Complex Forms of Soil Organic Phosphorus-A Major Component of Soil Phosphorus

Small molecules dominate organic phosphorus in NaOH-EDTA extracts of soils as determined by 31P NMR

Understanding the composition of organic phosphorus (P) in soils is relevant to various disciplines, from agricultural sciences to ecology. Despite past efforts, the precise nature of soil organic P remains an enigma, especially that of the orthophosphate monoesters, which dominate 31P NMR spectra of NaOH-EDTA extracts of soils worldwide. The monoester region often exhibits an unidentified, broad background believed to represent high molecular weight (MW) P. We investigated this monoester background using 1D 31P NMR and 2D 1H31P NMR, as well as 31P transverse relaxation (T2) measurements to calculate its intrinsic linewidth and relate it to MW. Analyzing seven soils from different ecosystems, we observed linewidths of 0.5 to 3 Hz for resolved monoester signals and the background, indicating that it consists of many, possibly >100, sharp signals associated with small (<1.5 kDa) organic P molecules. This result was further supported by 2D 1H31P NMR spectra revealing signals not resolved in the 1D spectra. Our findings align with 31P NMR studies detecting background signals in soil-free samples and modern evidence that alkali-soluble soil organic matter consists of self-assemblies of small organic compounds mimicking large molecules.

Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages

Phosphorus (P) limitation of ecosystem processes is widespread in terrestrial habitats. While a few auxiliary metabolic genes (AMGs) in bacteriophages from aquatic habitats are reported to have the potential to enhance P-acquisition ability of their hosts, little is known about the diversity and potential ecological function of P-acquisition genes encoded by terrestrial bacteriophages. Here, we analyze 333 soil metagenomes from five terrestrial habitat types across China and identify 75 viral operational taxonomic units (vOTUs) that encode 105 P-acquisition AMGs. These AMGs span 17 distinct functional genes involved in four primary processes of microbial P-acquisition. Among them, over 60% (11/17) have not been reported previously. We experimentally verify in-vitro enzymatic activities of two pyrophosphatases and one alkaline phosphatase encoded by P-acquisition vOTUs. Thirty-six percent of the 75 P-acquisition vOTUs are detectable in a published global topsoil metagenome dataset. Further analyses reveal that, under certain circumstances, the identified P-acquisition AMGs have a greater influence on soil P availability and are more dominant in soil metatranscriptomes than their corresponding bacterial genes. Overall, our results reinforce the necessity of incorporating viral contributions into biogeochemical P cycling.

Carbon-containing additives changes the phosphorus flow by affecting humification and bacterial community during composting

Phosphorus recycling from organic wastes to prepare a fertilizer by composting is promising. The aim of this study was to compare the effect of diverse carbon-containing additives (T1, glucose; T2, biochar; T3, woody peat) on phosphorus (P) fractions transformations, humus formation and bacterial community succession in chicken manure composting. Results showed that orthophosphate monoester was significantly related to the humification process, and glucose or woody peat addition increased the P in humus. Lentibacillus was a key carbon cycle bacteria related to organics stabilization affected by carbon-containing additives. Redundancy analysis and variation partitioning indicated that phosphatase enzyme activity driven by bacterial community and humic substance had 59.7% contribution to P fractions dynamics. The findings highlight an efficient humus-regulation P stabilization way, notably in composting adding glucose to form humus with a better binding ability to labile P forms and phosphatase.

Phosphorus transformation behavior and phosphorus cycling genes expression in food waste composting with hydroxyapatite enhanced by phosphate-solubilizing bacteria

This study aimed to explore the effect of phosphate-solubilizing bacteria (PSB) Bacillus inoculation in the cooling stage on hydroxyapatite dissolution, phosphorus (P) forms transformation, and bacterial P cycling genes in food waste composting with hydroxyapatite. Results indicated that PSB inoculation promoted the dissolution of hydroxyapatite, increased P availability of compost by 8.1% and decreased the ratio of organic P to inorganic P by 10.2% based on sequential fractionation and ³¹P nuclear magnetic resonance spectroscopy. Illumina sequencing indicated Bacillus relative abundance after inoculation increased up to one time higher than control after the cooling stage. Network analysis and metabolic function of bacterial community analysis suggested inorganic P solubilizing genes of Bacillus and organic P mineralization genes of other genera were improved after inoculation in the core module. Therefore, bioaugmentation of PSB in the cooling stage may be a potential way to improve P bioavailability of bone and food waste in composting.

Response of sediment phosphorus partitioning to lanthanum-modified clay amendment and porewater chemistry in a small eutrophic lake

Sustained eutrophication of the aquatic environment by the remobilization of legacy phosphorus (P) stored in soils and sediments is a prevailing issue worldwide. Fluxes of P from the sediments to the water column, referred to as internal P loading, often delays the recovery of water quality following a reduction in external P loads. Here, we report on the vertical distribution and geochemistry of P, lanthanum (La), iron (Fe) and carbon (C) in the culturally eutrophied Lake Bromont. This lake underwent remediation treatment using La modified bentonite (LMB) commercially available as Phoslock™. We investigated the effectiveness of LMB in decreasing soluble reactive phosphorus (SRP) availability in sediments and in reducing dissolved fluxes of P across the sediment-water interface. Sediment cores were retrieved before and after LMB treatment at three sites representing bottom sediment, sediment influenced by lakeside housing and finally littoral sediment influenced by the lake inflow. Sequential extractions were used to assess changes in P speciation. Depth profiles of dissolved porewater concentrations were obtained after LMB treatment at each site. Results indicate that SRP extracted from the sediments decreased at all sites, while total extracted P (P_TOT) bound to redox-sensitive metal oxides increased. ³¹P NMR data on P extract reveals that 20-43% of total solid-phase P is in the form of organic P (P_org) susceptible to be released via microbial degradation. Geochemical modelling of porewater data provides evidence that LaPO_4(s) mineral phases, such as rhabdophane and/or monazite, are likely forming. However, results also suggest that La³⁺ binding by dissolved organic carbon (DOC) hinders La-phosphate precipitation. We rely on thermodynamic modelling to suggest that high Fe²⁺ would bind to DOC instead of La³⁺, therefore promoting P sequestrations by LMB under anoxic conditions.

