1
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Xu H, Chakraborty R, Adak AK, Das A, Yang B, Meier D, Riss A, Reichert J, Narasimhan S, Barth JV, Papageorgiou AC. On-Surface Isomerization of Indigo within 1D Coordination Polymers. Angew Chem Int Ed Engl 2024; 63:e202319162. [PMID: 38235942 DOI: 10.1002/anie.202319162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/10/2024] [Accepted: 01/17/2024] [Indexed: 01/19/2024]
Abstract
Natural products are attractive components to tailor environmentally friendly advanced new materials. We present surface-confined metallosupramolecular engineering of coordination polymers using natural dyes as molecular building blocks: indigo and the related Tyrian purple. Both building blocks yield identical, well-defined coordination polymers composed of (1 dehydroindigo : 1 Fe) repeat units on two different silver single crystal surfaces. These polymers are characterized atomically by submolecular resolution scanning tunnelling microscopy, bond-resolving atomic force microscopy and X-ray photoelectron spectroscopy. On Ag(100) and on Ag(111), the trans configuration of dehydroindigo results in N,O-chelation in the polymer chains. On the more inert Ag(111) surface, the molecules additionally undergo thermally induced isomerization from the trans to the cis configuration and afford N,N- plus O,O-chelation. Density functional theory calculations confirm that the coordination polymers of the cis-isomers on Ag(111) and of the trans-isomers on Ag(100) are energetically favoured. Our results demonstrate post-synthetic linker isomerization in interfacial metal-organic nanosystems.
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Affiliation(s)
- Hongxiang Xu
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Ritam Chakraborty
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
| | - Abhishek Kumar Adak
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
- Current address: The Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, 34151, Trieste, Italy
| | - Arpan Das
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
| | - Biao Yang
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
- Institute of Functional Nano and Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials and Devices, Soochow University, Suzhou, 215123, P. R. China
| | - Dennis Meier
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Alexander Riss
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Joachim Reichert
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Shobhana Narasimhan
- Theoretical Sciences Unit & School of Advanced Materials, Jawaharlal Nehru Centre for Advanced Scientific Research Jakkur, Bangalore, 560054, India
| | - Johannes V Barth
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
| | - Anthoula C Papageorgiou
- Technical University of Munich, TUM School of Natural Sciences, Physics Department E20, James Franck Strasse 1, 85748, Garching, Germany
- Laboratory of Physical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens Panepistimiopolis, 15771, Athens, Greece
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2
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Kaplan G, Seferoğlu Z, Berdnikova DV. Photochromic derivatives of indigo: historical overview of development, challenges and applications. Beilstein J Org Chem 2024; 20:228-242. [PMID: 38352070 PMCID: PMC10862137 DOI: 10.3762/bjoc.20.23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 01/23/2024] [Indexed: 02/16/2024] Open
Abstract
The importance of indigo dyes is constantly increasing with the evolution of novel textile materials and photochromic material technologies. The aim of this review article is to provide a comprehensive overview of the development of photochromic indigo derivatives from the first report on the photochromic N,N'-diacetylindigo in 1954 until now. We begin with the list of historical milestones in the development of photochromic indigo derivatives. Further, we provide a brief description of the synthetic procedures utilised to obtain indigo and its derivatives, outline the structural peculiarities, photophysical and photochemical properties of indigo and proceed with the detailed discussion of the photochromic indigo derivatives. Finally, we highlight the photochromism of the structural isomers of indigo (isoindigo and indirubin) and provide an overview of prospective applications of indigo photoswitches.
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Affiliation(s)
- Gökhan Kaplan
- Department of Chemistry, Faculty of Science, Gazi University, Yenimahalle, Ankara, 06560, Turkey
- Sanko Tekstil İşletmeleri, Sanayi ve Ticaret A.Ş. Isko Sb, Bursa, 16400, Bursa, Turkey
| | - Zeynel Seferoğlu
- Department of Chemistry, Faculty of Science, Gazi University, Yenimahalle, Ankara, 06560, Turkey
- Organische Chemie II, Universität Siegen, Adolf-Reichwein-Str. 2, 57076 Siegen, Germany
| | - Daria V Berdnikova
- Organische Chemie II, Universität Siegen, Adolf-Reichwein-Str. 2, 57076 Siegen, Germany
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3
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Munshi MU, Berden G, Oomens J. Infrared Ion Spectroscopic Characterization of the Gaseous [Co(15-crown-5)(H 2O)] 2+ Complex. J Phys Chem A 2023; 127:7256-7263. [PMID: 37595154 PMCID: PMC10476210 DOI: 10.1021/acs.jpca.3c04241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 08/04/2023] [Indexed: 08/20/2023]
Abstract
We report fingerprint infrared multiple-photon dissociation spectra of the gaseous monohydrated coordination complex of cobalt(II) and the macrocycle 1,4,7,10,13-pentaoxacyclopentadecane (or 15-crown-5), [Co(15-crown-5)(H2O)]2+. The metal-ligand complexes are generated using electrospray ionization, and their IR action spectra are recorded in a quadrupole ion trap mass spectrometer using the free-electron laser FELIX. The electronic structure and chelation motif are derived from spectral comparison with computed vibrational spectra obtained at the density functional theory level. We focus here on the gas-phase structure, addressing the question of doublet versus quartet spin multiplicity and the chelation geometry. We conclude that the gas-phase complex adopts a quartet spin state, excluding contributions of doublet species, and that the chelation geometry is pseudo-octahedral with the six oxygen centers of 15-crown-5 and H2O coordinated to the metal ion. We also address the possible presence of higher-energy conformers based on the IR spectral evidence and calculated thermodynamics.
