Versatility of Two Diimidazole Building Blocks in Coordination-Driven Self-Assembly

Orientational Self-Sorting in Octahedral Palladium Cages: Scope and Limitations of the "cis Rule"

Octahedral coordination cages of the general formula [Pd6L12](BF4)12 were obtained by combining [Pd(CH3CN)4](BF4)2 with heteroditopic N-donor ligands. Four different ligands were employed. These ligands have 3-pyridyl donor groups at one end and 4-pyridyl, imidazolyl, or triazolyl donor groups at the other end. According to a geometric analysis, cages with a cis configuration at the six metal centers should be preferred ("cis rule"). This prediction was corroborated by spectroscopic data and crystallographic analyses. Limitations of the "cis rule" were also encountered, and possible explanations are discussed.

Pathway selection in the self-assembly of Rh4L4 coordination squares under kinetic control

Pathway selection principles in reversible reaction networks such as molecular self-assembly have not been established yet, because achieving kinetic control in reversible reaction networks is more complicated than in irreversible ones. In this study, we discovered that coordination squares consisting of cis-protected dinuclear rhodium(II) corner complexes and linear ditopic ligands are assembled under kinetic control, perfectly preventing the corresponding triangles, by modulating their energy landscapes with a weak monotopic carboxylate ligand (2,6-dichlorobenzoate: dcb-) as the leaving ligand. Experimental and numerical approaches revealed the self-assembly pathway where the cyclization step to form the triangular complex is blocked by dcb-. It was also found that one of the molecular squares assembled into a dimeric structure owing to the solvophobic effect, which was characterized by nuclear magnetic resonance spectroscopy and single-crystal X-ray analysis.

Shifting the Triangle-Square Equilibrium of Self-Assembled Metallocycles by Guest Binding with Enhanced Photosensitization

Shifting a triangle-square equilibrium in one direction is an important problem in supramolecular self-assembly. Reaction of a benzothiadiazole-based diimidazole donor with a cis-Pt(II) acceptor yielded an equilibrium mixture of a triangle ([C₁₈H₂₄N₁₀O₆S₁Pt₁]₃≡ PtMC^T) and a square ([C₁₈H₂₄N₁₀O₆S₁Pt₁]₄≡ PtMC^S). We report here the shifting of such equilibrium toward a triangle using a guest (pyrene aldehyde, G1). While both benzothiadiazole and pyrene aldehyde can form reactive oxygen species (ROS) in organic solvents, their therapeutic use in water is restricted due to aqueous insolubility. The enhanced water solubility of the benzothiadiazole unit and G1 by macrocycle formation and host-guest complexation, respectively, enabled enhanced ROS generation by the host-guest complex (G1' ⊂ PtMC^T) in water (G1' = hydrated form of G1). The guest-encapsulated metallacycle (G1' ⊂ PtMC^T) has shown synergistic antibacterial activity compared to the mixture of macrocycles upon white-light irradiation due to enhanced ROS generation. The mechanism for such enhanced activity was established by measuring the oxidative stress and relative internalization of PtMCs and G1' ⊂ PtMC^T.

Molecular Cavity for Catalysis and Formation of Metal Nanoparticles for Use in Catalysis

The employment of weak intermolecular interactions in supramolecular chemistry offers an alternative approach to project artificial chemical environments like the active sites of enzymes. Discrete molecular architectures with defined shapes and geometries have become a revolutionary field of research in recent years because of their intrinsic porosity and ease of synthesis using dynamic non-covalent/covalent interactions. Several porous molecular cages have been constructed from simple building blocks by self-assembly, which undergoes many self-correction processes to form the final architecture. These supramolecular systems have been developed to demonstrate numerous applications, such as guest stabilization, drug delivery, catalysis, smart materials, and many other related fields. In this respect, catalysis in confined nanospaces using such supramolecular cages has seen significant growth over the years. These porous discrete cages contain suitable apertures for easy intake of substrates and smooth release of products to exhibit exceptional catalytic efficacy. This review highlights recent advancements in catalytic activity influenced by the nanocavities of hydrogen-bonded cages, metal-ligand coordination cages, and dynamic or reversible covalently bonded organic cages in different solvent media. Synthetic strategies for these three types of supramolecular systems are discussed briefly and follow similar and simplistic approaches manifested by simple starting materials and benign conditions. These examples demonstrate the progress of various functionalized molecular cages for specific chemical transformations in aqueous and nonaqueous media. Finally, we discuss the enduring challenges related to porous cage compounds that need to be overcome for further developments in this field of work.

