Direct and Indirect Effects of Increased CO2 Partial Pressure on the Bioenergetics of Syntrophic Propionate and Butyrate Conversion

Mechanisms of how exogenous CO2 affects methane production in an optimized high-solid anaerobic digester treating co-substrates of sewage sludge and food waste

The CO2 addition could promote anaerobic digestion, but the exploration on bioconversion mechanisms of exogenous CO2 in high-solid anaerobic digestion (HSAD) system is still insufficient. This study investigated the performance of a CO2-added HSAD treating co-substrates of sewage sludge and food waste (FW). The maximum methane yield of 623.4 mL CH4/g-VSremoved was obtained with FW proportion of 75 %, organic loading of 3.7 g-VS/L/d and intermittent stirring. The CO2 addition could improve the methane yield by 11.8 % under the optimized conditions. Thermodynamic analysis showed that the most energetically favorable reaction for CH4 production was acetoclastic methanogenesis (AM), and the main bioconversion pathway of exogenous CO2 was homoacetogenesis (HA). Significantly higher methanogenic activity was achieved with CO2 addition during acetate decomposition testing, suggesting enhanced AM pathway. The AM methanogens Methanosaeta were also enriched. Therefore, the main mechanism of the enhanced methane production by CO2 addition was the facilitation of coupled HA-AM pathway.

Reverse electron transfer: Novel anaerobic methanogenesis pathway regulated through exogenous CO2 synergized with biochar

Acid accumulation and carbon emission are two major challenges in anaerobic digestion. Syntrophic consortia can employ reverse electron transfer (RET) to facilitate thermodynamically unfavorable redox reactions during acetogenesis. However, the potential mechanisms and regulatory methods of RET remain unclear. This study examines the regulatory mechanisms by which exogenous CO2 affects RET and demonstrates that biochar maximizes CO2 solubility at 25.8 mmol/L to enhance effects further. CO2 synergized with biochar significantly increases cumulative methane production and propionate degradation rate. From the bioenergetic perspective, CO2 decreases energy level to a maximum of -87 kJ/mol, strengthening the thermodynamic viability. The underlying mechanism can be attributed to RET promotion, as indicated by increased formate dehydrogenase and enrichment of H2/formate-producing bacteria with their partner Methanospirillum hungatei. Moreover, the 5 % 13CH4 and methane contribution result show that CO2 accomplishes directed methanogenesis. Overall, this investigation riches the roles of CO2 and biochar in AD surrounding RET.

Zero-valent iron enhanced methane production of anaerobic digestion by reinforcing microbial electron bifurcation coupled with direct inter-species electron transfer

Zero-valent iron (ZVI) can facilitate methanogens of anaerobic digestion (AD). However, the impact of ZVI on the micro-energetic strategies of AD microorganisms remains uncertain. This study aimed to elucidate the development of an energy conservation model involving direct interspecies electron transfer (DIET) and electron bifurcate (EB) by using four types of ZVI. Overall, the ZVI addition resulted in a substantial increase in methane production (1.26 to 2.18 times higher), and the effect of boron (B) doped ZVI was particularly pronounced. The underlying mechanism may be the formation of energy harvest pathway related to DIET. In detail, B-doped ZVI could enhance its interfacial binding to cytochrome c. Decreased polar solvation energy from 20.473 to 1.509 kJ/mol is beneficial for electron transfer, thereby augmenting the flavin-bounded Cytc activity and DIET process. Besides, ZVI-enhanced EB enzyme activity like HdrA2B2C2-MvhAGD could improve the EB process, which can couple with DIET for electron transfer and energy conservation. Energy analysis based on EB-coupled DIET metabolism pathways demonstrated that the ATP saved in this coupled model theoretically line in 0.25 to 0.5 mol ATP/mol substrate. Overall, this study offers valuable insights into microbial energetic strategies pertaining to the utilization of conductive materials, with the target of enhancing methane recovery efficiency from organic waste.

