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For: Firth NC, Atrash B, Brown N, Blagg J. MOARF, an Integrated Workflow for Multiobjective Optimization: Implementation, Synthesis, and Biological Evaluation. J Chem Inf Model 2015;55:1169-80. [DOI: 10.1021/acs.jcim.5b00073] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Singh S, Kaur N, Gehlot A. Application of artificial intelligence in drug design: A review. Comput Biol Med 2024;179:108810. [PMID: 38991316 DOI: 10.1016/j.compbiomed.2024.108810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 05/31/2024] [Accepted: 06/24/2024] [Indexed: 07/13/2024]
2
Chandraghatgi R, Ji HF, Rosen GL, Sokhansanj BA. Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening. J Chem Inf Model 2024;64:3826-3840. [PMID: 38696451 PMCID: PMC11197033 DOI: 10.1021/acs.jcim.4c00234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 04/18/2024] [Accepted: 04/19/2024] [Indexed: 05/04/2024]
3
Huang CH, Lin ST. MARS Plus: An Improved Molecular Design Tool for Complex Compounds Involving Ionic, Stereo, and Cis-Trans Isomeric Structures. J Chem Inf Model 2023;63:7711-7728. [PMID: 38100117 DOI: 10.1021/acs.jcim.3c01745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2023]
4
Kurkin DV, Morkovin EI, Bakulin DA, Gorbunova YV, Kolosov YA, Dzhavakhyan MA, Makarenko IE, Drai RV, Zaborovsky AV, Shatalova OV, Strygin AV, Petrov VI, Pleten AP, Prokopov AA, Tatarenko-Kozmina TY. Overview of drugs approved by the FDA in 2022. PHARMACY & PHARMACOLOGY 2023;11:193-210. [DOI: 10.19163/2307-9266-2023-11-3-193-210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2025]
5
Vangala SR, Krishnan SR, Bung N, Srinivasan R, Roy A. pBRICS: A Novel Fragmentation Method for Explainable Property Prediction of Drug-Like Small Molecules. J Chem Inf Model 2023;63:5066-5076. [PMID: 37585609 DOI: 10.1021/acs.jcim.3c00689] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
6
Fromer JC, Coley CW. Computer-aided multi-objective optimization in small molecule discovery. PATTERNS (NEW YORK, N.Y.) 2023;4:100678. [PMID: 36873904 PMCID: PMC9982302 DOI: 10.1016/j.patter.2023.100678] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
7
Diao Y, Hu F, Shen Z, Li H. MacFrag: segmenting large-scale molecules to obtain diverse fragments with high qualities. Bioinformatics 2023;39:6986129. [PMID: 36637187 PMCID: PMC9872447 DOI: 10.1093/bioinformatics/btad012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 01/03/2023] [Accepted: 01/11/2023] [Indexed: 01/14/2023]  Open
8
Bhattamisra SK, Banerjee P, Gupta P, Mayuren J, Patra S, Candasamy M. Artificial Intelligence in Pharmaceutical and Healthcare Research. BIG DATA AND COGNITIVE COMPUTING 2023;7:10. [DOI: 10.3390/bdcc7010010] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
9
Rai A, Shah K, Dewangan HK. Review on the Artificial Intelligence-based Nanorobotics Targeted Drug Delivery System for Brain-specific Targeting. Curr Pharm Des 2023;29:3519-3531. [PMID: 38111114 DOI: 10.2174/0113816128279248231210172053] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 11/07/2023] [Indexed: 12/20/2023]
10
Yoshizawa T, Ishida S, Sato T, Ohta M, Honma T, Terayama K. Selective Inhibitor Design for Kinase Homologs Using Multiobjective Monte Carlo Tree Search. J Chem Inf Model 2022;62:5351-5360. [PMID: 36334094 DOI: 10.1021/acs.jcim.2c00787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
11
Perron Q, Mirguet O, Tajmouati H, Skiredj A, Rojas A, Gohier A, Ducrot P, Bourguignon MP, Sansilvestri-Morel P, Do Huu N, Gellibert F, Gaston-Mathé Y. Deep generative models for ligand-based de novo design applied to multi-parametric optimization. J Comput Chem 2022;43:692-703. [PMID: 35218219 DOI: 10.1002/jcc.26826] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 01/26/2022] [Accepted: 01/27/2022] [Indexed: 11/08/2022]
12
Cincilla G, Masoni S, Blobel J. Individual and collective human intelligence in drug design: evaluating the search strategy. J Cheminform 2021;13:80. [PMID: 34635158 PMCID: PMC8507178 DOI: 10.1186/s13321-021-00556-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 09/18/2021] [Indexed: 11/10/2022]  Open
13
Nichols PL. Automated and enabling technologies for medicinal chemistry. PROGRESS IN MEDICINAL CHEMISTRY 2021;60:191-272. [PMID: 34147203 DOI: 10.1016/bs.pmch.2021.01.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
14
Meyers J, Fabian B, Brown N. De novo molecular design and generative models. Drug Discov Today 2021;26:2707-2715. [PMID: 34082136 DOI: 10.1016/j.drudis.2021.05.019] [Citation(s) in RCA: 94] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 04/21/2021] [Accepted: 05/26/2021] [Indexed: 02/09/2023]
15
Coley CW. Defining and Exploring Chemical Spaces. TRENDS IN CHEMISTRY 2021. [DOI: 10.1016/j.trechm.2020.11.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
16
