1
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Sigmund LM, Maier R, Greb L. The inversion of tetrahedral p-block element compounds: general trends and the relation to the second-order Jahn-Teller effect. Chem Sci 2022; 13:510-521. [PMID: 35126983 PMCID: PMC8729809 DOI: 10.1039/d1sc05395g] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 12/14/2021] [Indexed: 12/31/2022] Open
Abstract
The tetrahedron is the primary structural motif among the p-block elements and determines the architecture of our bio- and geosphere. However, a broad understanding of the configurational inversion of tetrahedral compounds is missing. Here, we report over 250 energies (DLPNO-CCSD(T)) for square planar inversion of third- and fourth-period element species of groups 13, 14, and 15. Surprisingly low inversion barriers are identified for compounds of industrial relevance (e.g., ≈100 kJ mol-1 for Al(OH)4 -). More fundamentally, the second-order Jahn-Teller theorem is disclosed as suitable to rationalize substituent and central element effects. Bond analysis tools give further insights into the preference of eight valence electron systems with four substituents to be tetrahedral. Hence, this study develops a model to understand, memorize, and predict the angular flexibility of tetrahedral species. Perceiving the tetrahedron not as forcingly rigid but as a dynamic structural entity might leverage new approaches and visions for adaptive matter.
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Affiliation(s)
- Lukas M Sigmund
- Anorganisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Rouven Maier
- Anorganisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Lutz Greb
- Anorganisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
- Department of Chemistry and Biochemistry - Inorganic Chemistry, Freie Universität Berlin Fabeckstr. 34/36 14195 Berlin Germany
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2
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Chen X, Hu C, Zhang X, Liu S, Mei Y, Hu G, Liu LL, Li Z, Su CY. Reversible Stereoisomerization of 1,3-Diphosphetane Frameworks Revealed by a Single-Electron Redox Approach. Inorg Chem 2021; 60:5771-5778. [PMID: 33780618 DOI: 10.1021/acs.inorgchem.1c00064] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The discovery of pyramidal inversion has continued to impact modern organic and organometallic chemistry. Sequential alkylation reactions of an N-heterocyclic carbene (NHC) ligated dicarbondiphosphide 1 with RI (R = Me, Et, or iBu) and ZnMe2 give rise to the highly stereoselective synthesis of cis-1,3-diphosphetanes 3. cis-3 is conformationally favorable at room temperature, whereas inversion to trans-3 is observed at 110 °C. One-electron oxidation of cis-3 with Fc+(BArF) (Fc = [Fe(C5H5)2]; BArF = [B(3,5-(CF3)2C6H3)4)]-) leads to the stereoselective formation of trans-1,3-diphosphetane radical cation salts 3•+(BArF), which can be reversibly transformed to cis-3 upon one-electron reduction. Salts 3•+(BArF) represent the first examples of 1,3-diphosphetane radical cations. These results provide a potential application of planar four-membered heterocycle-based building blocks for electrically fueled molecular switches.
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Affiliation(s)
- Xiaodan Chen
- Guangdong Provincial Key Laboratory of Functional Supramolecular Coordination Materials and Applications, College of Chemistry and Materials Science, Jinan University, Guangzhou 510632, China
| | - Chenyang Hu
- Shenzhen Grubbs Institute and Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Xu Zhang
- Guangdong Provincial Key Laboratory of Functional Supramolecular Coordination Materials and Applications, College of Chemistry and Materials Science, Jinan University, Guangzhou 510632, China
| | - Shihua Liu
- Lehn Institute of Functional Materials (LIFM), School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, China
| | - Yanbo Mei
- Shenzhen Grubbs Institute and Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Guping Hu
- Lehn Institute of Functional Materials (LIFM), School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, China
| | - Liu Leo Liu
- Shenzhen Grubbs Institute and Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Zhongshu Li
- Guangdong Provincial Key Laboratory of Functional Supramolecular Coordination Materials and Applications, College of Chemistry and Materials Science, Jinan University, Guangzhou 510632, China.,Lehn Institute of Functional Materials (LIFM), School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, China
| | - Cheng-Yong Su
- Lehn Institute of Functional Materials (LIFM), School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, China
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3
