Role of Proton Tunneling and Metal-Free Organocatalysis in the Decomposition of Methanediol: A Theoretical Study

Metal-free catalysis for the reaction of nitrogen dioxide dimer with phenol: An unexpected favorable source of nitrate and aerosol precursors in vehicle exhaust

Atmospheric reaction mechanism and dynamics of phenol with nitrogen dioxide dimer were explored by the density functional theory and high-level quantum chemistry combined with statistical kinetic calculations within 220-800 K. The nitric acid and phenyl nitrite, the typical aerosol precursors, are the preponderant products because of the low formation free energy barrier (∼8.7 kcal/mol) and fast rate constants (∼10^-15 cm³ molecule^-1 s^-1 at 298 K). Phenyl nitrate is the minor product and it would be also formed from the transformation of phenyl nitrite in NO₂-rich environment. More importantly, kinetic effects and catalytic mechanism of a series of metal-free catalysts (H₂O, NH₃, CH₃NH₂, CH₃NHCH₃, HCOOH, and CH₃COOH) on the title reaction were investigated at the same level. The results indicate that CH₃NH₂ and CH₃NHCH₃ can not only catalyze the title reaction by lowering the free energy barrier (about 1.4-6.5 kcal/mol) but also facilitate the production of organic ammonium nitrate via acting as a donor-acceptor of hydrogen. Conversely, the other species are non-catalytic upon the title reaction. The stabilization energies and donor-acceptor interactions in alkali-catalyzed product complexes were explored, which can provide new insights to the properties of aerosol precursors. Moreover, the lifetime of phenol determined by nitrogen dioxide dimer in the presence of dimethylamine may compete with that of determined by OH radicals, indicating that nitrogen dioxide dimer is responsible for the elimination of phenol in the polluted atmosphere. This work could help us thoroughly understand the removal of nitrogen oxides and phenol as well as new aerosol precursor aggregation in vehicle exhaust.

Synthesis of methanediol [CH2(OH)2]: The simplest geminal diol

Methanediol [CH₂(OH)₂] represents a pivotal atmospheric volatile organic compound and plays a fundamental role in aerosol growth. Although sought for decades, methanediol has never been identified due to the inherent dehydration tendency of two adjacent hydroxyl groups (OH) at the same carbon atom. Here, we prepare and identify methanediol via processing of low-temperature ices followed by sublimation into the gas phase. These findings open up a concept to synthesize and characterize unstable geminal diols—critical organic transients in Earth’s atmosphere. The excited state dynamics of oxygen may also lead to methanediol in methanol-rich interstellar ices in cold molecular clouds, followed by sublimation in star-forming regions and prospective detection of these reactive intermediates in the gas phase by radiotelescopes.

Geminal diols—organic molecules carrying two hydroxyl groups at the same carbon atom—have been recognized as key reactive intermediates by the physical (organic) chemistry and atmospheric science communities as fundamental transients in the aerosol cycle and in the atmospheric ozonolysis reaction sequence. Anticipating short lifetimes and their tendency to fragment to water plus the aldehyde or ketone, free geminal diols represent one of the most elusive classes of organic reactive intermediates. Here, we afford an exceptional glance into the preparation of the previously elusive methanediol [CH₂(OH)₂] transient—the simplest geminal diol—via energetic processing of low-temperature methanol–oxygen ices. Methanediol was identified in the gas phase upon sublimation via isomer-selective photoionization reflectron time-of-flight mass spectrometry combined with isotopic substitution studies. Electronic structure calculations reveal that methanediol is formed via excited state dynamics through insertion of electronically excited atomic oxygen into a carbon–hydrogen bond of the methyl group of methanol followed by stabilization in the icy matrix. The first preparation and detection of methanediol demonstrates its gas-phase stability as supported by a significant barrier hindering unimolecular decomposition to formaldehyde and water. These findings advance our perception of the fundamental chemistry and chemical bonding of geminal diols and signify their role as an efficient sink of aldehydes and ketones in atmospheric environments eventually coupling the atmospheric chemistry of geminal diols and Criegee intermediates.

Catalytic effect of water and formic acid on the reaction of carbonyl sulfide with dimethyl amine under tropospheric conditions

