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De Pascale S, Troise AD, Petriccione M, Nunziata A, Cice D, Magri A, Salzano AM, Scaloni A. Investigating phenotypic relationships in persimmon accessions through integrated proteomic and metabolomic analysis of corresponding fruits. FRONTIERS IN PLANT SCIENCE 2023; 14:1093074. [PMID: 36794209 PMCID: PMC9923171 DOI: 10.3389/fpls.2023.1093074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 01/03/2023] [Indexed: 06/18/2023]
Abstract
Together with phenological and genomic approaches, gel-based and label-free proteomic as well metabolomic procedures were separately applied to plants to highlight differences between ecotypes, to estimate genetic variability within/between organism populations, or to characterize specific mutants/genetically modified lines at metabolic level. To investigate the possible use of tandem mass tag (TMT)-based quantitative proteomics in the above-mentioned contexts and based on the absence of combined proteo-metabolomic studies on Diospyros kaki cultivars, we here applied integrated proteomic and metabolomic approaches to fruits from Italian persimmon ecotypes with the aim to characterize plant phenotypic diversity at molecular level. We identified 2255 proteins in fruits, assigning 102 differentially represented components between cultivars, including some related to pomological, nutritional and allergenic characteristics. Thirty-three polyphenols were also identified and quantified, which belong to hydroxybenzoic acid, flavanol, hydroxycinnamic acid, flavonol, flavanone and dihydrochalcone sub-classes. Heat-map representation of quantitative proteomic and metabolomic results highlighted compound representation differences in various accessions, whose elaboration through Euclidean distance functions and other linkage methods defined dendrograms establishing phenotypic relationships between cultivars. Principal component analysis of proteomic and metabolomic data provided clear information on phenotypic differences/similarities between persimmon accessions. Coherent cultivar association results were observed between proteomic and metabolomic data, emphasizing the utility of integrating combined omic approaches to identify and validate phenotypic relationships between ecotypes, and to estimate corresponding variability and distance. Accordingly, this study describes an original, combined approach to outline phenotypic signatures in persimmon cultivars, which may be used for a further characterization of other ecotypes of the same species and an improved description of nutritional characteristics of corresponding fruits.
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Affiliation(s)
- Sabrina De Pascale
- Proteomics, Metabolomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, Portici, Italy
| | - Antonio Dario Troise
- Proteomics, Metabolomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, Portici, Italy
| | - Milena Petriccione
- Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Research Centre for Olive, Fruit and Citrus Crops, Caserta, Italy
| | - Angelina Nunziata
- Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Research Centre for Olive, Fruit and Citrus Crops, Caserta, Italy
| | - Danilo Cice
- Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Research Centre for Olive, Fruit and Citrus Crops, Caserta, Italy
| | - Anna Magri
- Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Research Centre for Olive, Fruit and Citrus Crops, Caserta, Italy
- Department of Environmental Biological and Pharmaceutical Sciences and Technologies, University of Campania “Luigi Vanvitelli”, Caserta, Italy
| | - Anna Maria Salzano
- Proteomics, Metabolomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, Portici, Italy
| | - Andrea Scaloni
- Proteomics, Metabolomics and Mass Spectrometry Laboratory, ISPAAM, National Research Council, Portici, Italy
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Honaiser TC, Rossi GB, de Moura Rocha M, Arisi ACM. Comparison of grain protein profiles of Brazilian cowpea (Vigna unguiculata) cultivars based on principal component analysis. FOOD PRODUCTION, PROCESSING AND NUTRITION 2022. [DOI: 10.1186/s43014-022-00095-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
AbstractThis study aims to compare the grain protein profile of four Brazilian cowpea cultivars (BRS Aracê, BRS Itaim, BRS Pajeú, and BRS Xiquexique) by two-dimensional electrophoresis (2-DE) and principal component analysis (PCA). 2-DE efficiently separate cowpea protein profiles, showing high homogeneity among the four cultivars. In addition, the principal component analysis indicated that there is a difference in abundance of proteins among the cultivars. The cultivars BRS Aracê and BRS Xiquexique, both biofortified in iron and zinc, were separated from the cultivars BRS Itaim and BRS Pajeú. These results demonstrate that protein profiles can be used to discriminate cowpea varieties.
Graphical Abstract
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Rossi GB, Seraglio SKT, Honaiser TC, Toaldo IM, Costa ACDO, Faria JCD, Arisi ACM. Protein profile and antioxidant capacity of processed seeds from two common bean (
Phaseolus vulgaris
L.) cultivars. Int J Food Sci Technol 2022. [DOI: 10.1111/ijfs.15537] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Gabriela Barbosa Rossi
- Food Science and Technology Department Federal University of Santa Catarina CAL CCA UFSC Florianópolis SC Brazil
| | | | - Tuany Camila Honaiser
- Food Science and Technology Department Federal University of Santa Catarina CAL CCA UFSC Florianópolis SC Brazil
| | - Isabela Maia Toaldo
- Food Science and Technology Department Federal University of Santa Catarina CAL CCA UFSC Florianópolis SC Brazil
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Wang Y, He S, Zhou F, Sun H, Cao X, Ye Y, Li J. Detection of Lectin Protein Allergen of Kidney Beans ( Phaseolus vulgaris L.) and Desensitization Food Processing Technology. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:14723-14741. [PMID: 34251800 DOI: 10.1021/acs.jafc.1c02801] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
With the increase of food allergy events related to not properly cooked kidney beans (Phaseolus vulgaris L.), more and more researchers are paying attention to the sensitization potential of lectin, one of the major storage and defensive proteins with the specific carbohydrate-binding activity. The immunoglobulin E (IgE), non-IgE, and mixed allergic reactions induced by the lectins were inducted in the current paper, and the detection methods of kidney bean lectin, including the purification strategies, hemagglutination activity, specific polysaccharide or glycoprotein interactions, antibody combinations, mass spectrometry methods, and allergomics strategies, were summarized, while various food processing aspects, such as the physical thermal processing, physical non-thermal processing, chemical modifications, and biological treatments, were reviewed in the potential of sensitization reduction. It might be the first comprehensive review on lectin allergen detection from kidney bean and the desensitization strategy in food processing and will provide a basis for food safety control.