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Bender J, Skowrońska A, Dołęga A, Nieger M, Gudat D. On thio‐substituted N‐heterocyclic arsines. Z Anorg Allg Chem 2021. [DOI: 10.1002/zaac.202100006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Johannes Bender
- Institut für Anorganische Chemie Universität Stuttgart Pfaffenwaldring 55 70550 Stuttgart Germany
| | - Agnieszka Skowrońska
- Dept. of Inorganic Chemistry Gdansk University of Technology Narutowicza St. 11/12 80-233 Gdańsk Poland
| | - Anna Dołęga
- Dept. of Inorganic Chemistry Gdansk University of Technology Narutowicza St. 11/12 80-233 Gdańsk Poland
| | - Martin Nieger
- Department of Chemistry University of Helsinki P.O Box 55 00014 University of Helsinki Finland
| | - Dietrich Gudat
- Institut für Anorganische Chemie Universität Stuttgart Pfaffenwaldring 55 70550 Stuttgart Germany
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4
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Santra G, Martin JML. What Types of Chemical Problems Benefit from Density-Corrected DFT? A Probe Using an Extensive and Chemically Diverse Test Suite. J Chem Theory Comput 2021; 17:1368-1379. [PMID: 33625863 PMCID: PMC8028055 DOI: 10.1021/acs.jctc.0c01055] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
![]()
For the large and
chemically diverse GMTKN55 benchmark suite, we
have studied the performance of density-corrected density functional
theory (HF-DFT), compared to self-consistent DFT, for several pure
and hybrid GGA and meta-GGA exchange–correlation (XC) functionals
(PBE, BLYP, TPSS, and SCAN) as a function of the percentage of HF
exchange in the hybrid. The D4 empirical dispersion correction has
been added throughout. For subsets dominated by dynamical correlation,
HF-DFT is highly beneficial, particularly at low HF exchange percentages.
This is especially true for noncovalent interactions where the electrostatic
component is dominant, such as hydrogen and halogen bonds: for π-stacking,
HF-DFT is detrimental. For subsets with significant nondynamical correlation
(i.e., where a Hartree–Fock determinant is not a good zero-order
wavefunction), HF-DFT may do more harm than good. While the self-consistent
series show optima at or near 37.5% (i.e., 3/8) for all four XC functionals—consistent
with Grimme’s proposal of the PBE38 functional—HF-BnLYP-D4, HF-PBEn-D4, and HF-TPSSn-D4 all exhibit minima nearer 25% (i.e., 1/4) as the use
of HF orbitals greatly mitigates the error at 25% for barrier heights.
Intriguingly, for HF-SCANn-D4, the minimum is near
10%, but the weighted mean absolute error (WTMAD2) for GMTKN55 is
only barely lower than that for HF-SCAN-D4 (i.e., where the post-HF
step is a pure meta-GGA). The latter becomes an attractive option,
only slightly more costly than pure Hartree–Fock, and devoid
of adjustable parameters other than the three in the dispersion correction.
Moreover, its WTMAD2 is only surpassed by the highly empirical M06-2X
and by the combinatorially optimized empirical range-separated hybrids
ωB97X-V and ωB97M-V.
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Affiliation(s)
- Golokesh Santra
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, 7610001 Reḥovot, Israel
| | - Jan M L Martin
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, 7610001 Reḥovot, Israel
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5
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Wedler HB, Wendelboe P, Tantillo DJ, Power PP. Second order Jahn-Teller interactions at unusually high molecular orbital energy separations. Dalton Trans 2020; 49:5175-5182. [PMID: 32236283 DOI: 10.1039/d0dt00137f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Second order Jahn-Teller (SOJT) effects arise from interactions between filled and empty molecular orbitals of like symmetry. These interactions often lead to structural distortions whose extent is inversely proportional to the energy difference between the interacting orbitals. The main objectives of the work described here are (1) the calculation (using density functional theory methods) of the energies of the valence molecular orbitals in the species EH3 (E = N, P, As or Sb), HEEH (E = C, Si, Ge or Sn), and H2EEH2, (E = C, Si, Ge or Sn) and (2) the correlation of these energies with barriers for planarization or linearization. The calculations suggest an upper limit of about 12 eV energy separation of the interacting levels for SOJT effects to be significant, which is considerably larger than previously thought and implies that SOJT effects may be more common than currently realized.
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Affiliation(s)
- Henry B Wedler
- Department of Chemistry, University of California-Davis, Davis, CA, USA.
| | - Paul Wendelboe
- Department of Chemistry, University of California-Davis, Davis, CA, USA.
| | - Dean J Tantillo
- Department of Chemistry, University of California-Davis, Davis, CA, USA.
| | - Philip P Power
- Department of Chemistry, University of California-Davis, Davis, CA, USA.