Cognizing and characterizing the organic phosphorus in lake sediments: Advances and challenges

Organic phosphorus (OP) is one of the main forms of phosphorus in lake ecosystems. Mounting evidence has shown that sediment OP has become a major but underestimated issue in addressing lake eutrophication and algal bloom. However, a holistic view of sediment OP remains missing. This review aims to provide an overview of progress on the studies of OP in lake sediments, focusing on the contribution of OP to internal P loading, its potential role in algal bloom, and the migration and transformation. In addition, this work systematically summarized current methods for characterizing OP content, chemical fraction, composition, bioavailability, and assessment of OP release in sediment, with the pros and cons of each method being discussed. In the end, this work pointed out following efforts needed to deepen the understanding of sediment OP, namely: (1) In-depth literature review from a global perspective regarding the contribution of sediment OP to internal P loading with further summary about its pattern of distribution, accumulation and historical changes; (2) better mathematical models for describing drivers and the linkages between the biological pump of algal bloom and the replenishment of sediment OP; (3) fully accounting the composition and molecular size of OP for better understanding its transformation process and mechanism; ; (4) developing direct, high-sensitivity and combined techniques to improve the precision for identifying OP in sediments; (5) establishing the response of OP molecular properties and chemical reactivity to OP biodegradability and designing a comprehensive and accurate composite index to deepen the understanding for the bioavailability of OP; and (6) integrating fundamental processes of OP in current models to better describe the release and exchange of P in sediment-water interface (SWI). This work is expected to provide critical information about OP properties and deliver perspectives of novel characterization methods.

Long-term fertilization lowers the alkaline phosphatase activity by impacting the phoD-harboring bacterial community in rice-winter wheat rotation system

PhoD-harboring bacteria and the secreted alkaline phosphatases (ALP) are crucial in the regulation of soil phosphorus (P) cycling. However, the influential factors of these crucial indicators and their internal interactions remain controversial. Here, a long-term field experiment containing different fertilization regimes was conducted (chemical, organic, and no fertilizer applied). The results indicated that the richness and diversity of phoD-harboring bacterial community were significantly decreased after long-term fertilization. The applied fertilizer promoted the growth of competitive species, while phoD-harboring bacteria lost the advantage to outcompete other microorganisms after long-term fertilization. The decreased ALP activity was caused by the declined phoD gene abundance, which is attributed to the comprehensive effects of soil organic C (SOC), total nitrogen (TN), and various forms of P. The random forest models identified SOC, TN, and available P (AP) to be the dominant environmental factors in shaping the phoD-harboring bacterial community. In addition, some other forms of P such as organic P (Po), inorganic P (Pi) or total P (TP) also exerted significant effects. Different fertilization regimes changed the keystone genera that contributed significantly to soil ALP activities, while Pseudolabrys and Pseudomonas were predicted to be the most important genera regardless of different fertilization regimes. This study extends the understanding of the main process and mechanisms of P mobilization in response to different fertilization regimes.

Role of Mine Tailings in the Spatio-Temporal Distribution of Phosphorus in River Water: The Case of B1 Dam Break in Brumadinho

Human actions in the drainage network of hydrographic basins interfere with the functioning of ecosystems, causing negative impacts on the environment. Among these impacts, mass loads with a high concentration of phosphorus (P) have a significant potential for point and diffuse pollution of freshwater. The objective of this work was to model P spatially in the Paraopeba River basin, namely in the main water course and 67 sub-basins, and temporally in the years of 2019, 2020, and 2021, after the rupture of B1 tailings dam of Vale, SA company in Brumadinho (Minas Gerais Brazil). The distribution of total phosphorus concentrations (Pt) in relation to environmental attributes (terrain slope, soil class, and land use) and stream flow was assessed with the help of SWAT, the well-known Soil and Water Assessment Tool, coupled with box-plot and cluster analyses. The Pt were obtained from 33 sampling points monitored on a weekly basis. Mean values varied from 0.02 to 1.1 mg/L and maximum from 0.2 to 15.9 mg/L across the basin. The modeling results exposed an impact on the quality of Paraopeba River water in a stretch extending 8.8–155.3 km from the B1 dam, related with the rupture. In this sector, if the contribution from the rupture could be isolated from the other sources, the average Pt would be 0.1 mg/L. The highest Pt (15.9 mg/L) was directly proportional to the urban area of a sub-basin intersecting the limits of Betim town and Belo Horizonte Metropolitan Region. In general, urban sprawl as well as forest-agriculture and forest-mining conversions showed a close relationship with increased Pt, as did sub-basins with a predominance of argisols and an accentuated slope (>20%). There were various moments presenting Pt above legal thresholds (e.g., >0.15 mg/L), mainly in the rainy season.

Novel insights into molecular composition of organic phosphorus in lake sediments

Organic phosphorus (Po) plays a key role in eutrophication and ecological equilibrium in lake systems. However, characterizing the composition of Po in lake sediments has been a bottleneck hindering further understanding of the biogeochemical cycle of Po. Here, multiple methods of 31P NMR spectroscopy and molecular weight (MW) ultrafiltration were combined to detect Po composition characteristics from a novel angle in ten lake sediments of China. The results showed that sediment Po mainly consisted of monoester (mono-P, 14±8.8% of the NaOH-EDTA total P on average), diester (di-P, 1.4±1.4%) and phosphonate (phos-P, 0.1±0.1%), while the abundance of Po was largely underestimated by 31P NMR methods. Some specific species of mono-P were successfully determined, and the contents of these species followed a decreasing order: inositol hexakisphosphate (IHP6) > RNA mononucleotides (RNA-mnP) > β-glycerophosphate (β-gly) > D-glucose 6-phosphate (Glu-6) > α-glycerophosphate (α-gly), which was largely dependent upon their bioreactivity. A significant relationship between MW and Po components was observed despite the great differences among sediment samples. For refractory Po components, IHP6 was mainly rich in the MW < 3 kDa while phos-P was almost only detected in the MW > 3 kDa, which largely attributed to their metal binding affinities and characteristics. The abundance of bioreactive Po species (α-gly, β-gly, Glu-6, di-P) in high MW (HMW, > 3 kDa) were all higher than that of low MW (LMW, < 3 kDa) due to microbial degradation and self-assembly. If the HMW organic molecules were biologically and chemically more reactive than its LMW counterparts, the high percentage of α-gly, β-gly, glu-6 and di-P in the HMW portion would highlights their high reactivity from the perspective of MW. These insights revealed the dynamics of the MW distribution of Po components and provide valuable information to better understand the Po composition and bioreactivity in sediments.