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Affiliation(s)
| | - Giel Berden
- FELIX
Laboratory, Radboud University, Institute
for Molecules and Materials, Toernooiveld 7, 6525
ED Nijmegen, The
Netherlands
| | - Jos Oomens
- FELIX
Laboratory, Radboud University, Institute
for Molecules and Materials, Toernooiveld 7, 6525
ED Nijmegen, The
Netherlands
- University
of Amsterdam, Science
Park 904, 1098XH Amsterdam, The Netherlands
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4
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Disassembly of Amyloid Fibril with Infrared Free Electron Laser. Int J Mol Sci 2023; 24:ijms24043686. [PMID: 36835098 PMCID: PMC9967569 DOI: 10.3390/ijms24043686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/03/2023] [Accepted: 02/09/2023] [Indexed: 02/15/2023] Open
Abstract
Amyloid fibril causes serious amyloidosis such as neurodegenerative diseases. The structure is composed of rigid β-sheet stacking conformation which makes it hard to disassemble the fibril state without denaturants. Infrared free electron laser (IR-FEL) is an intense picosecond pulsed laser that is oscillated through a linear accelerator, and the oscillation wavelengths are tunable from 3 μm to 100 μm. Many biological and organic compounds can be structurally altered by the mode-selective vibrational excitations due to the wavelength variability and the high-power oscillation energy (10-50 mJ/cm2). We have found that several different kinds of amyloid fibrils in amino acid sequences were commonly disassembled by the irradiation tuned to amide I (6.1-6.2 μm) where the abundance of β-sheet decreased while that of α-helix increased by the vibrational excitation of amide bonds. In this review, we would like to introduce the IR-FEL oscillation system briefly and describe combination studies of experiments and molecular dynamics simulations on disassembling amyloid fibrils of a short peptide (GNNQQNY) from yeast prion and 11-residue peptide (NFLNCYVSGFH) from β2-microglobulin as representative models. Finally, possible applications of IR-FEL for amyloid research can be proposed as a future outlook.
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5
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Jindo M, Nakamura K, Okumura H, Tsukiyama K, Kawasaki T. Application study of infrared free-electron lasers towards the development of amyloidosis therapy. JOURNAL OF SYNCHROTRON RADIATION 2022; 29:1133-1140. [PMID: 36073871 PMCID: PMC9455209 DOI: 10.1107/s1600577522007330] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Accepted: 07/15/2022] [Indexed: 05/27/2023]
Abstract
Amyloidosis is known to be caused by the deposition of amyloid fibrils into various biological tissues; effective treatments for the disease are little established today. An infrared free-electron laser (IR-FEL) is an accelerator-based picosecond-pulse laser having tunable infrared wavelengths. In the current study, the irradiation effect of an IR-FEL was tested on an 11-residue peptide (NFLNCYVSGFH) fibril from β2-microglobulin (β2M) with the aim of applying IR-FELs to amyloidosis therapy. Infrared microspectroscopy (IRM) and scanning electron microscopy showed that a fibril of β2M peptide was clearly dissociated by IR-FEL at 6.1 µm (amide I) accompanied by a decrease of the β-sheet and an increase of the α-helix. No dissociative process was recognized at 6.5 µm (amide II) as well as at 5.0 µm (non-specific wavelength). Equilibrium molecular dynamics simulations indicated that the α-helix can exist stably and the probability of forming interchain hydrogen bonds associated with the internal asparagine residue (N4) is notably reduced compared with other amino acids after the β-sheet is dissociated by amide I specific irradiation. This result implies that N4 plays a key role for recombination of hydrogen bonds in the dissociation of the β2M fibril. In addition, the β-sheet was disrupted at temperatures higher than 340 K while the α-helix did not appear even though the fibril was heated up to 363 K as revealed by IRM. The current study gives solid evidence for the laser-mediated conversion from β-sheet to α-helix in amyloid fibrils at the molecular level.
