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Wen Y, Vechetti IJ, Leng D, Alimov AP, Valentino TR, Zhang XD, McCarthy JJ, Peterson CA. Early transcriptomic signatures and biomarkers of renal damage due to prolonged exposure to embedded metal. Cell Biol Toxicol 2023; 39:2861-2880. [PMID: 37058270 DOI: 10.1007/s10565-023-09806-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 03/24/2023] [Indexed: 04/15/2023]
Abstract
BACKGROUND Prolonged exposure to toxic heavy metals leads to deleterious health outcomes including kidney injury. Metal exposure occurs through both environmental pathways including contamination of drinking water sources and from occupational hazards, including the military-unique risks from battlefield injuries resulting in retained metal fragments from bullets and blast debris. One of the key challenges to mitigate health effects in these scenarios is to detect early insult to target organs, such as the kidney, before irreversible damage occurs. METHODS High-throughput transcriptomics (HTT) has been recently demonstrated to have high sensitivity and specificity as a rapid and cost-effective assay for detecting tissue toxicity. To better understand the molecular signature of early kidney damage, we performed RNA sequencing (RNA-seq) on renal tissue using a rat model of soft tissue-embedded metal exposure. We then performed small RNA-seq analysis on serum samples from the same animals to identify potential miRNA biomarkers of kidney damage. RESULTS We found that metals, especially lead and depleted uranium, induce oxidative damage that mainly cause dysregulated mitochondrial gene expression. Utilizing publicly available single-cell RNA-seq datasets, we demonstrate that deep learning-based cell type decomposition effectively identified cells within the kidney that were affected by metal exposure. By combining random forest feature selection and statistical methods, we further identify miRNA-423 as a promising early systemic marker of kidney injury. CONCLUSION Our data suggest that combining HTT and deep learning is a promising approach for identifying cell injury in kidney tissue. We propose miRNA-423 as a potential serum biomarker for early detection of kidney injury.
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Affiliation(s)
- Yuan Wen
- Department of Physical Therapy, College of Health Sciences, University of Kentucky, Lexington, KY, USA.
- Center for Muscle Biology, University of Kentucky, Lexington, KY, USA.
| | - Ivan J Vechetti
- Department of Nutrition and Health Sciences, College of Education and Human Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Dongliang Leng
- Faculty of Health Sciences, CRDA, University of Macau, Taipa, Macau, China
| | - Alexander P Alimov
- Center for Muscle Biology, University of Kentucky, Lexington, KY, USA
- Department of Physiology, College of Medicine, University of Kentucky, Lexington, KY, USA
| | - Taylor R Valentino
- Department of Medicinal Chemistry, College of Pharmacy, University of Utah, Salt Lake City, UT, USA
| | - Xiaohua D Zhang
- Department of Biostatistics, College of Public Health, University of Kentucky, Lexington, KY, USA
| | - John J McCarthy
- Center for Muscle Biology, University of Kentucky, Lexington, KY, USA
- Department of Physiology, College of Medicine, University of Kentucky, Lexington, KY, USA
| | - Charlotte A Peterson
- Department of Physical Therapy, College of Health Sciences, University of Kentucky, Lexington, KY, USA
- Center for Muscle Biology, University of Kentucky, Lexington, KY, USA
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Lu J, Geng R, Zhang H, Yu Z, Chen T, Zhang B. Concurrent reductive decontamination of chromium (VI) and uranium (VI) in groundwater by Fe(0)-based autotrophic bioprocess. JOURNAL OF HAZARDOUS MATERIALS 2023; 452:131222. [PMID: 36989793 DOI: 10.1016/j.jhazmat.2023.131222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 02/23/2023] [Accepted: 03/14/2023] [Indexed: 05/03/2023]
Abstract
The co-presence of chromium (VI) [Cr(VI)] and uranium (VI) [U(VI)] is widely found in groundwater, imposing severe risks on human health. Although zerovalent iron [Fe(0)] supports superb performance for bioreduction of Cr(VI) and U(VI) individually, the biogeochemical process involving their concurrent removal with Fe(0) as electron donor remains unexplored. In the 6-d batch study, 86.1% ± 0.7% of Cr(VI) was preferentially eliminated, while 78.4% ± 0.5% of U(VI) removal was achieved simultaneously. Efficient removal of Cr(VI) (100%) and U(VI) (51.2% ∼ 100%) was also obtained in a continuous 160-d column experiment. As a result, Cr(VI) and U(VI) were reduced to less mobile Cr(III) and insoluble U(IV), respectively. 16 S rRNA sequencing was performed to investigate the dynamics of microbial community. Delftia, Acinetobacter, Pseudomonas and Desulfomicrobium were the major contributors mediating the bioreduction process. The initial Cr(VI) and hydraulic retention time (HRT) incurred pronounced effects on community diversity, which in turn altered the reactor's performance. The enrichment of Cr(VI) resistance (chrA), U(VI) reduction (dsrA) and Fe(II) oxidation (mtrA) genes were observed by reverse transcription qPCR. Cytochrome c, glutathione and NADH as well as VFAs and gas metabolites also involved in the bioprocess. This study demonstrated a promising approach for removing the combined contaminants of Cr(VI) and U(VI) in groundwater.
