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Silva Ferraz JM, Emel'yanenko VN, Zaitsau DH, Samarov AA, Brunetti B, Ciccioli A, Vecchio Ciprioti S, Verevkin SP. Thermodynamic Insights on the Structure-Property Relationships in Substituted Benzenes: Are the Pairwise Interactions in Tri-Substituted Methyl-Nitro-Benzoic Acids Still Valid? Chempluschem 2025:e202400703. [PMID: 39898523 DOI: 10.1002/cplu.202400703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2024] [Revised: 02/01/2025] [Accepted: 02/03/2025] [Indexed: 02/04/2025]
Abstract
A comprehensive experimental thermochemical study of nine methyl-substituted nitrobenzoic acids was carried out, leading to the final standard molar enthalpies of formation in the gas phase. The combustion energies were measured using high-precision combustion calorimetry, and the enthalpies of formation of the crystal phase were derived. The sublimation enthalpies were obtained from the vapor pressure-temperature dependencies measured using the classic Knudsen effusion mass loss and the transpiration methods. The standard molar enthalpies of vaporisation were derived from the temperature dependence of the mass-loss rates measured using the non-isothermal thermogravimetry. The thermal behaviour, including melting temperatures and standard molar enthalpies of fusion, was investigated by DSC. The high-level quantum chemical G* methods were used for the mutual validation of the experimental and theoretical gas phase enthalpies of formation of methyl-substituted nitrobenzoic acids. The consistent set of experimental properties at the reference temperature T=298 K was evaluated and recommended for thermochemical calculations. The pairwise interactions of the substituents on the benzene ring were derived from nitro-toluenes, methyl-benzoic acids and nitro-benzoic acids available in the literature, and the additivity of the contributions when three substituents are placed simultaneously in the benzene ring was discussed.
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Affiliation(s)
- José M Silva Ferraz
- Department of Basic and Applied Sciences for Engineering (S.B.A.I.), Sapienza University of Rome, Via del Castro Laurenziano 7, Building RM017, 00161, Rome, Italy
| | - Vladimir N Emel'yanenko
- Competence Centre CALOR, Department Life, Light & Matter, Faculty of Interdisciplinary Research, University of Rostock, 18059, Rostock, Germany
| | - Dzmitry H Zaitsau
- Institute of Technical Thermodynamics, University of Rostock, 18059, Rostock, Germany
- FVTR GmbH, 18059, Rostock, Germany
| | - Artemiy A Samarov
- Saint Petersburg State University Peterhof, 198504, Saint Petersburg, Russian Federation
| | - Bruno Brunetti
- Istituto per lo Studio dei Materiali Nanostrutturati, Consiglio Nazionale delle Ricerche, Department of Chemistry, Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy
| | - Andrea Ciccioli
- Department of Chemistry, Sapienza University of Rome, P.le Aldo Moro 5, 00185, Rome, Italy
| | - Stefano Vecchio Ciprioti
- Department of Basic and Applied Sciences for Engineering (S.B.A.I.), Sapienza University of Rome, Via del Castro Laurenziano 7, Building RM017, 00161, Rome, Italy
| | - Sergey P Verevkin
- Competence Centre CALOR, Department Life, Light & Matter, Faculty of Interdisciplinary Research, University of Rostock, 18059, Rostock, Germany
- Institute of Technical Thermodynamics, University of Rostock, 18059, Rostock, Germany
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Fekri S, Mansoori Y, Esquivel D, Navarro MA. Efficient Hydrodehalogenation of Aryl Halides Catalyzed by Bis(NHC)-Pd(II) Complex Supported on Magnetic Mesoporous Silica. Catal Letters 2023. [DOI: 10.1007/s10562-023-04319-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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He X, Peng G, Luo J, Huang JP, Yang J, Yan Y, Gu YC, Wang L, Huang SX. O-Alkylazoxymycins A-F, Naturally Occurring Azoxy-Aromatic Compounds from Streptomyces sp. Py50. JOURNAL OF NATURAL PRODUCTS 2023; 86:176-181. [PMID: 36634313 DOI: 10.1021/acs.jnatprod.2c00892] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Six new azoxy-aromatic compounds (o-alkylazoxymycins A-F, 1-6) and two new nitrogen-bearing phenylvaleric/phenylheptanoic acid derivatives (o-alkylphemycins A and B, 7 and 8) were isolated from Streptomyces sp. Py50. Their structures were elucidated based on HRESIMS, NMR, UV spectroscopic analyses, and X-ray crystallographic data. O-Alkylazoxymycins A-F (1-6) are the first natural examples of azoxy compounds with the azoxy bond attached to the ortho-position of the phenylheptanoic acid or phenylvaleric acid moiety. Compounds 1, 5, and 6 were active against Epidermophyton floccosum with MIC50 values ranging from 10.1 to 51.2 μM. A plausible biosynthetic pathway of 2 and 3 was proposed.