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Affiliation(s)
- Mikiko Jindo
- Department of Chemistry, Faculty of Science Division I, Tokyo University of Science, 1–3 Kagurazaka, Tokyo 184-8501, Japan
| | - Kazuhiro Nakamura
- Department of Laboratory Sciences, Gunma University, Graduate School of Health Sciences, 3-39-22, Showa-machi, Maebashi, Gunma 371-8511, Japan
| | - Hisashi Okumura
- Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
- Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
- Department of Structural Molecular Science, SOKENDAI (The Graduate University for Advanced Studies), Okazaki, Aichi 444-8787, Japan
| | - Koichi Tsukiyama
- Department of Chemistry, Faculty of Science Division I, Tokyo University of Science, 1–3 Kagurazaka, Tokyo 184-8501, Japan
- IR Free Electron Laser Research Center, Research Institute for Science and Technology, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Takayasu Kawasaki
- IR Free Electron Laser Research Center, Research Institute for Science and Technology, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
- Accelerator Laboratory, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan
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6
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Kanda J, Egami N, Sasamori T, Imayoshi A, Hosoya T, Tsubaki K. Synthesis of Bridged Indigos and Their Thermoisomerization and Photoisomerization Behaviors. J Org Chem 2021; 86:17620-17628. [PMID: 34818023 DOI: 10.1021/acs.joc.1c01726] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Bridged indigos were synthesized by bridging the two nitrogen atoms in the indigo structure with a carbon chain, and their properties were carefully examined. These bridged indigos have intrinsic planar chirality, and the enantiomers were separated using chiral high-performance liquid chromatography. When the chiral bridged indigos were subjected to thermo- and photoisomerization, the corresponding (Z)-indigo was not observed at all, and racemization was observed. This phenomenon is caused by the low activation energy of inversion due to the 1.5 bond order of the double bond of the indigo skeleton and the large energy difference between the ground states of (E)-indigo and (Z)-indigo.
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Affiliation(s)
- Junya Kanda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan
| | - Naoki Egami
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan
| | - Takahiro Sasamori
- Division of Chemistry, Faculty of Pure and Applied Sciences, University of Tsukuba, Tenodai 1-1-1, Tsukuba, Ibaraki 305-8571, Japan
| | - Ayumi Imayoshi
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan
| | - Takashi Hosoya
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan
| | - Kazunori Tsubaki
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto 606-8522, Japan
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7
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Kiss FL, Corbet BP, Simeth NA, Feringa BL, Crespi S. Predicting the substituent effects in the optical and electrochemical properties of N,N'-substituted isoindigos. Photochem Photobiol Sci 2021; 20:927-938. [PMID: 34227039 PMCID: PMC8550769 DOI: 10.1007/s43630-021-00071-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 06/24/2021] [Indexed: 11/30/2022]
Abstract
Isoindigo, the structural isomer of the well-known dye indigo, has seen a major revival recently because of the increasing interest of its use as a potential drug core structure and for the development of organic photovoltaic materials. Highly beneficial for diverse applications are its facile synthesis, straightforward functionalisation and the broad absorption band in the visible range. Moreover, its intrinsic electron deficiency renders isoindigo a promising acceptor structure in bulk heterojunction architectures. Here we present new insights into the substituent effects of N-functionalised isoindigos, developing a reliable and fast in silico screening approach of a library of compounds. Using experimental UV-Vis and electrochemical data increased the accuracy of the TD-DFT method employed. This procedure allowed us to accurately predict the optical and electrochemical properties of N-functionalised isoindigos and the elucidation of the relationship between substituent effects and electronic properties.
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Affiliation(s)
- Ferdinand L Kiss
- Faculty for Science and Engineering, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
- Department Chemie, Ludwig-Maximilians-Universität München, 81377, Munich, Germany
| | - Brian P Corbet
- Faculty for Science and Engineering, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Nadja A Simeth
- Faculty for Science and Engineering, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Ben L Feringa
- Faculty for Science and Engineering, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.
| | - Stefano Crespi
- Faculty for Science and Engineering, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.