Improving the humification and phosphorus flow during swine manure composting: A trial for enhancing the beneficial applications of hazardous biowastes

Improving the recovery of organic matter and phosphorus (P) from hazardous biowastes such as swine manure using acidic substrates (ASs) in conjunction with aerobic composting is of great interest. This work aimed to investigate the effects of ASs on the humification and/or P migration as well as on microbial succession during the swine manure composting, employing multivariate and multiscale approaches. Adding ASs, derived from wood vinegar and humic acid, increased the degree of humification and thermal stability of the compost. The ³¹P nuclear magnetic resonance spectroscopy and X-ray absorption near-edge structure analyses demonstrated compost P was in the form of struvite crystals, Ca/Al-P phases, and Poly-P (all inorganic P species) as well as inositol hexakisphosphate and Mono-P (organophosphorus species). However, the efficiency of P recovery could be improved by generating more struvite by adding the ASs. The flows among nutrient pools resulted from the diversity in the dominant microbial communities in different composting phases after introducing the ASs and appearance of Bacillus spp. in all phases. These results demonstrate the potential value of ASs for regulating and/or improving nutrients flow during the composting of hazardous biowastes for producing higher quality compost, which may maximize their beneficial benefits and applications.

Molecular weight driving bioavailability and intrinsic degradation mechanisms of dissolved organic phosphorus in lake sediment

The sediment dissolved organic phosphorus (DOP) for the "internal phosphorus (P) loading" has raised intensive concern, but its bioavailability and intrinsic degradation mechanism have not been fully elucidated. In this work, multi-techniques were combined to construct the response of sediments DOP's bioavailability to molecular weight (MW) based on ten lakes of China, thereby elucidating the intrinsic degradation mechanism of sediment DOP. A high percentage (74.5% on average) and significantly positive correlations with respect to different MWs were observed, highlighting the importance of DOP to dissolved P in sediments. DOP is mainly composed of a low MW (LMW) portion (63.8%) and the substances are primarily derived from microbial sources. Bioavailable DOP species were closely related to MW, with labile monoester P and diester P decreased with decreasing MW. Analysis of environmental processes showed that microbial utilization capacity and the characteristics of dissolved organic matter (DOM) with different MWs were the dominant drivers in determining the bioavailability of DOP. That is, microorganisms exhibit high DOM utilization capacity in LMW portion, promoting the degradation and transformation of bioavailable DOP species. Furthermore, the increased humic and fulvic-like substances by microbial degradation might in turn inhibit the enzymatic hydrolysis of LMW-DOP. This pattern explains why the contents of LMW-DOP are very high, but it contains less bioavailable DOP. By studying the bioavailability of sediment DOPs with different MWs, it is found that, under natural conditions, labile monoester and diester P in LMW-DOP have a high tendency to degrade than those in HMW-DOP. The results further show that, microbial utilization and DOM characteristics, as well as their linkage with DOP's bioavailability and degradability, have important implications for assessing DOP's degradation potential. The insights from this study might shed light on more effective strategies for mitigating the risks of "internal P loading".

Effects of microorganism-mediated inoculants on humification processes and phosphorus dynamics during the aerobic composting of swine manure

There is significant interest in the treatment of swine manure, which is a hazardous biowaste and a source of pathogenic contamination. This work investigated the effects of microorganism-mediated inoculants (MMIs) on nutrient flows related to humification or phosphorus (P) dynamics during the aerobic composting of swine manure. The impact of MMIs on microbe succession was also evaluated. The addition of MMIs had positive effects associated with nutrient flows, including thermal activation, decreases in certain fluorescence emissions, lower mass loss and variations in levels of certain elements and functional groups. MMIs altered the maturation behavior and kinetics of organic matter while improving microbial activity. Phosphorus was found in the compost in the forms of MgNH₄PO₄·6H₂O crystals and Poly-P as the IP species, and Mono-P as the OP species in compost generated from the dissolution or inter-transformation among P pools. These nutrient flows are attributed to changes in the structure of microbial communities as a consequence of introducing MMIs. Diverse microbial compositions were identified in different composting phases, although Bacillus appeared in each phase. This work provides support for the aerobic composting of hazardous biowaste as well as an improved understanding of nutrient flows, as a means of producing higher quality compost.

Crop type exerts greater influence upon rhizosphere phosphohydrolase gene abundance and phylogenetic diversity than phosphorus fertilization

Rock phosphate is an alternative form of phosphorus (P) fertilizer; however, there is no information regarding the influence of P fertilizer sources in Brazilian Cerrado soils upon microbial genes coding for phosphohydrolase enzymes in crop rhizospheres. Here, we analyze a field experiment comparing maize and sorghum grown under different P fertilization (rock phosphate and triple superphosphate) upon crop performance, phosphatase activity and rhizosphere microbiomes at three levels of diversity: small subunit rRNA marker genes of bacteria, archaea and fungi; a suite of alkaline and acid phosphatase and phytase genes; and ecotypes of individual genes. We found no significant difference in crop performance between the fertilizer sources, but the accumulation of fertilizer P into pools of organic soil P differed. Phosphatase activity was the only biological parameter influenced by P fertilization. Differences in rhizosphere microbiomes were observed at all levels of biodiversity due to crop type, but not fertilization. Inspection of phosphohydrolase gene ecotypes responsible for differences between the crops suggests a role for lateral genetic transfer in establishing ecotype distributions. Moreover, they were not reflected in microbial community composition, suggesting that they confer competitive advantage to individual cells rather than species in the sorghum rhizosphere.