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Affiliation(s)
- Xin He
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
- State Key Laboratory of Southwestern Chinese Medicine Resources, Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, People's Republic of China
- University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
| | - Guoqing Peng
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
- State Key Laboratory of Southwestern Chinese Medicine Resources, Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, People's Republic of China
| | - Jianying Luo
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
- University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
| | - Jian-Ping Huang
- State Key Laboratory of Southwestern Chinese Medicine Resources, Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, People's Republic of China
| | - Jing Yang
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
| | - Yijun Yan
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
| | - Yu-Cheng Gu
- Syngenta Jealott's Hill International Research Centre, Bracknell, Berkshire RG42 6EY, U.K
| | - Li Wang
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
- State Key Laboratory of Southwestern Chinese Medicine Resources, Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, People's Republic of China
| | - Sheng-Xiong Huang
- State Key Laboratory of Phytochemistry and Plant Resources in West China, and CAS Center for Excellence in Molecular Plant Sciences, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, People's Republic of China
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Saneyoshi H, Nakamura K, Terasawa K, Ono A. A Bioreductive Protecting Group for RNA Synthesis. Curr Protoc 2021; 1:e240. [PMID: 34499818 DOI: 10.1002/cpz1.240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
This protocol describes a method for the preparation of ribonucleoside phosphoramidite bearing a bioreductive protecting group on the 2'-OH group and its application in the synthesis of bioreduction-responsive oligonucleotides. The protecting group used in this method consists of the modified 4-nitrobenzyl skeleton, which has gem-dimethyl groups at benzylic positions to enable deprotection under physiological conditions. Applying the synthesized ribonucleoside phosphoramidite to solid-phase synthesis of oligonucleotides, a 2'-O-protected oligonucleotide was obtained without any undesirable cleavages under standard oligonucleotide synthesis conditions. The 2'-O-protected oligonucleotide was then treated with a combination of nitroreductase (Escherichia coli) and NADH as a bioreduction system for cleavage of the 2'-O-protecting group. After reduction of the nitro group, the protecting group was deprotected in a time-dependent manner. Thus, this protection technology is a potential new tool for production of reduction-responsive RNA-based materials that can be used in life and medical sciences. © 2021 Wiley Periodicals LLC. Basic Protocol 1: Synthesis of ribonucleoside phosphoramidite bearing a bioreductive protecting group Basic Protocol 2: Synthesis of 2'-O-protected oligonucleotides and their deprotection properties under bioreduction.
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Affiliation(s)
- Hisao Saneyoshi
- Department of Chemistry, Shiga University of Medical Science, Otsu, Shiga, Japan
| | - Kodai Nakamura
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama, Japan
| | - Kazuma Terasawa
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama, Japan
| | - Akira Ono
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, Yokohama, Japan
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Bezerra MM, Leão RA, Miranda LS, de Souza RO. A brief history behind the most used local anesthetics. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131628] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Shen HM, Liu L, Qi B, Hu MY, Ye HL, She YB. Efficient and selective oxidation of secondary benzylic C H bonds to ketones with O2 catalyzed by metalloporphyrins under solvent-free and additive-free conditions. MOLECULAR CATALYSIS 2020. [DOI: 10.1016/j.mcat.2020.111102] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Saneyoshi H, Nakamura K, Terasawa K, Ono A. Development of Bioreduction Labile Protecting Groups for the 2'-Hydroxyl Group of RNA. Org Lett 2020; 22:6006-6009. [PMID: 32663406 DOI: 10.1021/acs.orglett.0c02086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Protection and deprotection of the 2'-hydroxyl group of RNAs are critical for RNA-based drug discovery. This paper reports development of a bioreduction labile protecting group of the 2'-hydroxyl group in RNA. After the reduction of the nitro group in a chemical or enzymatic manner, the protecting groups were removed spontaneously. The attachment of electron-donating groups to the benzene ring or benzylic carbon enabled fast and controllable deprotection of the 2'-hydroxyl protecting group under physiological conditions.
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Affiliation(s)
- Hisao Saneyoshi
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama 221-8686, Japan
| | - Kodai Nakamura
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama 221-8686, Japan
| | - Kazuma Terasawa
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama 221-8686, Japan
| | - Akira Ono
- Department of Material and Life Chemistry, Faculty of Engineering, Kanagawa University, 3-27-1 Rokkakubashi, Kanagawa-ku, Yokohama 221-8686, Japan
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Gao W, Song Y, Jiao W, Liu Y. A catalyst-free and highly efficient approach to ozonation of benzyl alcohol to benzoic acid in a rotating packed bed. J Taiwan Inst Chem Eng 2019. [DOI: 10.1016/j.jtice.2019.07.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Yang Y, Li G, Mao X, She Y. Selective Aerobic Oxidation of 4-Ethylnitrobenzene to 4-Nitroacetophenone Promoted by Metalloporphyrins. Org Process Res Dev 2019. [DOI: 10.1021/acs.oprd.9b00030] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuning Yang
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China
| | - Guijie Li
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China
| | - Xinbiao Mao
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China
| | - Yuanbin She
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China
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