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6
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Espinosa Ferao A, García Alcaraz A. Benchmarking the inversion barriers in σ3λ3-phosphorus compounds: a computational study. NEW J CHEM 2020. [DOI: 10.1039/d0nj01237h] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Benchmark study of three mechanisms for inversion at phosphorus, including parametric criteria for classification and analysis of factors affecting barriers.
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Affiliation(s)
- Arturo Espinosa Ferao
- Departamento de Química Orgánica
- Facultad de Química
- Campus de Espinardo
- Universidad de Murcia
- 30100 Murcia
| | - Antonio García Alcaraz
- Departamento de Química Orgánica
- Facultad de Química
- Campus de Espinardo
- Universidad de Murcia
- 30100 Murcia
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7
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Lee K, Blake AV, Tanushi A, McCarthy SM, Kim D, Loria SM, Donahue CM, Spielvogel KD, Keith JM, Daly SR, Radosevich AT. Validating the Biphilic Hypothesis of Nontrigonal Phosphorus(III) Compounds. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201901779] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Kyounghoon Lee
- Department of ChemistryThe University of Iowa Iowa City IA 52242 USA
| | | | - Akira Tanushi
- Department of ChemistryMassachusetts Institute of Technology Cambridge MA 02139 USA
| | - Sean M. McCarthy
- Department of ChemistryNalas Engineering Services, Inc. Centerbook CT 06409 USA
| | - Daniel Kim
- Department of ChemistryColgate University Hamilton NY 13346 USA
| | - Sydney M. Loria
- Department of ChemistryColgate University Hamilton NY 13346 USA
| | | | | | - Jason M. Keith
- Department of ChemistryColgate University Hamilton NY 13346 USA
| | - Scott R. Daly
- Department of ChemistryThe University of Iowa Iowa City IA 52242 USA
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8
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Lee K, Blake AV, Tanushi A, McCarthy SM, Kim D, Loria SM, Donahue CM, Spielvogel KD, Keith JM, Daly SR, Radosevich AT. Validating the Biphilic Hypothesis of Nontrigonal Phosphorus(III) Compounds. Angew Chem Int Ed Engl 2019; 58:6993-6998. [PMID: 30901511 DOI: 10.1002/anie.201901779] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2019] [Revised: 03/21/2019] [Indexed: 11/06/2022]
Abstract
Constraining σ3 -P compounds in nontrigonal, entatic geometries has proven to be an effective strategy for promoting biphilic oxidative addition reactions more typical of transition metals. Although qualitative descriptions of the impact of structure and symmetry on σ3 -P complexes have been proposed, electronic structure variations responsible for biphilic reactivity have yet to be elucidated experimentally. Reported here are P K-edge XANES data and complementary TDDFT calculations for a series of structurally modified P(N)3 complexes that both validate and quantify electronic structure variations proposed to give rise to biphilic reactions at phosphorus. These data are presented alongside experimentally referenced electronic structure calculations that reveal nontrigonal structures predicted to further enhance biphilic reactivity in σ3 -P ligands and catalysts.
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Affiliation(s)
- Kyounghoon Lee
- Department of Chemistry, The University of Iowa, Iowa City, IA, 52242, USA
| | - Anastasia V Blake
- Department of Chemistry, The University of Iowa, Iowa City, IA, 52242, USA
| | - Akira Tanushi
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Sean M McCarthy
- Department of Chemistry, Nalas Engineering Services, Inc., Centerbook, CT, 06409, USA
| | - Daniel Kim
- Department of Chemistry, Colgate University, Hamilton, NY, 13346, USA
| | - Sydney M Loria
- Department of Chemistry, Colgate University, Hamilton, NY, 13346, USA
| | - Courtney M Donahue
- Department of Chemistry, The University of Iowa, Iowa City, IA, 52242, USA
| | - Kyle D Spielvogel
- Department of Chemistry, The University of Iowa, Iowa City, IA, 52242, USA
| | - Jason M Keith
- Department of Chemistry, Colgate University, Hamilton, NY, 13346, USA
| | - Scott R Daly
- Department of Chemistry, The University of Iowa, Iowa City, IA, 52242, USA
| | - Alexander T Radosevich
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
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