Material and microbial perspectives on understanding the role of biochar in mitigating ammonia inhibition during anaerobic digestion

With the increasing adoption of carbon-based strategies to enhance methanogenic processes, there is a growing concern regarding the correlation between biochar properties and its stimulating effects on anaerobic digestion (AD) under ammonia inhibition. This study delves into the relevant characteristics and potential mechanisms of biochar in the context of AD system under ammonia inhibition. The introduction of optimized biochar, distinguished by rich CO bond, abundant defect density, and high electronic capacity, resulted in a significant reduction in the lag period of anaerobic digestion system under 5.0 g/L ammonia stress, approximately by around 63 % compared to the control one. Biochar helps regulate the community structure, promotes the accumulation of acetate-consuming bacteria, in the AD system under ammonia inhibition. More examinations show that biochar promotes direct interspecies electron transfer in AD system under ammonia inhibition, as evidenced by diminished levels of bound electroactive extracellular polymeric substances, increased abundance of electroactive bacteria, and notably, the up-regulation of direct interspecies electron transfer associated genes, including the conductive pili and Cytochrome C genes, as revealed by meta-transcriptomic analysis. Additionally, gene expression related to proteins associated with ammonium detoxification were found to be up-regulated in systems supplemented with biochar. These findings provide essential evidence and insights for the selection and potential engineering of effective biochar to enhance AD performance under ammonia inhibition.

Electrical current disrupts the electron transfer in defined consortia

Improving methane production through electrical current application to anaerobic digesters has garnered interest in optimizing such microbial electrochemical technologies, with claims suggesting direct interspecies electron transfer (DIET) at the cathode enhances methane yield. However, previous studies with mixed microbial communities only reported interspecies interactions based on species co-occurrence at the cathode, lacking insight into how a poised cathode influences well-defined DIET-based partnerships. To address this, we investigated the impact of continuous and discontinuous exposure to a poised cathode (-0.7 V vs. standard hydrogen electrode) on a defined consortium of Geobacter metallireducens and Methanosarcina barkeri, known for their DIET capabilities. The physiology of DIET consortia exposed to electrical current was compared to that of unexposed consortia. In current-exposed incubations, overall metabolic activity and cell numbers for both partners declined. The consortium, receiving electrons from the poised cathode, accumulated acetate and hydrogen, with only 32% of the recovered electrons allocated to methane production. Discontinuous exposure intensified these detrimental effects. Conversely, unexposed control reactors efficiently converted ethanol to methane, transiently accumulating acetate and recovering 88% of electrons in methane. Our results demonstrate the overall detrimental effect of electrochemical stimulation on a DIET consortium. Besides, the data indicate that the presence of an alternative electron donor (cathode) hinders efficient electron retrieval by the methanogen from Geobacter, and induces catabolic repression of oxidative metabolism in Geobacter. This study emphasizes understanding specific DIET-based interactions to enhance methane production during electrical stimulation, providing insights for optimizing tailored interspecies partnerships in microbial electrochemical technologies.

The fate of sulfamethoxazole and trimethoprim in a micro-aerated anaerobic membrane bioreactor and the occurrence of antibiotic resistance in the permeate

This study investigates the effects, conversions, and resistance induction, following the addition of 150 μg·L-1 of two antibiotics, sulfamethoxazole (SMX) and trimethoprim (TMP), in a laboratory-scale micro-aerated anaerobic membrane bioreactor (MA-AnMBR). TMP and SMX were removed at 97 and 86%, indicating that micro-aeration did not hamper their removal. These antibiotics only affected the pH and biogas composition of the process, with a significant change in pH from 7.8 to 7.5, and a decrease in biogas methane content from 84 to 78%. TMP was rapidly adsorbed onto the sludge and subsequently degraded during the long solids retention time of 27 days. SMX adsorption was minimal, but the applied hydraulic retention time of 2.6 days was sufficiently long to biodegrade SMX. The levels of three antibiotic-resistant genes (ARGs) (sul1, sul2, and dfrA1) and one mobile genetic element biomarker (intI1) were analyzed by qPCR. Additions of the antibiotics increased the relative abundances of all ARGs and intI1 in the MA-AnMBR sludge, with the sul2 gene folding 15 times after 310 days of operation. The MA-AnMBR was able to reduce the concentration of antibiotic-resistant bacteria (ARB) in the permeate by 3 log.