CCSD(T)/aug-cc-pVTZ//M06-2X/aug-cc-pVTZ calculations were performed on the addition of amines [i.e. ammonia (NH₃), methyl amine (MA), and dimethyl amine (DMA)] to carbonyl sulfide (OCS), followed by transfer of the amine H-atom to either the S-atom or O-atom of OCS, assisted by a single water (H₂O) or a formic acid (FA) molecule, leading to the formation of the corresponding carbamothioic S- or O acids. For the OCS + NH₃ and OCS + MA reactions with or without the H₂O or FA, very high barriers were observed, making these reactions unfeasible. Interestingly, the barrier heights for the OCS + DMA reaction, involving H-atom transfer to either the S-atom or O-atom of OCS and assisted by a FA, were found to be -4.2 kcal mol^-1 and -3.9 kcal mol^-1, respectively, relative to those of the separated reactants. The barrier height values suggest that FA lowers the reaction barriers by ∼28.4 kcal mol^-1 and ∼35.9 kcal mol^-1 compared to the OCS + DMA reaction without the catalyst. Rate coefficient calculations were performed on the OCS + DMA reaction both without a catalyst, and assisted by a H₂O and a FA molecule using canonical variational transition state theory and small curvature tunneling at the temperatures between 200 and 300 K. The rate data show that the OCS + DMA + FA reaction proceeds through H-atom transfer to the S-atom of OCS, which was found to be ∼10³-10¹¹ and 10³-10¹⁰ times faster than the OCS + DMA and OCS + DMA + H₂O reactions, respectively, in the studied temperature range. For the same temperature range, the rate of the OCS + DMA + FA reaction was found to be ∼10⁸-10¹⁶ and 10³-10¹² times faster than the OCS + DMA and OCS + DMA + H₂O reactions in which H-atom transfer to the O-atom of OCS occurred. This suggests that the OCS + DMA reaction that is assisted by FA is more efficient than the H₂O assisted reaction. In addition, the rate of the OCS + DMA + FA reaction was found to be ∼10¹⁰ times slower than the OCS + ˙OH reaction at 298 K. This clarifies that the OCS + DMA + FA reaction may be feasible for the atmospheric removal of OCS under night-time forest fire conditions when the OCS and DMA concentrations are high and the ˙OH concentration is low.

DFT analysis on the removal of dimethylbenzoquinones in atmosphere and water environments: ·OH-initiated oxidation and captured by (TiO2)n clusters (n=1-6)

The elimination mechanisms and the dynamics of 2,5-dimethylbenzoquinone/2,6-dimethylbenzoquinone are performed by DFT under the presence of ·OH radical and TiO₂-clusters. The rate coefficients, calculated within the atmospheric and combustion temperature range of 200-2000 K, agree well with the experimental data. The subsequent reactions including the bond cleavage of quinone ring, O₂ addition or abstraction, the reactions of peroxy radical with NO yielding the precursor of organic aerosol are studied. Gaseous water molecule plays an important role in the transformation of alkoxy radical and exhibits a catalytic performance in the enol-ketone tautomerism. The lifetimes of 2,5-dimethylbenzoquinone/2,6-dimethylbenzoquinone are about 12.04-12.86 h at 298 K, which are in favor of the medium range transport of them in the atmosphere. Significantly, the water environment plays a negative role on the ·OH-degradation of dimethylbenzoquinone. Compared to the quinone ring, 2,5-dimethylbenzoquinone onto (TiO₂)_n clusters (n = 1-6) is easier to be absorbed by TiO₂-clusters through its oxygen site because of its strong chemisorption, which indicates that TiO₂-clusters are capable of trapping dimethylbenzoquinones effectively. The water environment could weaken the adsorption of 2,5-dimethylbenzoquinone onto (TiO₂)_n clusters (n = 1-6) by increasing the adsorption energy. This work reveals the removal of dimethylbenzoquinones and the formation of organic aerosol under polluted environments.

DFT investigations for the catalytic reaction mechanism of methane combustion occurring on Pd(ii)/Al-MCM-41

In this work, a theoretical analysis was carried out on the mechanism of methane combustion occurring on single site palladium oxide species [Pd]2+ supported on Al-MCM-41 silica. Single site Pd-oxo and PdO2-superoxo structures were used to represent the active centers. Activation energies for all the elementary steps involved in the oxidation of methane into formaldehyde are presented. The competition of methane/methanol substrates on active sites was examined. It was found that the formation of methanol via the reaction of methane with the superoxo species, formed via the adsorption of O2 on reduced Pd(ii) centers, facilitates the production of the very active Pd-oxo catalytic sites.

Closed-Shell Organic Compounds Might Form Dimers at the Surface of Molecular Clusters

The role of covalently bound dimer formation is studied using high-level quantum chemical methods. Reaction free energy profiles for dimer formation between common oxygen-containing functional groups are calculated, and based on the Gibbs free energy differences between transition states and reactants, we show that none of the studied two-component gas-phase reactions are kinetically feasible at 298.15 K and 1 atm. Therefore, the catalyzing effect of water, base, or acid molecules is calculated, and sulfuric acid is identified to lower the activation free energies significantly. We find that the reactions yielding hemiacetal, peroxyhemiacetal, α-hydroxyester, and geminal diol products occur with activation free energies of less than 10 kcal/mol with sulfuric acid as a catalyst, indicating that these reactions could potentially take place on the surface of sulfuric acid clusters. Additionally, the formed dimer products bind stronger onto the pre-existing cluster than the corresponding reagent monomers do. This implies that covalent dimerization reactions stabilize the existing cluster thermodynamically and make it less likely to evaporate. However, the studied small organic compounds, which contain only one functional group, are not able to form dimer products that are stable against evaporation at atmospheric conditions. Calculations of dimer formation onto a cluster surface and the clustering ability of dimer products should be extended to large terpene oxidation products in order to estimate the real atmospheric significance.

Variational transition state theory: theoretical framework and recent developments

This article reviews the fundamentals of variational transition state theory (VTST), its recent theoretical development, and some modern applications.