Exciton Coupling in Redox-Active Salen based Self-Assembled Metallacycles

The incorporation of a redox-active nickel salen complex into supramolecular structures was explored via coordination-driven self-assembly with homobimetallic ruthenium complexes (bridged by oxalato or 5,8-dihydroxy-1,4-naphthoquinato ligands). The self-assembly resulted in the formation of a discrete rectangle using the oxalato complex and either a rectangle or a catenane employing the larger naphthoquinonato complex. The formation of the interlocked self-assembly was determined to be solvent and concentration dependent. The electronic structure and stability of the oxidized metallacycles was probed using electrochemical experiments, UV-Vis-NIR absorption, EPR spectroscopy and DFT calculations, confirming ligand radical formation. Exciton coupling of the intense near-infrared (NIR) ligand radical intervalence charge transfer (IVCT) bands provided further confirmation of the geometric and electronic structures in solution.

Construction of Entropically Favored Supramolecular Metal-Ligand Trimeric Assemblies Supported by Flexible Pyridylaminophosphorus(V) Scaffolds

The self-assembly reactions of tetratopic metal acceptors with the flexible bidentate ligands are known to yield self-assembled molecular squares of the type [M₄L₈], triangles of composition [M₃L₆], or a mixture of these two. In this work, we demonstrate the preferential formation of a trimeric cage assembly of the formula [Pd₃(L¹)₆·(BF₄)₆] (1a) over the tetrameric cage [Pd₄(L¹)₈·(BF₄)₈] (1b) by employing a flexible dipodal phosphoramide ligand, [PhPO(NH(3-Py))₂] (L¹; 3-Py = 3-aminopyridine), in a reaction with [Pd(CH₃CN)₄·(BF₄)₂]. The entropically favored trimeric self-assembly of 1a is the predominant species in the solution [dimethyl sulfoxide (DMSO)-d₆] at room temperature. In fact, at higher temperatures, 1a was found to be the only product, as observed from the disappearance of the peak due to 1b in the ³¹P NMR spectrum. However, in a 1:1 mixture of acetonitrile (MeCN)-d₃ and DMSO-d₆, the tetrameric species 1b is the preferred species, as revealed by the ³¹P NMR and electrospray ionization mass spectral analyses. The structure of the molecular trimer 1a has been established in the solid state by using single-crystal X-ray diffraction analysis. Interestingly, treatment of an another flexible ligand, [MePO(NH(3-Py))₂] (L²), with the same Pd(II) acceptor resulted in exclusive formation of the trimeric cage [Pd₃(L²)₆·(BF₄)₆] (2).

Integrative Assembly of Heteroleptic Tetrahedra Controlled by Backbone Steric Bulk

A bent fluorenone-based dipyridyl ligand LA reacts with PdII cations to a solvent-dependent dynamic library of [PdnL2n] assemblies, constituted by a [Pd3LA6] ring and a [Pd4LA8] tetrahedron as major components, and a [Pd6LA12] octahedron as minor component. Introduction of backbone steric hindrance in ligand LB allows exclusive formation of the [Pd6LB12] octahedron. Combining equimolar amounts of both ligands results in integrative self-sorting to give an unprecedented [Pd4LA4LB4] heteroleptic tetrahedron. Key to the non-statistical assembly outcome is exploiting the structural peculiarity of the [Pd4L8] tetrahedral topology, where the four lean ligands occupy two doubly bridged edges and the bulky ligands span the four remaining, singly bridged edges. Hence, the system finds a compromise between the entropic drive to form an assembly smaller than the octahedron and the enthalpic prohibition of pairing two bulky ligands on the same edge of the triangular ring. The emission of luminescent LA is maintained in both homoleptic [Pd3LA6] and heteroleptic [Pd4LA4LB4].

A square-shaped complex with an electron-acceptor ligand: unique cubic crystal symmetry and similarity to the inorganic mineral katoite

We successfully obtained a Pt square complex having an electron-accepting ligand, which shows a strong similarity to the high-pressure phase of the natural mineral katoite in the solid state.

A new ZnII metallocryptand with unprecedented diflexure helix induced by V-shaped diimidazole building blocks

Taking advantage of V-shaped ligands, a Zn^II metallocryptand, namely {[Zn₂(didp)₂(m-bdc)₂]}_n, (1) [didp = 2,8-di(1H-imidazol-1-yl)-dibenzothiophene and m-H₂bdc = isophthalic acid], has been hydrothermally synthesized. Single-crystal X-ray diffraction analysis reveals a 26-membered butterfly-type metallomacrocycle [Zn₂(didp)₂]. One m-bdc^2- ligand bridges [Zn₂(didp)₂] units to form a laterally non-symmetric [Zn₂(didp)₂(m-bdc)] metallocryptand with an exo-exo conformation. Another crystallographically independent m-bdc^2- functions as a secondary synthon to bridge discrete metallocryptands into a 1D zigzag chain architecture. Undoubtedly, the choice of two matched ligands in this work is crucial for metallocryptand construction and structure expansion. Interestingly, a rare helical chain with two flexures in one single L and/or R strand is observed. Another important feature is the C-O...π interactions, by which the dimensionality extension of (1) can be induced. Fluorescence measurements and density functional theory (DFT) calculations illustrate that the emission of (1) can probably be attributed to ligand-to-ligand charge transfer (LLCT).

