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For: Sifain AE, Bjorgaard JA, Nelson TR, Nebgen BT, White AJ, Gifford BJ, Gao DW, Prezhdo OV, Fernandez-Alberti S, Roitberg AE, Tretiak S. Photoexcited Nonadiabatic Dynamics of Solvated Push–Pull π-Conjugated Oligomers with the NEXMD Software. J Chem Theory Comput 2018;14:3955-3966. [DOI: 10.1021/acs.jctc.8b00103] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Ibele LM, Memhood A, Levine BG, Avagliano D. Ab Initio Multiple Spawning Nonadiabatic Dynamics with Different CASPT2 Flavors: A Fully Open-Source PySpawn/OpenMolcas Interface. J Chem Theory Comput 2024. [PMID: 39228232 DOI: 10.1021/acs.jctc.4c00855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
2
Han X, Zhao Q, Yan X, Meng T, He J. Blocking recombination centers by controlling the charge density of a sulfur vacancy in antimony trisulfide. Phys Chem Chem Phys 2023;25:32622-32631. [PMID: 38009229 DOI: 10.1039/d3cp05217f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2023]
3
Freixas VM, Malone W, Li X, Song H, Negrin-Yuvero H, Pérez-Castillo R, White A, Gibson TR, Makhov DV, Shalashilin DV, Zhang Y, Fedik N, Kulichenko M, Messerly R, Mohanam LN, Sharifzadeh S, Bastida A, Mukamel S, Fernandez-Alberti S, Tretiak S. NEXMD v2.0 Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations. J Chem Theory Comput 2023;19:5356-5368. [PMID: 37506288 DOI: 10.1021/acs.jctc.3c00583] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2023]
4
Bhat V, Callaway CP, Risko C. Computational Approaches for Organic Semiconductors: From Chemical and Physical Understanding to Predicting New Materials. Chem Rev 2023. [PMID: 37141497 DOI: 10.1021/acs.chemrev.2c00704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
5
Weight BM, Sifain AE, Gifford BJ, Htoon H, Tretiak S. On-the-Fly Nonadiabatic Dynamics Simulations of Single-Walled Carbon Nanotubes with Covalent Defects. ACS NANO 2023;17:6208-6219. [PMID: 36972076 DOI: 10.1021/acsnano.2c08579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
6
Alfonso Hernandez L, Freixas VM, Rodriguez-Hernandez B, Tretiak S, Fernandez-Alberti S, Oldani N. Exciton-vibrational dynamics induces efficient self-trapping in a substituted nanoring. Phys Chem Chem Phys 2022;24:24095-24104. [PMID: 36178044 DOI: 10.1039/d2cp03162k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
7
Hu Z, Sun X. All-Atom Nonadiabatic Semiclassical Mapping Dynamics for Photoinduced Charge Transfer of Organic Photovoltaic Molecules in Explicit Solvents. J Chem Theory Comput 2022;18:5819-5836. [PMID: 36073792 DOI: 10.1021/acs.jctc.2c00631] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
8
Tracy DA, Fernandez-Alberti S, Tretiak S, Roitberg AE. Adiabatic Excited-State Molecular Dynamics with an Explicit Solvent: NEXMD-SANDER Implementation. J Chem Theory Comput 2022;18:5213-5220. [PMID: 36044726 DOI: 10.1021/acs.jctc.2c00561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
9
Zheng Y, Han Y, Weight BM, Lin Z, Gifford BJ, Zheng M, Kilin D, Kilina S, Doorn SK, Htoon H, Tretiak S. Photochemical spin-state control of binding configuration for tailoring organic color center emission in carbon nanotubes. Nat Commun 2022;13:4439. [PMID: 35915090 PMCID: PMC9343348 DOI: 10.1038/s41467-022-31921-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 07/04/2022] [Indexed: 12/04/2022]  Open
10
Erickson M, Han Y, Rasulev B, Kilin D. Molecular Dynamics Study of the Photodegradation of Polymeric Chains. J Phys Chem Lett 2022;13:4374-4380. [PMID: 35544382 DOI: 10.1021/acs.jpclett.2c00802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
11