Syntrophic Propionate Oxidation: One of the Rate-Limiting Steps of Organic Matter Decomposition in Anoxic Environments

Syntrophic propionate oxidation is one of the rate-limiting steps during anaerobic decomposition of organic matter in anoxic environments. Syntrophic propionate-oxidizing bacteria (SPOB) are members of the "rare biosphere" living at the edge of the thermodynamic limit in most natural habitats. Hitherto, only 10 bacterial species capable of syntrophic propionate oxidization have been identified. SPOB employ different metabolisms for propionate oxidation (e.g., methylmalonyl-CoA pathway and C6 dismutation pathway) and show diverse life strategies (e.g., obligately and facultatively syntrophic lifestyle). The flavin-based electron bifurcation/confurcation (FBEB/C) systems have been proposed to help solve the thermodynamic dilemma during the formation of the low-potential products H2 and formate. Molecular ecological approaches, such as DNA stable isotope probing (DNA-SIP) and metagenomics, have been used to detect SPOB in natural environments. Furthermore, the biogeographical pattern of SPOB has been recently described in paddy soils. A comprehensive understanding of SPOB is essential for better predicting and managing organic matter decomposition and carbon cycling in anoxic environments. In this review, we described the critical role of syntrophic propionate oxidation in anaerobic decomposition of organic matter, phylogenetic and metabolic diversity, life strategies and ecophysiology, composition of syntrophic partners, and pattern of biogeographic distribution of SPOB in natural environments. We ended up with a few perspectives for future research.

Steering the product spectrum in high-pressure anaerobic processes: CO2 partial pressure as a novel tool in biorefinery concepts

BACKGROUND

Elevated CO₂ partial pressure (pCO₂) has been proposed as a potential steering parameter for selective carboxylate production in mixed culture fermentation. It is anticipated that intermediate product spectrum and production rates, as well as changes in the microbial community, are (in)directly influenced by elevated pCO₂. However, it remains unclear how pCO₂ interacts with other operational conditions, namely substrate specificity, substrate-to-biomass (S/X) ratio and the presence of an additional electron donor, and what effect pCO₂ has on the exact composition of fermentation products. Here, we investigated possible steering effects of elevated pCO₂ combined with (1) mixed substrate (glycerol/glucose) provision; (2) subsequent increments in substrate concentration to increase the S/X ratio; and (3) formate as an additional electron donor.

RESULTS

Metabolite predominance, e.g., propionate vs. butyrate/acetate, and cell density, depended on interaction effects between pCO₂-S/X ratio and pCO₂-formate. Individual substrate consumption rates were negatively impacted by the interaction effect between pCO₂-S/X ratio and were not re-established after lowering the S/X ratio and adding formate. The product spectrum was influenced by the microbial community composition, which in turn, was modified by substrate type and the interaction effect between pCO₂-formate. High propionate and butyrate levels strongly correlated with Negativicutes and Clostridia predominance, respectively. After subsequent pressurized fermentation phases, the interaction effect between pCO₂-formate enabled a shift from propionate towards succinate production when mixed substrate was provided.

CONCLUSIONS

Overall, interaction effects between elevated pCO₂, substrate specificity, high S/X ratio and availability of reducing equivalents from formate, rather than an isolated pCO₂ effect, modified the proportionality of propionate, butyrate and acetate in pressurized mixed substrate fermentations at the expense of reduced consumption rates and increased lag-phases. The interaction effect between elevated pCO₂ and formate was beneficial for succinate production and biomass growth with a glycerol/glucose mixture as the substrate. The positive effect may be attributed to the availability of extra reducing equivalents, likely enhanced carbon fixating activity and hindered propionate conversion due to increased concentration of undissociated carboxylic acids.

Hydraulic retention time and pressure affect anaerobic digestion process treating synthetic glucose wastewater

High-pressure anaerobic digestion (HPAD) can directly upgrade biogas (CH₄ content to 90 %) within a reactor. Understanding of how HPAD-related microbiomes are constructed by operational parameters (hydraulic retention time (HRT) and pressure) and their interactions within the biochemical process remain underexplored. In this study, an HPAD reactor was operated at five different HRT (from 40 to 13 d), with pressure around 10-13 bar. In HPAD, pressure was the driving force behind CH₄ content. Low HRTs (13-20 d) for HPAD led to volatile fatty acids accumulation, which occurred earlier than that in normal-pressure digestion. HRT mainly affected the archaeal community, whereas pressure mostly affected the bacterial community. Hydrogenotrophic methanogen Methanobacterium prevailed at low HRTs (13-20 d). When operating continuous HPAD, attention should be paid to HRT optimization, as low HRTs (e.g., 13 d) impaired the activity of CH₄-synthesizing enzyme Methyl-coenzyme M reductase.