Coordination-driven assembly of a supramolecular square and oxidation to a tetra-ligand radical species

The design and synthesis of a supramolecular square was achieved by coordination-driven assembly of redox-active nickel(ii) salen linkers and (ethylenediamine)palladium(ii) nodes. The tetrameric geometry of the supramolecular structure was confirmed via MS, NMR, and electrochemical experiments. While oxidation of the monomeric metalloligand Schiff-base affords a Ni(iii) species, oxidation of the coordination-driven assembly results in ligand radical formation.

A triangular palladium(II) supramolecular coordination complex based on 1,4-bis(1H-imidazol-1-yl)benzene and (2,2'-bipyridyl)palladium(II) nitrate: synthesis and crystal structure

The self-assembly of ditopic bis(1H-imidazol-1-yl)benzene ligands (L^H) and the complex (2,2'-bipyridyl-κ²N,N')bis(nitrato-κO)palladium(II) affords the supramolecular coordination complex tris[μ-bis(1H-imidazol-1-yl)benzene-κ²N³:N^3']-triangulo-tris[(2,2'-bipyridyl-κ²N,N')palladium(II)] hexakis(hexafluoridophosphate) acetonitrile heptasolvate, [Pd₃(C₁₀H₈N₂)₃(C₁₂H₁₀N₄)₃](PF₆)₆·7CH₃CN, 2. The structure of 2 was characterized in acetonitrile-d₃ by ¹H/¹³C NMR spectroscopy and a DOSY experiment. The trimeric nature of supramolecular coordination complex 2 in solution was ascertained by cold spray ionization mass spectrometry (CSI-MS) and confirmed in the solid state by X-ray structure analysis. The asymmetric unit of 2 comprises the trimetallic Pd complex, six PF₆^- counter-ions and seven acetonitrile solvent molecules. Moreover, there is one cavity within the unit cell which could contain diethyl ether solvent molecules, as suggested by the crystallization process. The packing is stabilized by weak inter- and intramolecular C-H...N and C-H...F interactions. Interestingly, the crystal structure displays two distinct conformations for the L^H ligand (i.e. syn and anti), with an all-syn-[Pd] coordination mode. This result is in contrast to the solution behaviour, where multiple structures with syn/anti-L^H and syn/anti-[Pd] are a priori possible and expected to be in rapid equilibrium.

Molecular Lemniscates from Organic-Metal Terpyridine-Based Self-Assembly and Host-Guest Recognition

The intricate discrete supramolecular architectures via two or more noncovalent interactions are very attractive for chemists. In this paper, a series of homomeric metallo-supramolecular lemniscates were prepared in nearly quantitative yields by assembling either dialkylammonium salt- or benzo-21-crown-7 (B21C7)-containing terpyridyl metallo-organic ligands with Zn²⁺. Furthermore, the heteromeric analogue could be obtained through two ways: (1) the cooperative interaction of coordination-driven self-assembly and host-guest recognition and (2) the transformation from homodimers to heterodimers driven by host-guest interaction. These supramolecules were characterized by nuclear magnetic resonance (NMR), diffusion-ordered NMR spectroscopy, electrospray ionization mass spectrometry, and two-dimensional (2D) ion-mobility mass spectrometry.

A Rotaxane-like Cage-in-Ring Structural Motif for a Metallosupramolecular Pd6 L12 Aggregate

A BODIPY-based bis(3-pyridyl) ligand undergoes self-assembly upon coordination to tetravalent palladium(II) cations to form a Pd₆ L₁₂ metallosupramolecular assembly with an unprecedented structural motif that resembles a rotaxane-like cage-in-ring arrangement. In this assembly the ligand adopts two different conformations-a C-shaped one to form a Pd₂ L₄ cage which is located in the center of a Pd₄ L₈ ring consisting of ligands in a W-shaped conformation. This assembly is not mechanically interlocked in the sense of catenation but it is stabilized only by attractive π-stacking between the peripheral BODIPY chromophores and the ligands' skeleton as well as attractive van der Waals interactions between the long alkoxy chains. As a result, the co-arrangement of the two components leads to a very efficient space filling. The overall structure can be described as a rotaxane-like assembly with a metallosupramolecular cage forming the axle in a metallosupramolecular ring. This unique structural motif could be characterized via ESI mass spectrometry, NMR spectroscopy, and X-ray crystallography.