Paul D, Sanap G, Shenoy S, Kalyane D, Kalia K, Tekade RK. Artificial intelligence in drug discovery and development. Drug Discov Today 2021;26:80-93. [PMID: 33099022 PMCID: PMC7577280 DOI: 10.1016/j.drudis.2020.10.010] [Citation(s) in RCA: 417] [Impact Index Per Article: 104.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 09/03/2020] [Accepted: 10/13/2020] [Indexed: 02/07/2023]
17
Lambrinidis G, Tsantili-Kakoulidou A. Multi-objective optimization methods in novel drug design. Expert Opin Drug Discov 2020;16:647-658. [PMID: 33353441 DOI: 10.1080/17460441.2021.1867095] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
18
Vanhaelen Q, Lin YC, Zhavoronkov A. The Advent of Generative Chemistry. ACS Med Chem Lett 2020;11:1496-1505. [PMID: 32832015 PMCID: PMC7429972 DOI: 10.1021/acsmedchemlett.0c00088] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Accepted: 07/14/2020] [Indexed: 12/12/2022]  Open
19
Watson OP, Cortes-Ciriano I, Taylor AR, Watson JA. A decision-theoretic approach to the evaluation of machine learning algorithms in computational drug discovery. Bioinformatics 2020;35:4656-4663. [PMID: 31070704 PMCID: PMC6853675 DOI: 10.1093/bioinformatics/btz293] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 03/22/2019] [Accepted: 04/17/2019] [Indexed: 02/07/2023]  Open
20
Coley CW, Eyke NS, Jensen KF. Autonomous Discovery in the Chemical Sciences Part I: Progress. Angew Chem Int Ed Engl 2020;59:22858-22893. [DOI: 10.1002/anie.201909987] [Citation(s) in RCA: 100] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Indexed: 01/05/2023]
21
Coley CW, Eyke NS, Jensen KF. Autonome Entdeckung in den chemischen Wissenschaften, Teil I: Fortschritt. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201909987] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
22
Ghanakota P, Bos PH, Konze KD, Staker J, Marques G, Marshall K, Leswing K, Abel R, Bhat S. Combining Cloud-Based Free-Energy Calculations, Synthetically Aware Enumerations, and Goal-Directed Generative Machine Learning for Rapid Large-Scale Chemical Exploration and Optimization. J Chem Inf Model 2020;60:4311-4325. [PMID: 32484669 DOI: 10.1021/acs.jcim.0c00120] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
23
Polishchuk P. CReM: chemically reasonable mutations framework for structure generation. J Cheminform 2020;12:28. [PMID: 33430959 PMCID: PMC7178718 DOI: 10.1186/s13321-020-00431-w] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 04/15/2020] [Indexed: 12/12/2022]  Open
24
Konze KD, Bos PH, Dahlgren MK, Leswing K, Tubert-Brohman I, Bortolato A, Robbason B, Abel R, Bhat S. Reaction-Based Enumeration, Active Learning, and Free Energy Calculations To Rapidly Explore Synthetically Tractable Chemical Space and Optimize Potency of Cyclin-Dependent Kinase 2 Inhibitors. J Chem Inf Model 2019;59:3782-3793. [PMID: 31404495 DOI: 10.1021/acs.jcim.9b00367] [Citation(s) in RCA: 71] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
25
Artificial intelligence in drug discovery. Future Med Chem 2018;10:2025-2028. [PMID: 30101607 DOI: 10.4155/fmc-2018-0212] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
26
Can we accelerate medicinal chemistry by augmenting the chemist with Big Data and artificial intelligence? Drug Discov Today 2018;23:1373-1384. [DOI: 10.1016/j.drudis.2018.03.011] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Revised: 02/27/2018] [Accepted: 03/20/2018] [Indexed: 12/18/2022]
27
Discovery of selective EGFR modulator to inhibit L858R/T790M double mutants bearing a N-9-Diphenyl-9H-purin-2-amine scaffold. Bioorg Med Chem 2018;26:1810-1822. [DOI: 10.1016/j.bmc.2018.02.029] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Revised: 02/15/2018] [Accepted: 02/17/2018] [Indexed: 12/21/2022]
28
Heikamp K, Zuccotto F, Kiczun M, Ray P, Gilbert IH. Exhaustive sampling of the fragment space associated to a molecule leading to the generation of conserved fragments. Chem Biol Drug Des 2018;91:655-667. [PMID: 29063731 PMCID: PMC5836963 DOI: 10.1111/cbdd.13129] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Revised: 10/09/2017] [Accepted: 10/14/2017] [Indexed: 11/28/2022]
29
Lombardo F, Desai PV, Arimoto R, Desino KE, Fischer H, Keefer CE, Petersson C, Winiwarter S, Broccatelli F. In Silico Absorption, Distribution, Metabolism, Excretion, and Pharmacokinetics (ADME-PK): Utility and Best Practices. An Industry Perspective from the International Consortium for Innovation through Quality in Pharmaceutical Development. J Med Chem 2017;60:9097-9113. [DOI: 10.1021/acs.jmedchem.7b00487] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
30
Meyers J, Carter M, Mok NY, Brown N. On the origins of three-dimensionality in drug-like molecules. Future Med Chem 2016;8:1753-67. [PMID: 27572621 PMCID: PMC5796639 DOI: 10.4155/fmc-2016-0095] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Accepted: 07/01/2016] [Indexed: 01/18/2023]  Open
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