Pre-incubation conditions determine the fermentation pattern and microbial community structure in fermenters at mild hydrostatic pressure

Fermentation at elevated hydrostatic pressure is a novel strategy targeting product selectivity. However, the role of inoculum history and cross-resistance, that is, acquired tolerance from incubation under distinctive environmental stress, remains unclear in high-pressure operation. In our here presented work, we studied fermentation and microbial community responses of halotolerant marine sediment inoculum (MSI) and anaerobic digester inoculum (ADI), pre-incubated in serum bottles at different temperatures and subsequently exposed to mild hydrostatic pressure (MHP; < 10 MPa) in stainless steel reactors. Results showed that MHP effects on microbial growth, activity, and community structure were strongly temperature-dependent. At moderate temperature (20°C), biomass yield and fermentation were not limited by MHP; suggesting a cross-resistance effect from incubation temperature and halotolerance. Low temperatures (10°C) and MHP imposed kinetic and bioenergetic limitations, constraining growth and product formation. Fermentation remained favorable in MSI at 28°C and ADI at 37°C, despite reduced biomass yield resulting from maintenance and decay proportionally increasing with temperature. Microbial community structure was modified by temperature during the enrichment, and slight differences observed after MHP-exposure did not compromise functionality. Results showed that the relation incubation temperature-halotolerance proved to be a modifier of microbial responses to MHP and could be potentially exploited in fermentations to modulate product/biomass ratio.

Syntrophic propionate-oxidizing bacteria in methanogenic systems

The mutual nutritional cooperation underpinning syntrophic propionate degradation provides a scant amount of energy for the microorganisms involved, so propionate degradation often acts as a bottleneck in methanogenic systems. Understanding the ecology, physiology and metabolic capacities of syntrophic propionate-oxidizing bacteria (SPOB) is of interest in both engineered and natural ecosystems, as it offers prospects to guide further development of technologies for biogas production and biomass-derived chemicals, and is important in forecasting contributions by biogenic methane emissions to climate change. SPOB are distributed across different phyla. They can exhibit broad metabolic capabilities in addition to syntrophy (e.g. fermentative, sulfidogenic and acetogenic metabolism) and demonstrate variations in interplay with cooperating partners, indicating nuances in their syntrophic lifestyle. In this review, we discuss distinctions in gene repertoire and organization for the methylmalonyl-CoA pathway, hydrogenases and formate dehydrogenases, and emerging facets of (formate/hydrogen/direct) electron transfer mechanisms. We also use information from cultivations, thermodynamic calculations and omic analyses as the basis for identifying environmental conditions governing propionate oxidation in various ecosystems. Overall, this review improves basic and applied understanding of SPOB and highlights knowledge gaps, hopefully encouraging future research and engineering on propionate metabolism in biotechnological processes.

Modelling of autogenerative high-pressure anaerobic digestion in a batch reactor for the production of pressurised biogas

Background

Pressurised anaerobic digestion allows the production of biogas with a high content of methane and, at the same time, avoid the energy costs for the biogas upgrading and injection into the distribution grid. The technology carries potential, but the research faces practical constraints by a.o. the capital investment needed in high-pressure reactors and sensors and associated sampling limitations. In this work, the kinetic model of an autogenerative high-pressure anaerobic digestion of acetate, as the representative compound of the aceticlastic methanogenesis route, in batch configuration, is proposed to predict the dynamic performance of pressurised digesters and support future experimental work. The modelling of autogenerative high-pressure anaerobic digestion in batch configuration, which is not extensively studied and simulated in the present literature, was developed, calibrated, and validated by using experimental results available from the literature.

Results

Under high-pressure conditions, the assessment of the Monod maximum specific uptake rate, the half-saturation constant and the first-order decay rate was carried out, and the values of 5.9 kg COD kg COD⁻¹ d⁻¹, 0.05 kg COD m⁻³ and 0.02 d⁻¹ were determined, respectively. By using the predicted values, excellent fittings of the final pressure, the CH₄ molar fraction and the specific methanogenic yield calculation were obtained. Likewise, the variation in the gas–liquid mass transfer coefficient by several orders of magnitude showed negligible effects on the model predictive values in terms of methane molar fraction of the produced biogas, while the final pressure seemed to be slightly influenced.

Conclusions

The proposed model allowed to estimate the Monod maximum specific uptake rate for acetate, the half-saturation rate for acetate and the first-order decay rate constant, which were comparable with literature values reported for well-studied methanogens under anaerobic digestion at atmospheric pressure. The methane molar fraction and the final pressure predicted by the model showed different responses towards the variation of the gas–liquid mass transfer coefficient since the former seemed not to be affected by the variation of the gas–liquid mass transfer coefficient; in contrast, the final pressure seemed to be slightly influenced. The proposed approach may also allow to potentially identify the methanogens species able to be predominant at high pressure.

