Nitro-Substituted Ruthenium(II) Complex: A New Strategy for a G-Quadruplex DNA Fluorescent Probe

Harnessing single fluorescent probe to image deoxyribonucleic acid and ribonucleic acid in cells

The roles of deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) in cells are closely related. However, the absence of molecular tools for simultaneous imaging of the two nucleic acids has prevented scientists from elucidating the regulatory mechanisms of nucleic acid interaction. The nucleic acid probes developed in recent years have ignored the regulatory relationship between DNA and RNA. Simultaneously imaging RNA and DNA in cells through a single small-molecule fluorescent probe is important. In this study, we propose a strategy for developing fluorescent probes localized to DNA and RNA to investigate their detection and imaging characteristics. The novel probe Bptp-RD has been successfully used for DNA and RNA imaging in cells. We investigated the detection and imaging characteristics of this nucleic acid probe and discovered the following: 1) the differences in the detection results of this nucleic acid probe for DNA and RNA come from the structural differences of the nucleic acids rather than chemical composition differences; 2) through using small-molecule probes to image a nucleic acid in cells, another nucleic acid can be visualized by reducing the fluorescence signal caused by DNA or RNA; 3) the order of response of the small-molecule fluorescent probe with intercalation and binding mechanisms to the type of nucleic acid structure is single chain, double chain, and ring. This work will help improve the understanding of RNA and DNA probes, and the novel probe has high potential to explore the interaction between RNA and DNA in cells.

Synthesis and Theoretical and Photophysical Study on a Series of Neutral Ruthenium(II) Complexes with Donor-Metal-Accepter Configuration

In order to construct a new type of ruthenium(II) terpyridine complexes with activated triplet metal-centered (³MC) states, as well as stabilized triplet metal-to-ligand charge transfer (³MLCT) states, conducive to fine emissive performances, Ru-1, Ru-2, Ru-3, and Ru-4 were synthesized. Compared with the [Ru(terpyridine)₂]²⁺ prototype (0.25 ns), this series of ruthenium(II) terpyridine complexes exhibit lengthened excited state lifetime (43.3 ns for Ru-1, 52.7 ns for Ru-2, 43.6 ns for Ru-3, and 53.4 ns for Ru-4). Interfragment charge transfer analysis illustrates the electron transfer direction of the four complexes, manifesting their intramolecular charge transfer characteristic. When excited, their lowest-lying triplet states are assigned as ³MLCT based on spin-density surface distribution. The singlet excited states and ³MLCT states were thoroughly studied by UV-visual absorption and nanosecond time-resolved transient absorption spectra, respectively. Photoluminescence spectra revealed their weak broadband near-infrared emission at room temperature and red phosphorescence at 77 K. The low molecular weight and the good thermal stability make Ru-1 and Ru-2 suitable for vaporization coating, while the fine solubility in common organic solvents makes Ru-3 and Ru-4 suitable for solution processing. Furthermore, the intrinsic electroneutrality and favorable energy levels endow them with new potential to be applied in the optoelectronic field.

Ruthenium(II) Polypyridyl Complexes and Their Use as Probes and Photoreactive Agents for G-quadruplexes Labelling

Due to their optical and electrochemical properties, ruthenium(II) polypyridyl complexes have been used in a wide array of applications. Since the discovery of the light-switch ON effect of [Ru(bpy)2dppz]2+ when interacting with DNA, the design of new Ru(II) complexes as light-up probes for specific regions of DNA has been intensively explored. Amongst them, G-quadruplexes (G4s) are of particular interest. These structures formed by guanine-rich parts of DNA and RNA may be associated with a wide range of biological events. However, locating them and understanding their implications in biological pathways has proven challenging. Elegant approaches to tackle this challenge relies on the use of photoprobes capable of marking, reversibly or irreversibly, these G4s. Indeed, Ru(II) complexes containing ancillary π-deficient TAP ligands can create a covalently linked adduct with G4s after a photoinduced electron transfer from a guanine residue to the excited complex. Through careful design of the ligands, high selectivity of interaction with G4 structures can be achieved. This allows the creation of specific Ru(II) light-up probes and photoreactive agents for G4 labelling, which is at the core of this review composed of an introduction dedicated to a brief description of G-quadruplex structures and two main sections. The first one will provide a general picture of ligands and metal complexes interacting with G4s. The second one will focus on an exhaustive and comprehensive overview of the interactions and (photo)reactions of Ru(II) complexes with G4s.

Photo-induced mitochondrial DNA damage and NADH depletion by -NO2 modified Ru(II) complexes

Two mitochondria-localized Ru(ii) complexes with photo-labile ligands were reported to exert one- and two-photon activatable anticancer activity through a dual-function mechanism, i.e. mitochondrial DNA covalent binding after photo-induced ligand dissociation and photo-catalyzed NADH depletion, thus displaying good activity towards cisplatin-resistant cancer cells under both normoxic and hypoxic conditions.

A Ruthenium(II) complex-based probe for colorimetric and luminescent detection and imaging of hydrogen sulfide in living cells and organisms

The development of reliable bioanalytical probes for sensitive and specific detection of hydrogen sulfide (H₂S) plays important role for better understanding the roles of this biomolecule in living cells and organisms. Taking advantages of unique photophysical properties of ruthenium(II) (Ru(II)) complex, this work presents the development of a responsive Ru(II) complex probe, Ru-PNBD, for colorimetric and luminescent analysis of H₂S in living cells and organisms. In aqueous solution, Ru-PNBD is yellow color and non-luminescent because of the photoinduced electron transfer (PET) process from Ru(II) complex luminophore to NBD moiety. The H₂S-triggered specific nucleophilic substitution reaction with Ru-PNBD cleaves the NBD moiety to form pink NBD-SH and highly luminescent Ru-PH. The color of the solution thus changes from yellow to pink for colorimetric analysis and the emission intensity is about 65-fold increased for luminescent analysis. Ru-PNBD has high sensitivity and selectivity for H₂S detection, low cytotoxicity and good permeability to cell membrane, which allow the application of this probe for H₂S imaging in living cells, Daphnia magna, and larval zebrafish. Collectively, this work provides a useful tool for H₂S analysis and expands the scope of transition metal complex probes.