Critical Review of Polyphosphate and Polyphosphate Accumulating Organisms for Agricultural Water Quality Management

Despite ongoing management efforts, phosphorus (P) loading from agricultural landscapes continues to impair water quality. Wastewater treatment research has enhanced our knowledge of microbial mechanisms influencing P cycling, especially regarding microbes known as polyphosphate accumulating organisms (PAOs) that store P as polyphosphate (polyP) under oxic conditions and release P under anoxic conditions. However, there is limited application of PAO research to reduce agricultural P loading and improve water quality. Herein, we conducted a meta-analysis to identify articles in Web of Science on polyP and its use by PAOs across five disciplines (i.e., wastewater treatment, terrestrial, freshwater, marine, and agriculture). We also summarized research that provides preliminary support for PAO-mediated P cycling in natural habitats. Terrestrial, freshwater, marine, and agriculture disciplines had fewer polyP and PAO articles compared to wastewater treatment, with agriculture consistently having the least. Most meta-analysis articles did not overlap disciplines. We found preliminary support for PAOs in natural habitats and identified several knowledge gaps and research opportunities. There is an urgent need for interdisciplinary research linking PAOs, polyP, and oxygen availability with existing knowledge of P forms and cycling mechanisms in natural and agricultural environments to improve agricultural P management strategies and achieve water quality goals.

Hierarchical Reactivity of Enzyme-Mediated Phosphorus Recycling from Organic Mixtures by Aspergillus niger Phytase

Biological recycling of inorganic phosphorus (P_i) from organic phosphorus (P_o) compounds by phosphatase-type enzymes, including phytases, is an important contributor to the pool of bioavailable P to plants and microorganisms. However, studies of mixed-substrate reactions with these enzymes are lacking. Here, we explore the reactivity of a phytase extract from the fungus Aspergillus niger toward a heterogeneous mixture containing, in addition to phytate, different structures of environmentally relevant P_o compounds such as ribonucleotides and sugar phosphates. Using a high-resolution liquid chromatography-mass spectrometry method to monitor simultaneously the parent P_o compounds and their by-products, we captured sequential substrate-specific evolution of P_i from the mixture, with faster hydrolysis of multiphosphorylated compounds (phytate, diphosphorylated sugars, and di- and tri-phosphorylated ribonucleotides) than hydrolysis of monophosphorylated compounds (monophosphorylated sugars and monophosphorylated ribonucleotides). The interaction mechanisms and energies revealed by molecular docking simulations of each P_o compound within the enzyme's active site explained the substrate hierarchy observed experimentally. Specifically, the favorable orientation for binding of the negatively charged phosphate moieties with respect to the positive potential surface of the active site was important. Collectively, our findings provide mechanistic insights about the broad but hierarchical role of phytase-type enzymes in P_i recycling from the heterogeneous assembly of P_o compounds in agricultural soils or wastes.

Accessing Legacy Phosphorus in Soils

Repeated applications of phosphorus (P) fertilizers result in the buildup of P in soil (commonly known as legacy P), a large fraction of which is not immediately available for plant use. Long-term applications and accumulations of soil P is an inefficient use of dwindling P supplies and can result in nutrient runoff, often leading to eutrophication of water bodies. Although soil legacy P is problematic in some regards, it conversely may serve as a source of P for crop use and could potentially decrease dependence on external P fertilizer inputs. This paper reviews the (1) current knowledge on the occurrence and bioaccessibility of different chemical forms of P in soil, (2) legacy P transformations with mineral and organic fertilizer applications in relation to their potential bioaccessibility, and (3) approaches and associated challenges for accessing native soil P that could be used to harness soil legacy P for crop production. We highlight how the occurrence and potential bioaccessibility of different forms of soil inorganic and organic P vary depending on soil properties, such as soil pH and organic matter content. We also found that accumulation of inorganic legacy P forms changes more than organic P species with fertilizer applications and cessations. We also discuss progress and challenges with current approaches for accessing native soil P that could be used for accessing legacy P, including natural and genetically modified plant-based strategies, the use of P-solubilizing microorganisms, and immobilized organic P-hydrolyzing enzymes. It is foreseeable that accessing legacy P will require multidisciplinary approaches to address these limitations.

Phosphorus lability increases with the rehabilitation advance of iron mine land in the eastern Amazon

Impacted areas by iron mining may face challenges in the management of phosphate fertilization and reduced efficiency of rehabilitation practices, thus extending the time required for the rehabilitation of these areas. The objective of this study was to evaluate phosphorus (P) lability in soils of native forest and ferriferous canga areas (savanna vegetation above ironstone outcrops covering iron ore deposits) and in iron mine waste piles undergoing rehabilitation. Benches of the analysed waste pile differ in age of rehabilitation: as the initial rehabilitation stage (INI), we consider benches with fewer than 3 years of rehabilitation; the intermediate stage (INT) were benches with up to 5 years of rehabilitation; and the advanced rehabilitation stage (ADV) corresponds to benches with more than 8 years of rehabilitation activities. Organic and inorganic P fractions were analysed in these areas by chemical fractionation and were classified according to the degree of soil lability. The results show that in the canga environment, there was a predominance of inorganic fractions of moderate lability and moderate stability, with a strong dependency of the soil organic matter (SOM) on the P fractions, whereas there was a greater participation of the moderately labile organic fractions in the forest than in the canga. On the other hand, in the rehabilitation areas, there was an increase in the labile organic and inorganic fractions as the rehabilitation process advanced. The distribution of P in areas undergoing rehabilitation indicates that there is a tendency for P levels to resemble those of native environments, such as the forests.