Effects of carbon cloth on anaerobic digestion of high concentration organic wastewater under various mixing conditions

Anaerobic digestion (AD) has been considered an energy efficient strategy in treating high concentration organic wastewater rich in volatile fatty acids (VFAs). Continuous stirred tank reactors (CSTRs) have been widely applied in the AD process; however, they may suffer from low efficiency with a relatively short hydraulic retention time (HRT) in wastewater treatment. In this study, carbon cloth was supplemented to investigate the effects on syntrophic degradation of VFA wastewater by increasing organic loading rates (OLRs) under various mixing conditions in CSTRs operating at an HRT of 10 days. The results demonstrated that the methane production rate could be increased by 10.1-23.0% and the chemical oxygen demand (COD) removal efficiency was enhanced up to 14.6% with carbon cloth addition in the unmixed reactor at OLRs between 2.1 and 4.2 g COD/L-d. In contrast, the enhancement effect was only observed under a high OLR of 4.2 g COD/L-d in well-mixed anaerobic digester. Cyclic voltammetry results indicated that an electroactive biofilm was formed on the surface of carbon cloth. The microbial communities revealed that the electroactive biofilms had the highest abundances of exoelectrogen Sedimentibacter and electrotrophic methanogen Methanosaeta species, which were 5.5 and 4.2 times higher than the suspension, respectively.

Oriented conversion of agricultural bio-waste to value-added products - A schematic review towards key nutrient circulation

Agriculture bio-waste is one of the largest sectors for nutrient circulation and resource recovery. This review intends to summarize the possible scheme through coupling chemical conversion of crop straws to biochar and biological conversion of livestock waste to value-added products thus reaching key nutrient circulation. Chemical conversion of crop straws to biochar was reviewed through summarizing the preparation methods and functional modification of biochar. Then, high-solid two-phase anaerobic conversion of agriculture bio-waste to value-added products and improved performance of bio-conversion through byproduct gases reuse and biochar supplementation were reviewed. Finally, high quality compost production through amendment of biochar and residual digestate was proposed with analysis of reduced nitrogen emission and carbon balance. The biological mechanism of synergistic regulation of carbon and nitrogen loss during bio-conversion with biochar was also reviewed. This will provide a model for synergistic conversion of agricultural wastes to value added products pursuing key nutrient circulation.

Two-stage integrated process for bio-methanol production coupled with methane and carbon dioxide sequestration: Kinetic modelling and experimental validation

The study demonstrates a two-stage integrated process for bio-methanol production using Methylosinus trichosporium NCIMB 11131, coupled with sequestration of methane and carbon dioxide. The first stage involved generation of methanotrophic biomass via sequestration of methane; which was used as biocatalyst to reduce carbon dioxide into methanol in the second stage. Maximum biomass titer of 3.39 g L^-1 and productivity of 0.60 g L^-1 d^-1 were achieved in semi-batch stirred tank reactor with methane concentration in the inlet gas mixture of 2.5% v/v and gas flow rate of 0.5 vvm. Methane fixation rate was estimated to be 0.32 g L^-1 d^-1. Maximum methanol titer of 0.58 g L^-1 was achieved at headspace carbon dioxide concentration of 50% v/v and liquid to headspace volume ratio 10:90. Subsequently, a kinetic model was developed to predict and understand the system behaviour in terms of dynamic profile of growth, methanol formation, concentration of dissolved methane or carbon dioxide in the aqueous phase and headspace carbon dioxide concentration, in response to varying process parameters. The model can serve as a tool for estimation of process parameters and aid in overall production optimization.

Mixed-culture biocathodes for acetate production from CO2 reduction in the microbial electrosynthesis: Impact of temperature

The temperature effect on bioelectrochemical reduction of CO₂ to acetate with a mixed-culture biocathode in the microbial electrosynthesis was explored. The results showed that maximum acetate amount of 525.84 ± 1.55 mg L^-1 and fastest acetate formation of 49.21 ± 0.49 mg L^-1 d^-1 were obtained under mesophilic conditions. Electron recovery efficiency for CO₂ reduction to acetate ranged from 14.50 ± 2.20% to 64.86 ± 2.20%, due to propionate, butyrate and H₂ generation. Mesophilic conditions were demonstrated to be more favorable for biofilm formation on the cathode, resulting in a stable and dense biofilm. At phylum level, the relative abundance of Bacteroidetes phylum in the biofilm remarkably increased under mesophilic conditions, compared with that at psychrophilic and thermophilic conditions. At genus level, the Clostridium, Treponema, Acidithiobacillus, Acetobacterium and Acetoanaerobium were found to be dominated genera in the biofilm under mesophilic conditions, while genera diversity decreased under psychrophilic and thermophilic conditions.

