Evaluation of the Intrinsic Zn(II) Affinity of a Cys3His1 Site in the Absence of Protein Folding Effects

A novel fluorescent chemosensor for detection of Zn(II) ions based on dansyl-appended dipeptide in two different living cells

This paper describes a new fluorescent chemosensor (DSH) based on dipeptide conjugated with dansyl group, which was synthesized by solid phase peptide synthesis (SPPS) technology. DSH exhibited a highly selective and sensitive toward Zn²⁺ ions by "turn-on" response based on generation of monomer-excimer mechanism in aqueous solutions, and the detection limit was calculated at 11.2 nM. In addition, the reversible of DSH-Zn with Na₂EDTA establishes the reuse of DSH, and the circulation effect was very good. Moreover, DSH had good water solubility, and was successfully applied to bioimage intracellular Zn²⁺ ions and Na₂EDTA in two different living cells with exciting cellular permeability and low cytotoxicity, which indicated that DSH had great potential in the application of biological imaging.

Highly selective and sensitive detection of Zn(II) and Cu(II) ions using a novel peptide fluorescent probe by two different mechanisms and its application in live cell imaging

Metalloproteins are often a useful template for the design and development of peptide fluorescent probes. Herein, we report a novel and simple fluorescent probe L comprised of tetrapeptide and dansyl groups by the solid phase peptide synthesis (SPPS). As a multifunctional analytical probe, L exhibited a highly selective "turn-on" fluorescent response to zinc ions, and a selective "turn-off" fluorescent response to copper ions at an excitation wavelength of 330 nm. The high sensitivity of L was made possible photo-induced electron transfer (PET), and L exhibited very low detection limits for Zn²⁺ and Cu²⁺ of 4.9 nM and 15 nM in 100% aqueous solutions, respectively. Furthermore, L displayed very low biotoxicity and excellent cell permeability, and was successfully used for detection of Zn²⁺ and Cu²⁺ in living HeLa cells based on two different mechanisms. We believe that the probe L may have many potential applications in environmental and biological research.

Mechanism of Tetramer Dissociation, Unfolding, and Oligomer Assembly of Pneumovirus M2-1 Transcription Antiterminators

Among Mononegavirales, the Pneumovirus family stands out by its RNA polymerase processivity that relies on a transcription antiterminator, the M2-1 protein, which also plays a key role in viral particle assembly. Biophysical and structural evidence shows that this RNA-binding tetramer is strongly modulated by a CCCH Zn²⁺ binding motif. We show that while the global dissociation/unfolding free energy is 10 kcal mol^-1, more stable for the respiratory syncytial virus M2-1, the human metapneumovirus (HMPV) counterpart shows a 7 kcal mol^-1 higher intersubunit affinity. Removal of Zn²⁺ from both homologues leads to an apo-monomer of identical secondary structure that further undergoes a slow irreversible oligomerization. Mutation of the histidine residue of the Zn²⁺ motif to cysteine or alanine leads directly to large oligomers, strongly suggesting that metal coordination has an exquisite precision for modulating the quaternary arrangement. Zn²⁺ removal is very slow and requires subdenaturing concentrations of guanidine chloride, suggesting a likely local folding energy barrier. Exploring a broad combination of denaturant and ethylenediaminetetraacetic acid conditions, we showed that the metapneumovirus protein has to overcome a higher energy barrier to trigger Zn²⁺ removal-driven dissociation, in concordance with a slower dissociation kinetics. In silico modeling of open and close conformations for both M2-1 tetramers together with interaction energy calculations reveals that the gradual opening of protomers decreases the number of intersubunit contacts. Half of the interaction energy holding each protomer in the tetramer comes from the CCCH motif, while HMPV-M2-1 harbors additional contacts between the CCCH motif of one subunit and the core domain of a protomer located in trans, allowing the rationalization of the experimental data obtained. Overall, the evidence points at a key role of the CCCH motif in switching between structural and consequently functional alternatives of the M2-1 protein.