Quantitative measures of myo-IP6 in soil using solution 31P NMR spectroscopy and spectral deconvolution fitting including a broad signal

Inositol phosphates, particularly myo-inositol hexakisphosphate (myo-IP6), are an important pool of soil organic phosphorus (P) in terrestrial ecosystems. To measure concentrations of myo-IP6 in alkaline soil extracts, solution 31P nuclear magnetic resonance (NMR) spectroscopy is commonly used. However, overlap of the NMR peaks of myo-IP6 with several other peaks in the phosphomonoester region requires spectral deconvolution fitting (SDF) to partition the signals and quantify myo-IP6. At present, two main SDF approaches are in use; the first fits a Lorentzian/Gaussian lineshape to the myo-IP6 peaks directly to the baseline without an underlying broad signal, and the second fits a Lorentzian/Gaussian lineshape to the myo-IP6 peaks simultaneously with an underlying broad peak. The aim of this study was to compare the recovery of added myo-IP6 to soil extracts using both SDF procedures for six soil samples of diverse origin and differing concentrations of organic P (112 to 1505 mg P per kgsoil). The average recovery of total added myo-IP6 was 95% (SD 5) and 122% (SD 32) using SDF with and without an underlying broad signal, respectively. The recovery of individual peaks of myo-IP6 differed, most notably, the C5 phosphate peak of myo-IP6 was overestimated by up to 213% when a broad peak was not included in SDF. Based on the SDF procedure that includes a broad peak, concentrations of myo-IP6 ranged from 0.6 to 90.4 mg P per kgsoil, which comprised 1-23% of total phosphomonoesters. Our results demonstrate that the SDF procedure with an underlying broad signal is essential for the accurate quantification of myo-IP6 in soil extracts.

Can soil phosphorus availability in tropical forest systems be increased by nitrogen-fixing leguminous trees?

Understanding the role of N-fixing leguminous trees for phosphorus (P) cycling in highly weathered tropical soils is relevant for the conservation of natural forests as well as the sustainable management of agroforests and forest plantations with low P input in the Brazilian Atlantic Forest region. We hypothesized that N-fixing leguminous trees can increase the availability of soil P by exploiting different P sources without causing a depletion of soil organic P due to efficient biogeochemical cycling, but empirical evidence remains scarce. For this purpose, ³¹P nuclear magnetic resonance spectroscopy (³¹P NMR) was used for quantifying soil P forms and the Hedley sequential extraction to determine soil P fractions. The studied sites were forestry systems with leguminous trees: mixed forest plantations with different proportions of fast-growing N-fixing leguminous trees; pure plantations, and agroforestry systems with leguminous trees. The results show that all N-fixing leguminous trees and N mineral fertilization positively affected the concentrations of available soil P in relation to the control treatments. There were increases of all P fractions through cycling in all forest sites. ³¹P NMR spectra clearly identified and quantified that a large amount of phosphomonoesters followed by phosphodiesters in the form of DNA, as well as high reserves of P_i species (ortho-P and pyrophosphate) in the first eleven years of growth at pure plantations, mixed plantations or agroforests. The relations between both ortho-P and DNA with the resin-P_i, NaHCO₃-P_i and NaOH-P_i fractions suggest that both analysis methods provide complementary information about the soil P transformations. Thus, the paper highlights the importance of the use of different N-fixing leguminous tree species under different environmental conditions, production systems and management practices for recovering heavily degraded areas, which may be a suitable strategy through efficient management of P in highly weathered tropical soils in the Brazilian Atlantic Forest biome.

Identification and quantification of myo-inositol hexakisphosphate in complex environmental matrices using ion chromatography and high-resolution mass spectrometry in comparison to 31P NMR spectroscopy

Myo-inositol hexakisphosphate, or phytic acid, (myo-IP6) is a key organic phosphorus (P) compound in soils and manures. Determinations of myo-IP6 in soils and manure extracts are frequently performed by ³¹P NMR spectroscopy. This approach is time-consuming in terms of both sample preparation and instrument time, with uncertainties existing in relation to accuracy of identification and quantification due to potentially interfering resonances from co-extracted P species. In contrast, ion chromatography (IC) in combination with high-resolution mass spectrometry (HRMS) negative ion, electrospray ionisation (ESI) has been shown to enable highly specific identifications of myo-IP6 isolated from complex mixtures. In this paper, IC and ESI-HRMS were applied to the identification and the quantification of myo-IP6 isolated from soils and manures using NaOH-EDTA extraction, and quantifications based on IC. ESI-HRMS analysis of eluate trapped from IC unequivocally confirmed identification of myo-IP6 from a soil extract. The ion suppression cell of the IC instrument provides isolates of the analyte free of ionic components that would interfere with ESI. The myo-IP6 was identified in the NMR by comparing spectra of extracts of soils with and without authentic myo-IP6 "spiked" prior to extraction. Comparison of quantification via standard addition in IC and NMR analysis gave good correlation (r = 0.955). IC with ESI-HRMS was found to be more sensitive, rapid and reliable for the identification and quantification of myo-IP6 with a limit of detection (LOD) of 0.7 mg kg^-1 and limit of quantification (LOQ) of 2.1 mg kg^-1 using IC versus > 10 mg kg^-1 LOD using ³¹P NMR.

A Novel Approach for the Quantification of Different Inorganic and Organic Phosphorus Compounds in Environmental Samples by P L2,3-Edge X-ray Absorption Near-Edge Structure (XANES) Spectroscopy

Phosphorus (P) is an essential element for life on Earth, with an important and oftentimes unaccounted organic biogeochemical component. Current methods for the quantification of different organic P compounds in environmental samples (e.g., soils, sediments) are based on extraction techniques and often associated with incomplete P recovery or sample changes. In this study, we present a protocol for the quantification of different organic and inorganic P species in soils using synchrotron-based X-ray absorption near-edge structure (XANES) spectroscopy at the P L_2,3-edge. Its accuracy and precision was evaluated by analyzing 40 standard mixtures composed of seven different inorganic and organic P compounds (with a mean of R² = 0.85). In addition, we quantified the P species of two soils and two agro-industrial byproducts using P L_2,3-edge XANES spectroscopy and the results were compared with those obtained by P K-edge XANES or ³¹P NMR spectroscopy. Using the P L_2,3-edge, we identified different organic P species, including those not identified by the common P K-edge XANES. However, there is a consistent underestimation of organic polyphosphates. Overall, the application of P L_2,3-edge XANES provides a higher level of information than by P K-edge XANES, although the ubiquitous use of this novel methodology is still limited to samples with a phosphorus content above 3 mg g^-1.

