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For: Leven I, Hao H, Tan S, Guan X, Penrod KA, Akbarian D, Evangelisti B, Hossain MJ, Islam MM, Koski JP, Moore S, Aktulga HM, van Duin ACT, Head-Gordon T. Recent Advances for Improving the Accuracy, Transferability, and Efficiency of Reactive Force Fields. J Chem Theory Comput 2021;17:3237-3251. [PMID: 33970642 DOI: 10.1021/acs.jctc.1c00118] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Number Cited by Other Article(s)
1
Heindel JP, Sami S, Head-Gordon T. Completely Multipolar Model as a General Framework for Many-Body Interactions as Illustrated for Water. J Chem Theory Comput 2024;20:8594-8608. [PMID: 39288266 DOI: 10.1021/acs.jctc.4c00812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2024]
2
Loi QK, Searles DJ. Reaction Dynamics of CO2 Hydrogenation on Iron Catalysts Using ReaxFF Molecular Dynamics Simulation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024;40:18430-18438. [PMID: 39012085 DOI: 10.1021/acs.langmuir.4c01212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
3
Heindel JP, LaCour RA, Head-Gordon T. The role of charge in microdroplet redox chemistry. Nat Commun 2024;15:3670. [PMID: 38693110 PMCID: PMC11519639 DOI: 10.1038/s41467-024-47879-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 04/12/2024] [Indexed: 05/03/2024]  Open
4
Maxson T, Szilvási T. Transferable Water Potentials Using Equivariant Neural Networks. J Phys Chem Lett 2024;15:3740-3747. [PMID: 38547514 DOI: 10.1021/acs.jpclett.4c00605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024]
5
Salom-Català A, Strugovshchikov E, Kaźmierczak K, Curulla-Ferré D, Ricart JM, Carbó JJ. Reactive Force Field Development for Propane Dehydrogenation on Platinum Surfaces. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2024;128:2844-2855. [PMID: 38414834 PMCID: PMC10895921 DOI: 10.1021/acs.jpcc.3c07126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 01/11/2024] [Accepted: 01/18/2024] [Indexed: 02/29/2024]
6
Nicolle A, Deng S, Ihme M, Kuzhagaliyeva N, Ibrahim EA, Farooq A. Mixtures Recomposition by Neural Nets: A Multidisciplinary Overview. J Chem Inf Model 2024;64:597-620. [PMID: 38284618 DOI: 10.1021/acs.jcim.3c01633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2024]
7
Jensen F. Unifying Charge-Flow Polarization Models. J Chem Theory Comput 2023. [PMID: 37365806 DOI: 10.1021/acs.jctc.3c00341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
8
Sami S, Marrink SJ. Reactive Martini: Chemical Reactions in Coarse-Grained Molecular Dynamics Simulations. J Chem Theory Comput 2023. [PMID: 37327401 DOI: 10.1021/acs.jctc.2c01186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
9
Hao H, Adams EM, Funke S, Schwaab G, Havenith M, Head-Gordon T. Highly Altered State of Proton Transport in Acid Pools in Charged Reverse Micelles. J Am Chem Soc 2023;145:1826-1834. [PMID: 36633459 PMCID: PMC9881006 DOI: 10.1021/jacs.2c11331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Indexed: 01/13/2023]
10
Heindel JP, Hao H, LaCour RA, Head-Gordon T. Spontaneous Formation of Hydrogen Peroxide in Water Microdroplets. J Phys Chem Lett 2022;13:10035-10041. [PMID: 36264238 DOI: 10.1021/acs.jpclett.2c01721] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
11
de Faria JC, Paupitz R, van Duin ACT, Bernal MA. Evaluation of the Reax Force-Field for Studying the Collision of an Energetic Proton with the DNA. J Chem Theory Comput 2022;18:6463-6471. [DOI: 10.1021/acs.jctc.2c00756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
12
Hao H, Ruiz Pestana L, Qian J, Liu M, Xu Q, Head‐Gordon T. Chemical transformations and transport phenomena at interfaces. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
13