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Affiliation(s)
- Jianping Lu
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China
| | - Rongyue Geng
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China
| | - Han Zhang
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China.
| | - Zhen Yu
- Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, PR China
| | - Tao Chen
- School of Environment, South China Normal University, University Town, Guangzhou 510006, PR China.
| | - Baogang Zhang
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China
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Lu J, Zhang B, Geng R, Lian G, Dong H. Independent and synergistic bio-reductions of uranium (VI) driven by zerovalent iron in aquifer. WATER RESEARCH 2023; 233:119778. [PMID: 36871383 DOI: 10.1016/j.watres.2023.119778] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 02/10/2023] [Accepted: 02/19/2023] [Indexed: 06/18/2023]
Abstract
Zerovalent iron [Fe(0)] can donate electron for bioprocess, but microbial uranium (VI) [U(VI)] reduction driven by Fe(0) is still poorly understood. In this study, Fe(0) supported U(VI) bio-reduction was steadily achieved in the 160-d continuous-flow biological column. The maximum removal efficiency and capacity of U(VI) were 100% and 46.4 ± 0.52 g/(m3·d) respectively, and the longevity of Fe(0) increased by 3.09 times. U(VI) was reduced to solid UO2, while Fe(0) was finally oxidized to Fe(III). Autotrophic Thiobacillus achieved U(VI) reduction coupled to Fe(0) oxidation, verified by pure culture. H2 produced from Fe(0) corrosion was consumed by autotrophic Clostridium for U(VI) reduction. The detected residual organic intermediates were biosynthesized with energy released from Fe(0) oxidation and utilized by heterotrophic Desulfomicrobium, Bacillus and Pseudomonas to reduce U(VI). Metagenomic analysis found the upregulated genes for U(VI) reduction (e.g., dsrA and dsrB) and Fe(II) oxidation (e.g., CYC1 and mtrA). These functional genes were also transcriptionally expressed. Cytochrome c and glutathione responsible for electron transfer also contributed to U(VI) reduction. This study reveals the independent and synergistic pathways for Fe(0)-dependent U(VI) bio-reduction, providing promising remediation strategy for U(VI)-polluted aquifers.
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Affiliation(s)
- Jianping Lu
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China
| | - Baogang Zhang
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China.
| | - Rongyue Geng
- MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, School of Water Resources and Environment, China University of Geosciences Beijing, Beijing 100083, PR China
| | - Guoxi Lian
- School of Environment, Beijing Normal University, Beijing 100875, PR China; The Fourth Research and Design Engineering Institute of China National Nuclear Corporation, Shijiazhuang 050021, PR China
| | - Hailiang Dong
- Center for Geomicrobiology and Biogeochemistry Research, State Key Laboratory of Biogeology and Environmental Geology, School of Earth Science and Resources, China University of Geosciences Beijing, Beijing 100083, PR China
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Aiello D, Carnamucio F, Cordaro M, Foti C, Napoli A, Giuffrè O. Ca 2+ Complexation With Relevant Bioligands in Aqueous Solution: A Speciation Study With Implications for Biological Fluids. Front Chem 2021; 9:640219. [PMID: 33718329 PMCID: PMC7953420 DOI: 10.3389/fchem.2021.640219] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 01/11/2021] [Indexed: 11/13/2022] Open
Abstract
A speciation study on the interaction between Ca2+ and ligands of biological interest in aqueous solution is reported. The ligands under study are l-cysteine (Cys), d-penicillamine (PSH), reduced glutathione (GSH), and oxidized glutathione (GSSG). From the elaboration of the potentiometric experimental data the most likely speciation patterns obtained are characterized by only protonated species with a 1:1 metal to ligand ratio. In detail, two species, CaLH2 and CaLH, for systems containing Cys, PSH, and GSH, and five species, CaLH5, CaLH4, CaLH3, CaLH2, and CaLH, for system containing GSSG, were observed. The potentiometric titrations were performed at different temperatures (15 ≤ t/°C ≤ 37, at I = 0.15 mol L-1). The enthalpy and entropy change values were calculated for all systems, and the dependence of the formation constants of the complex species on the temperature was evaluated. 1H NMR spectroscopy, MALDI mass spectrometry, and tandem mass spectrometry (MS/MS) investigations on Ca2+-ligand solutions were also employed, confirming the interactions and underlining characteristic complexing behaviors of Cys, PSH, GSH, and GSSG toward Ca2+. The results of the analysis of 1H NMR experimental data are in full agreement with potentiometric ones in terms of speciation models and stability constants of the species. MALDI mass spectrometry and tandem mass spectrometry (MS/MS) analyses confirm the formation of Ca2+-L complex species and elucidate the mechanism of interaction. On the basis of speciation models, simulations of species formation under conditions of some biological fluids were reported. The sequestering ability of Cys, PSH, GSH, and GSSG toward Ca2+ was evaluated under different conditions of pH and temperature and under physiological condition.
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Affiliation(s)
- Donatella Aiello
- Dipartimento di Chimica e Tecnologie Chimiche, Università Della Calabria, Arcavacata di Rende, Italy
| | - Federica Carnamucio
- Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche Ed Ambientali, Università di Messina, Messina, Italy
| | - Massimiliano Cordaro
- Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche Ed Ambientali, Università di Messina, Messina, Italy
| | - Claudia Foti
- Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche Ed Ambientali, Università di Messina, Messina, Italy
| | - Anna Napoli
- Dipartimento di Chimica e Tecnologie Chimiche, Università Della Calabria, Arcavacata di Rende, Italy
| | - Ottavia Giuffrè
- Dipartimento di Scienze Chimiche, Biologiche, Farmaceutiche Ed Ambientali, Università di Messina, Messina, Italy
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