Methodology and validation of a new tandem mass spectrometer method for the quantification of inorganic and organic 18O-phosphate species

Phosphorus (P) fertilizers are crucial to achieve peak productivity in agricultural systems. However, the fate of P fertilizers via microorganism incorporation and the exchange processes between soil pools is not well understood. 18Oxygen-labelled phosphate (18O- Pi) can be tracked as it cycles through soil systems. Our study describes biological and geochemical P dynamics using a tandem mass spectrometry (MS/MS) method for the absolute quantification of 18O- Pi. Soil microcosms underwent three treatments: (i) 18O- Pi, (ii) unlabelled phosphate (16O- Pi) or (iii) Milli-Q control, dissolved in a bio-stimulatory solution. During a 6-week series the microcosms were sampled to measure P by Hedley sequential fractionation and DNA extraction samples digested to 3'-deoxynucleoside 5'-monophosphates (dNMP). A MS/MS attached to a HPLC analyzed each P-species through collision-induced dissociation. The resin-extractable and bicarbonate 18O- Pi and 16O- Pi fractions displayed similar precipitation and adsorption-desorption trends. Biotic activity measured in the NaOH and dNMP fractions rapidly delabelled 18O- Pi; however, the MS/MS measured some 18O that remained between the P backbone and deoxyribose sugars. After 6 weeks, the 18O- Pi had not reached the HCl soil pool, highlighting the long-term nature of P movement. Our methodology improves on previous isotopic tracking methods as endogenous P does not dilute the system, unlike 32P techniques, and measured total P is not a ratio, dissimilar from natural abundance techniques. Measuring 18O- Pi using MS/MS provides information to enhance land sustainability and stewardship practices regardless of soil type by understanding both the inorganic movement of P fertilizers and the dynamic P pool in microbial DNA.

Characterization of fluvo-aquic soil phosphorus affected by long-term fertilization using solution 31P NMR spectroscopy

Reducing the applications of mineral phosphorus (P) fertilizers and supplementing them by organic fertilizers is becoming a necessary practice in the North China Plain due to overuse of mineral P fertilizers and improper disposal of organic wastes. Knowledge is needed about how the long-term substitution of mineral fertilizers by organic fertilizers affects soil P forms in order to understand soil P transformation and crop P uptake. In this study, we used solution ³¹P nuclear magnetic resonance (NMR) spectroscopy to characterize P forms in fluvo-aquic soil after 26 years of different fertilization management strategies, organic compost (OM), half compost in combination with half mineral fertilizer NPK (1/2 OM), mineral fertilizer NPK (NPK), mineral fertilizer NK (NK), and an unfertilized control (CK). Results showed that the P extraction efficiency using NaOH-EDTA varied from 13.0 to 27.7% for the soils of the treatments. ³¹P NMR spectra indicated that the majority of P was in the form of orthophosphate for all the treatments, which constituted 64.3-83.5% of the total extracted P. The application of P fertilizers significantly increased the concentrations of orthophosphate, monoesters and diesters regardless of the P fertilization method, although the proportions of monoesters and diesters were higher in CK. The proportions and concentrations of orthophosphate significantly decreased when all mineral fertilizers were replaced by compost. There was no significant difference in the proportions and concentrations of total organic P, corrected monoesters and diesters in NaOH-EDTA extracts of soils among NPK, 1/2OM and OM treatments. Decreasing mineral P fertilizers and partly replacing them by organic fertilizer in fluvo-aquic soil might increase soil test (Olsen) P and crop P uptake through the degradation of applied organic P forms.

Simulation of Phosphorus Chemistry, Uptake and Utilisation by Winter Wheat

The phosphorus (P) supply from soils is crucial to crop production. Given the complexity involved in P-cycling, a model that can simulate the major P-cycling processes and link with other nutrients and environmental factors, e.g., soil temperature and moisture, would be a useful tool. The aim of this study was to describe a process-based P module added to the SPACSYS (Soil Plant and Atmosphere Continuum System) model and to evaluate its predictive capability on the dynamics of P content in crops and the impact of soil P status on crop growth. A P-cycling module was developed and linked to other modules included in the SPACSYS model. We used a winter wheat (Triticum aestivum, cv Xi-19) field experiment at Rothamsted Research in Harpenden to calibrate and validate the model. Model performance statistics show that the model simulated aboveground dry matter, P accumulation and soil moisture dynamics reasonably well. Simulated dynamics of soil nitrate and ammonium were close to the observed data when P fertiliser was applied. However, there are large discrepancies in fields without P fertiliser. This study demonstrated that the SPACSYS model was able to investigate the interactions between carbon, nitrogen, P and water in a single process-based model after the tested P module was implemented.

Soil Phosphorus Modeling for Modern Agriculture Requires Balance of Science and Practicality: A Perspective

The use of phosphorus (P) fertilizers in arable crop and pastoral systems is expected to change as modern agriculture is challenged to produce more food with fewer inputs. Agricultural systems models offer a dual purpose to support and integrate recent scientific advances and to identify strategies for farmers to improve nutrient efficiency. However, compared with nitrogen and carbon, advances in P modeling have been less successful. We assessed the potential opportunity of P modeling to increase P efficiency for modern agriculture and identified the current challenges associated with modeling P dynamics at the field scale. Three major constraints were (i) a paucity of detailed field datasets to model strategies aimed at increasing P use efficiency, (ii) a limited ability to predict P cycling and availability under the local effects of climate change, and (iii) a restricted ability to match measured soil P fractions to conceptual and modelable pools in soils with different mineral properties. To improve P modeling success, modelers will need to walk a tightrope to balance the roles of assisting detailed empirical research and providing practical land management solutions. We conclude that a framework for interdisciplinary collaboration is needed to acquire suitable datasets, continually assess the need for model adjustment, and provide flexibility for progression of scientific theory. Such an approach is likely to advance P management for increased P use efficiency.