Shu Y, Zhang L, Chen X, Sun S, Huang Y, Truhlar DG. Nonadiabatic Dynamics Algorithms with Only Potential Energies and Gradients: Curvature-Driven Coherent Switching with Decay of Mixing and Curvature-Driven Trajectory Surface Hopping. J Chem Theory Comput 2022;18:1320-1328. [PMID: 35104136 DOI: 10.1021/acs.jctc.1c01080] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
12
Coupled- and Independent-Trajectory Approaches Based on the Exact Factorization Using the PyUNIxMD Package. Top Curr Chem (Cham) 2022;380:8. [PMID: 35083549 DOI: 10.1007/s41061-021-00361-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 11/11/2021] [Indexed: 10/19/2022]
13
Kron K, Rodriguez-Katakura A, Elhessen R, Mallikarjun Sharada S. Photoredox Chemistry with Organic Catalysts: Role of Computational Methods. ACS OMEGA 2021;6:33253-33264. [PMID: 34926877 PMCID: PMC8674904 DOI: 10.1021/acsomega.1c05787] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 11/24/2021] [Indexed: 05/09/2023]
14
Titov E, Hummert J, Ikonnikov E, Mitrić R, Kornilov O. Electronic relaxation of aqueous aminoazobenzenes studied by time-resolved photoelectron spectroscopy and surface hopping TDDFT dynamics calculations. Faraday Discuss 2021;228:226-241. [PMID: 33586720 DOI: 10.1039/d0fd00111b] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
15
Santoro F, Green JA, Martinez-Fernandez L, Cerezo J, Improta R. Quantum and semiclassical dynamical studies of nonadiabatic processes in solution: achievements and perspectives. Phys Chem Chem Phys 2021;23:8181-8199. [PMID: 33875988 DOI: 10.1039/d0cp05907b] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
16
Freixas VM, White AJ, Nelson T, Song H, Makhov DV, Shalashilin D, Fernandez-Alberti S, Tretiak S. Nonadiabatic Excited-State Molecular Dynamics Methodologies: Comparison and Convergence. J Phys Chem Lett 2021;12:2970-2982. [PMID: 33730495 DOI: 10.1021/acs.jpclett.1c00266] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
17
Smith B, Shakiba M, Akimov AV. Crystal Symmetry and Static Electron Correlation Greatly Accelerate Nonradiative Dynamics in Lead Halide Perovskites. J Phys Chem Lett 2021;12:2444-2453. [PMID: 33661640 DOI: 10.1021/acs.jpclett.0c03799] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
18
Smith B, Shakiba M, Akimov AV. Nonadiabatic Dynamics in Si and CdSe Nanoclusters: Many-Body vs Single-Particle Treatment of Excited States. J Chem Theory Comput 2021;17:678-693. [DOI: 10.1021/acs.jctc.0c01009] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
19
Freixas VM, Nelson T, Ondarse-Alvarez D, Nijjar P, Mikhailovsky A, Zhou C, Fernandez-Alberti S, Bazan GC, Tretiak S. Experimental and theoretical study of energy transfer in a chromophore triad: What makes modeling dynamics successful? J Chem Phys 2020;153:244114. [PMID: 33380074 DOI: 10.1063/5.0028126] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
20
Fedorov DA, Seritan S, Fales BS, Martínez TJ, Levine BG. PySpawn: Software for Nonadiabatic Quantum Molecular Dynamics. J Chem Theory Comput 2020;16:5485-5498. [PMID: 32687710 DOI: 10.1021/acs.jctc.0c00575] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
21
Malone W, Nebgen B, White A, Zhang Y, Song H, Bjorgaard JA, Sifain AE, Rodriguez-Hernandez B, Freixas VM, Fernandez-Alberti S, Roitberg AE, Nelson TR, Tretiak S. NEXMD Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations. J Chem Theory Comput 2020;16:5771-5783. [DOI: 10.1021/acs.jctc.0c00248] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
22
Rodríguez-Hernández B, Oldani N, Martínez-Mesa A, Uranga-Piña L, Tretiak S, Fernandez-Alberti S. Photoexcited energy relaxation and vibronic couplings in π-conjugated carbon nanorings. Phys Chem Chem Phys 2020;22:15321-15332. [PMID: 32628225 DOI: 10.1039/d0cp01452d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
23
Mališ M, Luber S. Trajectory Surface Hopping Nonadiabatic Molecular Dynamics with Kohn–Sham ΔSCF for Condensed-Phase Systems. J Chem Theory Comput 2020;16:4071-4086. [DOI: 10.1021/acs.jctc.0c00372] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