Witek J, Heindel JP, Guan X, Leven I, Hao H, Naullage P, LaCour A, Sami S, Menger MFSJ, Cofer-Shabica DV, Berquist E, Faraji S, Epifanovsky E, Head-Gordon T. M-Chem: a Modular Software Package for Molecular Simulation that Spans Scientific Domains. Mol Phys 2022;121:e2129500. [PMID: 37470065 PMCID: PMC10353727 DOI: 10.1080/00268976.2022.2129500] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 09/06/2022] [Indexed: 10/10/2022]
14
Shaimardanov AR, Shulga DA, Palyulin VA. Is an Inductive Effect Explicit Account Required for Atomic Charges Aimed at Use within the Force Fields? J Phys Chem A 2022;126:6278-6294. [PMID: 36054931 DOI: 10.1021/acs.jpca.2c02722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
15
Manathunga M, Götz AW, Merz KM. Computer-aided drug design, quantum-mechanical methods for biological problems. Curr Opin Struct Biol 2022;75:102417. [PMID: 35779437 DOI: 10.1016/j.sbi.2022.102417] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 05/14/2022] [Accepted: 05/16/2022] [Indexed: 11/28/2022]
16
Lu Y, Sun Q, Liu Y, Yu P, Zhang Y, Lu J, Huang H, Yang H, Cheng T. DFT-ReaxFF hybrid molecular dynamics investigation of the decomposition effects of localized high-concentration electrolyte in lithium metal batteries: LiFSI/DME/TFEO. Phys Chem Chem Phys 2022;24:18684-18690. [PMID: 35895316 DOI: 10.1039/d2cp02130g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
17
Hognon C, Marazzi M, García-Iriepa C. Atomistic-Level Description of the Covalent Inhibition of SARS-CoV-2 Papain-like Protease. Int J Mol Sci 2022;23:5855. [PMID: 35628665 PMCID: PMC9143025 DOI: 10.3390/ijms23105855] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 05/13/2022] [Accepted: 05/21/2022] [Indexed: 12/25/2022]  Open
18
Bertolini S, Jacob T. Valence energy correction for electron reactive force field. J Comput Chem 2022;43:870-878. [PMID: 35319099 DOI: 10.1002/jcc.26844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Revised: 02/19/2022] [Accepted: 03/02/2022] [Indexed: 11/07/2022]
19
Chen X, Liu M, Gao J. CARNOT: a Fragment-Based Direct Molecular Dynamics and Virtual-Reality Simulation Package for Reactive Systems. J Chem Theory Comput 2022;18:1297-1313. [PMID: 35129348 DOI: 10.1021/acs.jctc.1c01032] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Jensen F. Using atomic charges to model molecular polarization. Phys Chem Chem Phys 2022;24:1926-1943. [PMID: 35024712 DOI: 10.1039/d1cp03542h] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
21
Hao H, Leven I, Head-Gordon T. Can electric fields drive chemistry for an aqueous microdroplet? Nat Commun 2022;13:280. [PMID: 35022410 PMCID: PMC8755715 DOI: 10.1038/s41467-021-27941-x] [Citation(s) in RCA: 111] [Impact Index Per Article: 55.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 12/14/2021] [Indexed: 11/20/2022]  Open
22
Komp E, Janulaitis N, Valleau S. Progress towards machine learning reaction rate constants. Phys Chem Chem Phys 2021;24:2692-2705. [PMID: 34935798 DOI: 10.1039/d1cp04422b] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
23
Koski JP, Moore SG, Clay RC, O'Hearn KA, Aktulga HM, Wilson MA, Rackers JA, Lane JMD, Modine NA. Water in an External Electric Field: Comparing Charge Distribution Methods Using ReaxFF Simulations. J Chem Theory Comput 2021;18:580-594. [PMID: 34914383 DOI: 10.1021/acs.jctc.1c00975] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
24
Penrod KA, Burgess MA, Akbarian D, Dabo I, Woodward WHH, van Duin ACT. Using C-DFT to develop an e-ReaxFF force field for acetophenone radical anion. J Chem Phys 2021;155:214104. [PMID: 34879661 DOI: 10.1063/5.0064705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Symons BCB, Bane MK, Popelier PLA. DL_FFLUX: A Parallel, Quantum Chemical Topology Force Field. J Chem Theory Comput 2021;17:7043-7055. [PMID: 34617748 PMCID: PMC8582247 DOI: 10.1021/acs.jctc.1c00595] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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