Abiotic phosphorus recycling from adsorbed ribonucleotides on a ferrihydrite-type mineral: Probing solution and surface species

Iron (Fe) (oxyhydr)oxide minerals, which are amongst most reactive minerals in soils and sediments, are known to exhibit strong adsorption of inorganic phosphate (P_i) and organophosphate (P_o) compounds. Beyond synthetic P_o compounds, much still remains unknown about the reactivity of these minerals to transform naturally-occurring P_o compounds to P_i, particularly with respect to solution versus surface speciation of P_o hydrolysis. To investigate this reactivity with a ferrihydrite-type mineral and ribonucleotides, we employed high-resolution liquid chromatography-mass spectrometry (LC-MS), X-ray absorption near-edge structure (XANES), Fourier-transform infrared (FTIR) spectroscopy, and molecular modeling. Kinetic experiments were conducted with the mineral (1 g L^-1) reacted with adenosine monophosphate, diphosphate, or triphosphate (respectively AMP, ADP, ATP; 50 µM). Analysis of solution organic species by LC-MS implied that only adsorption occurred with AMP and ADP but both adsorption and dephosphorylation of ATP were evident. Maximum adsorption capacities per gram of mineral were 40.6 ± 0.8 µmol AMP, 35.7 ± 1.6 µmol ADP, and 10.9 ± 1.0 µmol ATP; solution dephosphorylated by-products accounted for 15% of initial ATP. Subsequent XANES analysis of the surface species revealed that 16% of adsorbed AMP and 30% of adsorbed ATP were subjected to dephosphorylation, which was not fully quantifiable from the solution measurements. Molecular simulations predicted that ADP and ATP were complexed mainly via the phosphate groups whereas AMP binding also involved multiple hydrogen bonds with the adenosine moiety; our FTIR data confirmed these binding confirmations. Our findings thus imply that specific adsorption mechanisms dictate the recycling and subsequent trapping of P_i from ribonucleotide-like biomolecules reacted with Fe (oxyhydr)oxide minerals.

Speciation of Phosphorus from Agricultural Muck Soils to Stream and Lake Sediments

The nature and management of agricultural soils can influence the forms of legacy P present in affected sediments; however, few studies have specifically characterized P in sediments affected by polder agriculture. In this study, the speciation of P as it flows from the muck soils of the Holland Marsh to the sediments of the West Holland River and Lake Simcoe, Ontario, Canada, was investigated. The distribution of P fractions and the characterization of organic P were analyzed by the sequential fractionation method and solution P nuclear magnetic resonance spectroscopy, respectively. Organic P was the predominant P form (∼58% of total P) in muck soils, whereas the redox-sensitive P fraction was predominant in surface stream sediments rich in organic matter (∼41-48% of total P), despite these sediments exhibiting near-neutral pH and high concentrations of both Ca and P. The proportion of relatively recalcitrant organic P forms was much greater in the muck soils than that exhibited by both stream and lake sediments. The decreasing proportion of recalcitrant organic P forms in sediments downstream from the Holland Marsh indicated the potential for faster organic P cycling. Our findings support the notion that diesters and pyrophosphate should be monitored, in addition to loosely bound inorganic P, due to their potential impact on water quality. The unique environment of the streams and lake area is considered to be particularly vulnerable to excessive fertilizer P use in adjacent croplands.

Characterizing the phosphorus forms extracted from soil by the Mehlich III soil test

Phosphorus (P) can limit crop production in many soils, and soil testing is used to guide fertilizer recommendations. The Mehlich III (M3) soil test is widely used in North America, followed by colorimetric analysis for P, or by inductively coupled plasma-based spectrometry (ICP) for P and cations. However, differences have been observed in M3 P concentrations measured by these methods. Using 31P nuclear magnetic resonance (P-NMR) and mass spectrometry (MS), we characterized P forms in M3 extracts. In addition to the orthophosphate that would be detected during colorimetric analysis, several organic P forms were present in M3 extracts that would be unreactive colorimetrically but measured by ICP (molybdate unreactive P, MUP). Extraction of these P forms by M3 was confirmed by P-NMR and MS in NaOH-ethylenediaminetetraacetic acid extracts of whole soils and residues after M3 extraction. The most abundant P form in M3 extracts was myo-inositol hexaphosphate (myo-IHP, phytate), a compound that may not contribute to plant-available P if tightly sorbed in soil. Concentrations of myo-IHP and other organic P forms varied among soils, and even among treatment plots on the same soil. Extraction of myo-IHP in M3 appeared to be linked to cations, with substantially more myo-IHP extracted from soils fertilized with alum-treated poultry litter than untreated litter. These results suggest that ICP analysis may substantially over-estimate plant-available P in samples with high MUP concentrations, but there is no way at present to determine MUP concentrations without analysis by both colorimetry and ICP. This study also tested procedures that will improve future soil P-NMR studies, such as treatment of acid extracts, and demonstrated that techniques such as P-NMR and MS are complimentary, each yielding additional information that analysis by a single technique may not provide.

Handling the phosphorus paradox in agriculture and natural ecosystems: Scarcity, necessity, and burden of P

This special issue of Ambio compiles a series of contributions made at the 8th International Phosphorus Workshop (IPW8), held in September 2016 in Rostock, Germany. The introducing overview article summarizes major published scientific findings in the time period from IPW7 (2015) until recently, including presentations from IPW8. The P issue was subdivided into four themes along the logical sequence of P utilization in production, environmental, and societal systems: (1) Sufficiency and efficiency of P utilization, especially in animal husbandry and crop production; (2) P recycling: technologies and product applications; (3) P fluxes and cycling in the environment; and (4) P governance. The latter two themes had separate sessions for the first time in the International Phosphorus Workshops series; thus, this overview presents a scene-setting rather than an overview of the latest research for these themes. In summary, this paper details new findings in agricultural and environmental P research, which indicate reduced P inputs, improved management options, and provide translations into governance options for a more sustainable P use.

Diffusion-Ordered Nuclear Magnetic Resonance Spectroscopy (DOSY-NMR): A Novel Tool for Identification of Phosphorus Compounds in Soil Extracts

Liquid-state, one-dimension ³¹P nuclear magnetic resonance spectroscopy (NMR) has greatly advanced our understanding of the composition of organic phosphorus in the environment. However, the correct assignment of signals is complicated by overlapping and shifting signals in different types of soils. We applied therefore for the first time diffusion-ordered spectroscopy (DOSY) to soil extracts, allowing us to separate phosphorus components in the second domain based on their translational diffusion coefficients. After successful application to a mixture of 14 model compounds, diffusion rates correlated closely with the molecular weight of the individual compound in aqueous solution (R² = 0.97). The method was then applied to NaOH/EDTA extracts of a grassland soil, of which paramagnetic contaminations were removed with sodium sulfide following high-velocity centrifugation (21 500g, 45 min) at 4 °C. Diffusion rates in soil extracts were again closely related to molecular weight (R² = 0.98), varying from 163.9 to 923.8 Da. However, our DOSY application failed for a forest soil with low organic phosphorus content. Overall, DOSY did help to clearly identify specific NMR signals like myo- and scyllo-inositol hexakisphosphate. It thus provides a more confident signal assignment than 1D ³¹P NMR, although currently the ubiquitous use of this novel methodology is still limited to soils with high organic phosphorus content.