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Affiliation(s)
- Yongfei Wang
- Engineering Research Center of Bio-process of Ministry of Education, School of Food and Biological Engineering, Hefei University of Technology, Hefei, Anhui 230009, People's Republic of China
| | - Shudong He
- Engineering Research Center of Bio-process of Ministry of Education, School of Food and Biological Engineering, Hefei University of Technology, Hefei, Anhui 230009, People's Republic of China
| | - Fanlin Zhou
- Engineering Research Center of Bio-process of Ministry of Education, School of Food and Biological Engineering, Hefei University of Technology, Hefei, Anhui 230009, People's Republic of China
| | - Hanju Sun
- Engineering Research Center of Bio-process of Ministry of Education, School of Food and Biological Engineering, Hefei University of Technology, Hefei, Anhui 230009, People's Republic of China
| | - Xiaodong Cao
- Engineering Research Center of Bio-process of Ministry of Education, School of Food and Biological Engineering, Hefei University of Technology, Hefei, Anhui 230009, People's Republic of China
| | - Yongkang Ye
- Engineering Research Center of Bio-process of Ministry of Education, School of Food and Biological Engineering, Hefei University of Technology, Hefei, Anhui 230009, People's Republic of China
| | - Jing Li
- College of Biological and Environmental Engineering, Hefei University, Hefei, Anhui 230601, People's Republic of China
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5
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Proteomic and physicochemical characteristics: The search for a quality profile of beans (Phaseolus vulgaris L.) during long-term storage. Lebensm Wiss Technol 2020. [DOI: 10.1016/j.lwt.2020.110057] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Sinha A, Haider T, Narula K, Ghosh S, Chakraborty N, Chakraborty S. Integrated Seed Proteome and Phosphoproteome Analyses Reveal Interplay of Nutrient Dynamics, Carbon–Nitrogen Partitioning, and Oxidative Signaling in Chickpea. Proteomics 2020; 20:e1900267. [DOI: 10.1002/pmic.201900267] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 02/03/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Arunima Sinha
- National Institute of Plant Genome Research Aruna Asaf Ali Marg New Delhi 110067 India
| | - Toshiba Haider
- National Institute of Plant Genome Research Aruna Asaf Ali Marg New Delhi 110067 India
| | - Kanika Narula
- National Institute of Plant Genome Research Aruna Asaf Ali Marg New Delhi 110067 India
| | - Sudip Ghosh
- National Institute of Plant Genome Research Aruna Asaf Ali Marg New Delhi 110067 India
| | - Niranjan Chakraborty
- National Institute of Plant Genome Research Aruna Asaf Ali Marg New Delhi 110067 India
| | - Subhra Chakraborty
- National Institute of Plant Genome Research Aruna Asaf Ali Marg New Delhi 110067 India
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Riahi J, Amri B, Chibani F, Azri W, Mejri S, Bennani L, Zoghlami N, Matros A, Mock HP, Ghorbel A, Jardak R. Comparative analyses of albumin/globulin grain proteome fraction in differentially salt-tolerant Tunisian barley landraces reveals genotype-specific and defined abundant proteins. PLANT BIOLOGY (STUTTGART, GERMANY) 2019; 21:652-661. [PMID: 30672087 DOI: 10.1111/plb.12965] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Accepted: 01/18/2019] [Indexed: 06/09/2023]
Abstract
Salinity is one of the major abiotic stresses threatening crop production and yield worldwide. Breeding programmes are therefore needed to improve yield under cultivation in soil. Traits from locally adopted landraces provide a resource to assist breeding of novel elite genotypes. Here, we examine differentially expressed proteins by performing comparative proteomic profiling of the albumin/globulin grain fraction of Tunisian barley genotype landraces with contrasting salinity tolerance. Tunisian barley Boulifa (B, tolerant) and Testour (T, sensitive) mature grains were assessed in 2-DE profiles. Differentially expressed spots, with an abundance enhanced 1.5-fold in the grain, were subjected to MALDI TOF/TOF MS for identification. Distinctiveness between tolerant and sensitive genotypes was proved in the albumin/globulin fraction using PCA; 64 spots showed significant differential abundance. Increased accumulation of 40 spots was confirmed in Boulifa with, interestingly, four genotype-specific spots. Two of these four spots were sHSP. Proteins with highest abundance were serpin Z7, 16.9 KDa Class I HSP and phosphogluconolactonase 2. Proteins such as expansin, kiwellin, kinesin and succinyl-CoA ligase were identified for the first time in barley grain. Moreover, ß-amylase, LEA family and others were identified as abundant in Boulifa. On the other hand, proteins more accumulated in Testour are implicated mainly in ROS scavenging and protease inhibition. Our results clearly indicate proteomic contrast between the two selected genotypes. With identification of specific HSP, high abundant stress-protective and other defined proteins, we provide biochemical traits that will support breeding programmes to address the threat of salinity in agricultural production.
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Affiliation(s)
- J Riahi
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - B Amri
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - F Chibani
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - W Azri
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - S Mejri
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - L Bennani
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - N Zoghlami
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - A Matros
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - H P Mock
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - A Ghorbel
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
| | - R Jardak
- Laboratory of Plant Molecular Physiology, Biotechnology Center of Borj Cedria, Hammam-Lif, Tunisia
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