How can ethanol enhance direct interspecies electron transfer in anaerobic digestion?

Anaerobic digestion (AD) of organic waste to produce biogas is a mature biotechnology commercialised for decades. However, the relatively recent discovery of direct interspecies electron transfer (DIET) brings a new opportunity to improve the efficiency of biogas technology. DIET may replace mediated interspecies electron transfer (MIET) by efficient electron transfer between exoelectrogens and electrotrophic methanogens, thereby enhancing yields and rates of biogas production. Ethanol, as the initial electron donor in the discovery of the DIET pathway, is now a "hot topic" in the literature. Recent studies have indicated that ethanol in AD functions not only as the substrate, but also as the precursor to stimulate DIET by enriching exoelectrogens and electrotrophic methanogens for co-digesting complex organic wastes. This review aims to highlight the state of the art and recent advances in ethanol-based DIET in AD. The DIET associated reactions of ethanol oxidation and carbon dioxide reduction are assessed by thermodynamic analysis to reveal the extent of the potential for improvement of the AD processes that utilizes DIET pathways. Three ethanol-based DIET strategies are discussed: (1) ethanol as the sole substrate supplemented with conductive materials in AD, (2) ethanol co-digestion with complex substrates and (3) ethanol-type fermentation prior to AD. This review aims to chart the pathways for improved AD performance by utilizing ethanol-based DIET in specific treatments of biological wastes.

On-site CO2 bio-sequestration in anaerobic digestion: Current status and prospects

The advantages of anaerobic digestion (AD) technology in organic solid waste treatment for bioenergy recovery are evidenced in worldwide. Recently, more attention has been paid to on-site biogas research, as well as biogenic CO₂ sequestration from AD plant, to promote "carbon neutral". Single-phase and two-phase AD system can be incorporated with various CO₂ bioconversion technologies through H₂ mediated CO₂ bioconversion (in-situ and ex-situ biogas upgrading), or other emerging strategies for CO₂ fixation without exogenous H₂ injection; these include in-situ direct interspecies electron transfer reinforcement, electromethanogenesis, and off-gas reutilization. The existing and potential scenarios for on-site CO₂ bio-sequestration within the AD framework are reviewed from the perspectives of metabolic pathways, functional microorganisms, the limitations on reaction kinetics. This review concluded that on-site CO₂ bio-sequestration is a promising solution to reduce greenhouse gas emissions and increase renewable energy recovery.

Directional Selection of Microbial Community Reduces Propionate Accumulation in Glycerol and Glucose Anaerobic Bioconversion Under Elevated pCO2

Volatile fatty acid accumulation is a sign of digester perturbation. Previous work showed the thermodynamic limitations of hydrogen and CO₂ in syntrophic propionate oxidation under elevated partial pressure of CO₂ (pCO₂). Here we study the effect of directional selection under increasing substrate load as a strategy to restructure the microbial community and induce cross-protection mechanisms to improve glucose and glycerol conversion performance under elevated pCO₂. After an adaptive laboratory evolution (ALE) process, viable cell density increased and predominant microbial groups were modified: an increase in Methanosaeta and syntrophic propionate oxidizing bacteria (SPOB) associated with the Smithella genus was found with glycerol as the substrate. A modest increase in SPOB along with a shift in the predominance of Methanobacterium toward Methanosaeta was observed with glucose as the substrate. The evolved inoculum showed affected diversity within archaeal spp. under 5 bar initial pCO₂; however, higher CH₄ yield resulted from enhanced propionate conversion linked to the community shifts and biomass adaptation during the ALE process. Moreover, the evolved inoculum attained increased cell viability with glucose and a marginal decrease with glycerol as the substrate. Results showed differences in terms of carbon flux distribution using the evolved inoculum under elevated pCO₂: glucose conversion resulted in a higher cell density and viability, whereas glycerol conversion led to higher propionate production whose enabled conversion reflected in increased CH₄ yield. Our results highlight that limited propionate conversion at elevated pCO₂ resulted from decreased cell viability and low abundance of syntrophic partners. This limitation can be mitigated by promoting alternative and more resilient SPOB and building up biomass adaptation to environmental conditions via directional selection of microbial community.