Modular Cavities: Induced Fit of Polar and Apolar Guests into Halogen-Based Receptors

Neutral triangular macrocyclic compounds, [PdX₂(4,7-phen)]₃·(DMF)₃·Et₂O (X = Cl, Br; 4,7-phen = 4,7-phenanthroline; DMF = N, N'-dimethylformamide; Et₂O = diethyl ether), were synthesized, and their molecular structures were characterized. Solution-state ¹H NMR results suggested the formation of metal-ligand bonds, and single-crystal X-ray crystallography revealed clear triangular structures. A detailed examination of the structures indicated the formation of two kinds of cavities in the solid state, where a triangular unit works as a halogen-based receptor for polar and apolar solvents through weak hydrogen-bonding and dipole-dipole interaction.

Self-Assembled PdII6 Molecular Spheroids and Their Proton Conduction Property

A series of molecular spheroids (SP1-SP4) was synthesized using pseudolinear bisimidazole and bisbenzimidazole donors in combination with Pd(NO₃)₂ acceptor via coordination-driven self-assembly. They were characterized by NMR and mass spectrometry, and the solid-state structures of SP1 and SP3 were confirmed by X-ray diffraction. Crystal packing revealed the presence of molecular channels with water molecules in the channels as proton source. All the systems showed proton conductivity across a wide range of temperature and relative humidity. Furthermore, the mode of proton conduction in these molecular spheroids was explored by performing a control experiment using 2,4-dinitrophenol molecule, which indicates that the proton conductivity in the present case increases with increasing surface area of these molecular spheroids.

Amide-Functionalized Chalcogen-Bridged Flexible Tetranuclear Rhenacycles: Synthesis, Characterization, Solvent Effect on the Structure, and Guest Binding

The synthesis of flexible rhenium(I)-based amide-functionalized chalcogen-bridged tetranuclear metallacycles of general formula [{(CO)₃Re(μ-ER)₂Re(CO)₃}₂(μ-L)₂] (1-8) was achieved by treating rhenium carbonyl with dialkyl/diaryl chalcogenide (RE-ER; E = S and Se) in the presence of ditopic flexible or semiflexible pyridyl ligand with amide functionality (L = N,N'-bis(4-pyridylcarboxamide)-1,2-ethane (bpce) and N,N'-bis(4-(4-pyridylcarboxamide)phenyl)methane (bpcpm)). Compounds 1-8 were formed by multicomponent self-assembly under one-pot reaction conditions via oxidative addition of dialkyl/diaryl chalcogenide to rhenium carbonyl with pyridyl ligands. The resultant metallacyclophanes were characterized using elemental analyses, infrared, ultraviolet-visible, and NMR spectroscopic techniques. Metallacyclophanes 1-3 and 7 were structurally characterized by single-crystal X-ray diffraction methods. The solvent-induced structural change of flexible tetranuclear metallacyclophane 2 was demonstrated by crystallizing 2 in dichloroethane and dimethylformamide. Molecular recognition capabilities of 2 and 7 were studied with few aromatic compounds containing ethereal linkages.

Quantitative Analysis of the Self-Assembly Process of Hexagonal PtII Macrocyclic Complexes: Effect of the Solvent and the Components

The self-assembly process of three Pt^II -linked hexagonal macrocycles consisting of dinuclear Pt^II complexes and organic ditopic ligands was investigated in polar and less polar solvents by a recently developed approach: quantitative analysis of the self-assembly process (QASAP). In polar CD₃ NO₂ , for all the three macrocycles, an ML₂ complex was the dominant intermediate during self-assembly, as a result of high positive allosteric cooperativity for the ligand exchange on the Pt^II centers of the dinuclear Pt^II complexes. On the other hand, in less polar CD₂ Cl₂ , the self-assembly process was affected by the components. For two of the three macrocycles, the chainlike oligomers that contain fewer metals and ligands than the corresponding macrocycles grew with time and the type of the chainlike intermediates formed correlated with the allostericity of the two binding sites in the organic ditopic ligands. In every case, no long oligomers containing more components than the macrocycles themselves were produced during the self-assembly even though free rotation around single bonds in the chainlike oligomers allows them to adopt various conformations that do not facilitate the cyclization. This result suggests that electrostatic and/or steric factors besides rigidity of the components make the cyclization advantageous not only thermodynamically but also kinetically.

Coordination-driven self-assembly of chiral palladium(ii)-based supramolecular triangle structures

Chiral structures of palladium(ii)-based triangular supramolecular complexes, with achiral corners and edges, have been characterized in solution.

Cross-linked AIE supramolecular polymer gels with multiple stimuli-responsive behaviours constructed by hierarchical self-assembly

Cross-linked AIE supramolecular polymer gels were successfully constructed by hierarchical self-assembly.