the stereospecific Pd-catalyzed acylative cross-coupling of enantiomerically enriched alkylboron compounds has been developed. The protocol features an extremely high level of enantiospecificity to allow facile access to synthetically challenging and valuable chiral ketones and carboxylic acid derivatives. The use of a sterically encumbered and electron-rich phosphine ligand proved to be crucial for the success of the reaction. Furthermore, on the basis of experimental and computational studies, a unique mechanism for the transmetalation, assisted by the noncovalent interactions of the C(sp3)-based organoboron reagent, has been identified.
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Affiliation(s)
- Byeongdo Roh
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Abdikani Omar Farah
- Department of Chemistry, Oregon State University, 153 Gilbert Hall, Corvallis, Oregon 97331-2145, United States
| | - Beomsu Kim
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Taisiia Feoktistova
- Department of Chemistry, Oregon State University, 153 Gilbert Hall, Corvallis, Oregon 97331-2145, United States
| | - Finn Moeller
- Department of Chemistry, Johannes Gutenberg University Mainz, 55128 Mainz, Germany
| | - Kyeong Do Kim
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Paul Ha-Yeon Cheong
- Department of Chemistry, Oregon State University, 153 Gilbert Hall, Corvallis, Oregon 97331-2145, United States
| | - Hong Geun Lee
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
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28
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Sahharova LT, Burykina JV, Kostyukovich AY, Eremin DB, Boiko DA, Fakhrutdinov AN, Ananikov VP. Expanding the Role of Dimeric Species: On-Cycle Involvement, Improved Stability, and Control of Stereo-Specificity. A Case Study of Atom-Economic Catalytic Hydrothiolation. ACS Catal 2023. [DOI: 10.1021/acscatal.2c06406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/03/2023]
Affiliation(s)
- Liliya T. Sahharova
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
| | - Julia V. Burykina
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
| | - Alexander Yu. Kostyukovich
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
| | - Dmitry B. Eremin
- The Bridge@USC, University of Southern California, 1002 Childs Way, Los Angeles, California 90089-3502, United States
| | - Daniil A. Boiko
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
| | - Artem N. Fakhrutdinov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
| | - Valentine P. Ananikov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow 119991, Russia
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29
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Kincaid JA, Wong MJ, Akporji N, Gallou F, Fialho DM, Lipshutz BH. Introducing Savie: A Biodegradable Surfactant Enabling Chemo- and Biocatalysis and Related Reactions in Recyclable Water. J Am Chem Soc 2023; 145:4266-4278. [PMID: 36753354 PMCID: PMC9951251 DOI: 10.1021/jacs.2c13444] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Indexed: 02/09/2023]
Abstract
Savie is a biodegradable surfactant derived from vitamin E and polysarcosine (PSar) developed for use in organic synthesis in recyclable water. This includes homogeneous catalysis (including examples employing only ppm levels of catalyst), heterogeneous catalysis, and biocatalytic transformations, including a multistep chemoenzymatic sequence. Use of Savie frequently leads to significantly higher yields than do conventional surfactants, while obviating the need for waste-generating organic solvents.
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Affiliation(s)
- Joseph
R. A. Kincaid
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
| | - Madison J. Wong
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
| | - Nnamdi Akporji
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
| | | | - David M. Fialho
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
| | - Bruce H. Lipshutz
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
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30
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Khromova OV, Emelyanov MA, Stoletova NV, Bodunova EE, Prima DO, Smol’yakov AF, Eremenko IL, Maleev VI, Larionov VA. Post-Modification of Octahedral Chiral-at-Metal Cobalt(III) Complexes by Suzuki–Miyaura Cross-Coupling and Evaluation of Their Catalytic Activity. Organometallics 2023. [DOI: 10.1021/acs.organomet.2c00590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Olga V. Khromova
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
| | - Mikhail A. Emelyanov
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
| | - Nadezhda V. Stoletova
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
| | - Ekaterina E. Bodunova
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
- Higher Chemical College of the Russian Academy of Sciences, Miusskaya sq. 9, 125047 Moscow, Russian Federation
| | - Darya O. Prima
- Zelinsky Institute of Organic Chemistry of Russian Academy of Sciences, Leninsky prosp. 47, 119991 Moscow, Russian Federation
| | - Alexander F. Smol’yakov
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
| | - Igor L. Eremenko
- N. S. Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, Leninsky prosp. 31, 119991 Moscow, Russian Federation
| | - Victor I. Maleev
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
| | - Vladimir A. Larionov
- A. N. Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences (INEOS RAS), Vavilov Str. 28, 119991 Moscow, Russian Federation
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklaya Str. 6, 117198 Moscow, Russian Federation
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31
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Ansari TN, Sharma S, Hazra S, Hicks F, Leahy DK, Handa S. Trichloromethyl Carbanion in Aqueous Micelles: Mechanistic Insights and Access to Carboxylic Acids from (Hetero)aryl Halides. ACS Catal 2022. [DOI: 10.1021/acscatal.2c05288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Tharique N. Ansari
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
| | - Sudripet Sharma
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
| | - Susanta Hazra
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
| | - Frederick Hicks
- Process Chemistry Development, Takeda Pharmaceuticals International, Cambridge, Massachusetts 02139, USA
| | - David K. Leahy
- Process Chemistry Development, Takeda Pharmaceuticals International, Cambridge, Massachusetts 02139, USA
| | - Sachin Handa
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40292, United States
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