High selective and sensitive detection of Zn(II) using tetrapeptide-based dansyl fluorescent chemosensor and its application in cell imaging

The zinc ions (Zn²⁺) play extremely irreplaceable role in the organism and the environment, the design and synthesis of a biomolecule-based fluorescence chemosensor for the detection of Zn²⁺ with high sensitivity is very important. Herein, a novel tetrapeptide-based dansyl fluorescent "turn-on" response chemosensor (L) has been designed and synthesized by solid phase peptide synthesis (SPPS). As designed, L can detect Zn²⁺ ions with specifically and sensitively based on photo-induced electron transfer (PET) mechanism in 100% aqueous solutions, and other metal ions do not interfere with Zn²⁺ ions recognition. The stoichiometric ratio of L with Zn²⁺ ions was 2:1, which matches with fluorescence titration and Job-plot assay. In addition, the reversibility and circularly process of the detection of L was confirmed by adding bonding agent Na₂EDTA. Moreover, L exhibits excellent biocompatibility and low biotoxicity with the limit of detection (LOD) for Zn²⁺ about 18 nM, and has been successfully utilized for fluorescence imaging of Zn²⁺ ions in living HeLa cells under physiological conditions.

Calorimetric studies of the interactions of metalloenzyme active site mimetics with zinc-binding inhibitors

The binding of drugs to metalloenzymes is an intricate process that involves several interactions, including binding of the drug to the enzyme active site metal, as well as multiple interactions between the drug and the enzyme residues. In order to determine the free energy contribution of Zn(2+) binding by known metalloenzyme inhibitors without the other interactions, valid active site zinc structural mimetics must be formed and binding studies need to be performed in biologically relevant conditions. The potential of each of five ligands to form a structural mimetic with Zn(2+) was investigated in buffer using Isothermal Titration Calorimetry (ITC). All five ligands formed strong 1 : 1 (ligand : Zn(2+)) binary complexes. The complexes were used in further ITC experiments to study their interaction with 8-hydroxyquinoline (8-HQ) and/or acetohydroxamic acid (AHA), two bidentate anionic zinc-chelating enzyme inhibitors. It was found that tetradentate ligands were not suitable for creating zinc structural mimetics for inhibitor binding in solution due to insufficient coordination sites remaining on Zn(2+). A stable binary complex, [Zn(BPA)](2+), which was formed by a tridentate ligand, bis(2-pyridylmethyl)amine (BPA), was found to bind one AHA in buffer or a methanol : buffer mixture (60 : 40 by volume) at pH 7.25 or one 8-HQ in the methanol : buffer mixture at pH 6.80, making it an effective structural mimetic for the active site of zinc metalloenzymes. These results are consistent with the observation that metalloenzyme active site zinc ions have three residues coordinated to them, leaving one or two sites open for inhibitors to bind. Our findings indicate that Zn(BPA)X2 can be used as an active site structural mimetic for zinc metalloenzymes for estimating the free energy contribution of zinc binding to the overall inhibitor active site interactions. Such use will help aid in the rational design of inhibitors to a variety of zinc metalloenzymes.

A novel fluorescent chemosensor based on tetra-peptides for detecting zinc ions in aqueous solutions and live cells

A novel fluorescent chemosensor (HL) based on tetra-peptides conjugated with dansyl groups has been designed and synthesized, which is a promising analytical tool for detecting Zn²⁺ in aqueous solutions and live cells.

Highly selective ratiometric peptide-based chemosensors for zinc ions and applications in living cell imaging: a study for reasonable structure design

The relationship between the structure and activity for the fluorescent sensing of zinc ions with H₂L peptides has been studied experimentally and computationally.

A peptide-based fluorescent chemosensor for measuring cadmium ions in aqueous solutions and live cells

A novel peptide fluorescent chemosensor (H2L) with a lysine backbone and both -NH2 sites conjugated with cysteine and dansyl groups has been designed and synthesized by solid phase peptide synthesis with Fmoc chemistry. This chemosensor is a promising analytical tool for detecting Cd(2+) based on the photo-induced electron transfer (PET) effect by turn-on response in 100% aqueous solutions. As designed, H2L exhibits excellent cell permeation and low biotoxicity as well as displaying relatively high selectivity and sensitivity. The chemosensor penetrated live HeLa cells and detected intracellular Cd(2+) by turn-on response. The binding stoichiometry and affinity, interference test, pH sensitivity, fluorescence quantum yield, quantum mechanical calculations, lifetimes, and cytotoxicity of the chemosensor H2L to Cd(2+) were also investigated. Moreover, H2L exhibits low biotoxicity with a limit of detection (LOD) for Cd(2+) of about 52 nM, implying that H2L can be used as a highly selective and sensitive peptide fluorescent chemosensor in biological systems.