24
Zhang Y, Li L, Tretiak S, Nelson T. Nonadiabatic Excited-State Molecular Dynamics for Open-Shell Systems. J Chem Theory Comput 2020;16:2053-2064. [DOI: 10.1021/acs.jctc.9b00928] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
25
Smith B, Akimov AV. Modeling nonadiabatic dynamics in condensed matter materials: some recent advances and applications. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020;32:073001. [PMID: 31661681 DOI: 10.1088/1361-648x/ab5246] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
26
Nelson TR, White AJ, Bjorgaard JA, Sifain AE, Zhang Y, Nebgen B, Fernandez-Alberti S, Mozyrsky D, Roitberg AE, Tretiak S. Non-adiabatic Excited-State Molecular Dynamics: Theory and Applications for Modeling Photophysics in Extended Molecular Materials. Chem Rev 2020;120:2215-2287. [PMID: 32040312 DOI: 10.1021/acs.chemrev.9b00447] [Citation(s) in RCA: 213] [Impact Index Per Article: 53.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
27
Patrizi B, Cozza C, Pietropaolo A, Foggi P, Siciliani de Cumis M. Synergistic Approach of Ultrafast Spectroscopy and Molecular Simulations in the Characterization of Intramolecular Charge Transfer in Push-Pull Molecules. Molecules 2020;25:E430. [PMID: 31968694 PMCID: PMC7024558 DOI: 10.3390/molecules25020430] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Revised: 01/14/2020] [Accepted: 01/17/2020] [Indexed: 11/28/2022]  Open
28
He J, Fang WH, Long R. Unravelling the effects of oxidation state of interstitial iodine and oxygen passivation on charge trapping and recombination in CH3NH3PbI3 perovskite: a time-domain ab initio study. Chem Sci 2019;10:10079-10088. [PMID: 32055362 PMCID: PMC6991187 DOI: 10.1039/c9sc02353d] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/08/2019] [Indexed: 11/21/2022]  Open
29
Zhang Y, Nelson T, Tretiak S. Non-adiabatic molecular dynamics of molecules in the presence of strong light-matter interactions. J Chem Phys 2019;151:154109. [PMID: 31640366 DOI: 10.1063/1.5116550] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
30
Ondarse-Alvarez D, Nelson T, Lupton JM, Tretiak S, Fernandez-Alberti S. Let Digons be Bygones: The Fate of Excitons in Curved π-Systems. J Phys Chem Lett 2018;9:7123-7129. [PMID: 30508376 DOI: 10.1021/acs.jpclett.8b03160] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
31
Sifain AE, Gifford BJ, Gao DW, Lystrom L, Nelson TR, Tretiak S. NEXMD Modeling of Photoisomerization Dynamics of 4-Styrylquinoline. J Phys Chem A 2018;122:9403-9411. [DOI: 10.1021/acs.jpca.8b09103] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
32
Akimov AV. A Simple Phase Correction Makes a Big Difference in Nonadiabatic Molecular Dynamics. J Phys Chem Lett 2018;9:6096-6102. [PMID: 30286602 DOI: 10.1021/acs.jpclett.8b02826] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
33
Titov E, Humeniuk A, Mitrić R. Exciton localization in excited-state dynamics of a tetracene trimer: a surface hopping LC-TDDFTB study. Phys Chem Chem Phys 2018;20:25995-26007. [PMID: 30298878 DOI: 10.1039/c8cp05240a] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
34
Lystrom L, Zhang Y, Tretiak S, Nelson T. Site-Specific Photodecomposition in Conjugated Energetic Materials. J Phys Chem A 2018;122:6055-6061. [DOI: 10.1021/acs.jpca.8b04381] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
35
Ondarse-Alvarez D, Oldani N, Roitberg AE, Kleiman V, Tretiak S, Fernandez-Alberti S. Energy transfer and spatial scrambling of an exciton in a conjugated dendrimer. Phys Chem Chem Phys 2018;20:29648-29660. [DOI: 10.1039/c8cp05852k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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