Soil organic phosphorus transformations during 2000 years of paddy-rice and non-paddy management in the Yangtze River Delta, China

The contents and properties of soil organic phosphorus (P_o) largely drive ecosystem productivity with increasing development of natural soil. We hypothesized that soil P_o would initially increase with paddy management and then would persist under steady-state conditions. We analyzed soils from a 2000-year chronosequence of a rice-wheat rotation and an adjacent non-paddy 700-year chronosequence in Bay of Hangzhou (China) for their P_o composition using solution ³¹P-NMR after NaOH-EDTA extraction. Land reclamation promoted P_o accumulation in both paddy and non-paddy topsoils (depths ≤ 18 cm) until steady-state equilibria were reached within 200 years of land use. Greater P_o concentrations were found, however, in the non-paddy subsoils than in those under paddy management. Apparently, the formation of a dense paddy plough pan hindered long-term P_o accumulation in the paddy subsoil. The surface soils showed higher proportions of orthophosphate diesters under paddy than under non-paddy management, likely reflecting suppressed decomposition of crop residues despite elevated microbial P compounds stocks under anaerobic paddy-rice management. Intriguingly, the composition of P_o was remarkably stable after 194-years of paddy management and 144-years of non-paddy management, suggesting novel steady-state equilibria of P dynamics had been reached in these man-made ecosystems after less than two centuries.

Opportunities for mobilizing recalcitrant phosphorus from agricultural soils: a review

BACKGROUND

Phosphorus (P) fertilizer is usually applied in excess of plant requirement and accumulates in soils due to its strong adsorption, rapid precipitation and immobilisation into unavailable forms including organic moieties. As soils are complex and diverse chemical, biochemical and biological systems, strategies to access recalcitrant soil P are often inefficient, case specific and inconsistently applicable in different soils. Finding a near-universal or at least widely applicable solution to the inefficiency in agricultural P use by plants is an important unsolved problem that has been under investigation for more than half a century.

SCOPE

In this paper we critically review the strategies proposed for the remobilization of recalcitrant soil phosphorus for crops and pastures worldwide. We have additionally performed a meta-analysis of available soil 31P-NMR data to establish the potential agronomic value of different stored P forms in agricultural soils.

CONCLUSIONS

Soil inorganic P stocks accounted on average for 1006 ± 115 kg ha-1 (57 ± 7%), while the monoester P pool accounted for 587 ± 32 kg ha-1 (33 ± 2%), indicating the huge potential for the future agronomic use of the soil legacy P. New impact driven research is needed in order to create solutions for the sustainable management of soil P stocks.

Long-term Changes in Grassland Soil Phosphorus with Fertilizer Application and Withdrawal

Long-term phosphorus (P) applications can increase soil P concentrations in excess of agronomic optima, posing a risk to water quality. Once fertilization stops, however, it may take time for soil P concentrations to decline. Whereas P fertilization adds orthophosphate, little is known about changes in other soil P forms during P buildup and drawdown. This study examined changes in P pools (total P, Olsen P, Mehlich P, and water-extractable P) and P forms determined by P-nuclear magnetic resonance spectroscopy (P-NMR) in grazed grassland plots from Northern Ireland. Between 1994 and 1999, all plots received 8.3 kg P ha yr with variable rates of nitrogen (100-500 kg N ha yr). From 2000 to 2005, plots received 0, 20, 40, or 80 kg P ha yr and 250 kg N ha yr; from 2005 to 2010, no P fertilizer was applied to any plots. In 2005, soil P pool concentrations at the highest P fertilization rates were significantly elevated compared with those in 2000 but had decreased to 2000 concentrations by 2010. In soils receiving no P, soil P pool concentrations were significantly lower than those in 1994 only in 2010. There were few changes in P forms determined by P-NMR. Orthophosphate followed the same trend observed for the soil P pools; total organic P, total inositol phosphates, and total orthophosphate monoesters and diesters were highest in 2010 in the soil receiving no P fertilizer for 10 yr. For these soils, fertilizer application and cessation influenced inorganic P more than organic P.

Imaging Organophosphate and Pyrophosphate Sequestration on Brucite by in Situ Atomic Force Microscopy

In order to evaluate the organic phosphorus (OP) and pyrophosphate (PyroP) cycle and their fate in the environment, it is critical to understand the effects of mineral interfaces on the reactivity of adsorption and precipitation of OP and PyroP. Here, in situ atomic force microscopy (AFM) is used to directly observe the kinetics of coupled dissolution-precipitation on cleaved (001) surfaces of brucite [Mg(OH)₂] in the presence of phytate, glucose-6-phosphate (G6P) and pyrophosphate, respectively. AFM results show that the relative order of contribution to mineral surface adsorption and precipitation is phytate > pyrophosphate > G6P under the same solution conditions and can be quantified by the induction time of OP/PyroP-Mg nucleation in a boundary layer at the brucite-water interface. Calculations of solution speciation during brucite dissolution in the presence of phytate or pyrophosphate at acidic pH conditions show that the solutions may reach supersaturation with respect to Mg₅H₂Phytate.6H₂O as a Mg-phytate phase or Mg₂P₂O₇ as a Mg-pyrophosphate phase that becomes thermodynamically stable before equilibrium with brucite is reached. This is consistent with AFM dynamic observations for the new phase formations on brucite. Direct nanoscale observations of the transformation of adsorption/complexation-surface precipitation, combined with spectroscopic characterizations and species simulations may improve the mechanistic understanding of organophosphate and pyrophosphate sequestration by mineral replacement reactions through a mechanism of coupled dissolution-precipitation occurring at mineral-solution interfaces in the environment.