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8
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Molino RJEJ, Junio HA. Profiling the Philippine Blue: Liquid chromatography/mass spectrometry-based metabolomics study on Philippine Indigofera. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35:e9037. [PMID: 33369891 DOI: 10.1002/rcm.9037] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 12/22/2020] [Accepted: 12/24/2020] [Indexed: 06/12/2023]
Abstract
RATIONALE High-throughput liquid chromatography/mass spectrometry (LC/MS) analysis presents an interesting platform for natural dyes research. A particular example is the assessment of the dynamic changes in fermentation mixtures of Philippine Indigofera, and in the investigation of commercially available indigo prepared using traditional and optimized methods. METHODS Leaves from Indigofera tinctoria and Indigofera suffruticosa were subjected to methanolic extraction and aqueous fermentation for 48 h. Indigo powders prepared following 2-day and 15-day fermentation were also subjected to profiling using ultra-high-performance liquid chromatography/quadrupole time-of-flight mass spectrometry (UHPLC/QTOF-MS). MS2 spectra were annotated through a library search in the community-curated Global Natural Products Social Molecular Networking (GNPS). Spectra with no library hits in GNPS were annotated by analysis of their fragmentation pathways. RESULTS UHPLC/MS-based detection and fragmentation analysis led to characterization of leucoindigo and the unreported tryptanthrin intermediate, 5a-hydroxy-5,5a-dihydroindolo[2,1-b]quinazoline-6,12-dione, in the fermentation extract of I. tinctoria leaves. Indigo-associated metabolites were absent in an Indigofera specimen in Laguna Province, which explained why it did not produce blue dye. Locally produced indigo was abundant in indigotin and indirubin, differentiated based on product ions with the corresponding predicted fragmentation pattern. The relative intensity of indigotin, however, decreased with the traditional process of extended fermentation to produce indigo. CONCLUSIONS The study is the first to demonstrate simultaneous MS-based analysis of reaction intermediates, indigotin dye, side products, and catabolites on actively transforming fermentation extracts of I. tinctoria. New results include annotated mass spectra for leucoindigo, and for the unreported 5a-hydroxy-5,5a-dihydroindolo[2,1-b]quinazoline-6,12-dione, which is probably an intermediate in tryptranthrin synthesis. The proposed fragmentation schemes could guide the annotation of analogous compounds in complex mixtures.
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Affiliation(s)
- Ralph John Emerson J Molino
- SMPL Institute of Chemistry, College of Science, University of the Philippines Diliman, Quezon City, 1101, Philippines
| | - Hiyas A Junio
- SMPL Institute of Chemistry, College of Science, University of the Philippines Diliman, Quezon City, 1101, Philippines
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9
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Boles GC, Kempkes LJM, Martens J, Berden G, Oomens J, Armentrout PB. Influence of a Hydroxyl Group on the Deamidation and Dehydration Reactions of Protonated Asparagine-Serine Investigated by Combined Spectroscopic, Guided Ion Beam, and Theoretical Approaches. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2021; 32:786-805. [PMID: 33570934 DOI: 10.1021/jasms.0c00468] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Deamidation of asparaginyl (Asn) peptides is a spontaneous post-translational modification that plays a significant role in degenerative diseases and other biological processes under physiological conditions. In the gas phase, deamidation of protonated peptides is a major fragmentation channel upon activation by collision-induced dissociation. Here, we present a full description of the deamidation process from protonated asparagine-serine, [AsnSer+H]+, via infrared (IR) action spectroscopy and threshold collision-induced dissociation (TCID) experiments in combination with theoretical calculations. The IR results demonstrate that deamidation proceeds via bifurcating reaction pathways leading to furanone- and succinimide-type product ion structures, with a population analysis indicating the latter product dominates. Theory demonstrates that nucleophilic attack of the peptidyl amide oxygen onto the Asn side chain leads to furanone formation, whereas nucleophilic attack by the peptidyl amide nitrogen onto the Asn side-chain carbonyl carbon leads to the formation of the succinimide product structure. TCID experiments find that furanone formation has a threshold energy of 145 ± 12 kJ/mol and succinimide formation occurs with a threshold energy of 131 ± 12 kJ/mol, consistent with theoretical energies and with the spectroscopic results indicating that succinimide dominates. The results provide information regarding the inductive and steric effects of the Ser side chain on the deamidation process. The other major channel observed in the TCID experiments of [AsnSer+H]+ is dehydration, where a threshold energy of 104 ± 10 kJ/mol is determined. A complete IR and theoretical analysis of this pathway is also provided. As for deamidation, a bifurcating pathway is found with both dominant oxazoline and minor diketopiperazine products identified. Here, the Ser side chain is directly involved in both pathways.
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Affiliation(s)
- Georgia C Boles
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
| | - Lisanne J M Kempkes
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jonathan Martens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Giel Berden
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
- Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - P B Armentrout
- Department of Chemistry, University of Utah, 315 South 1400 East, Room 2020, Salt Lake City, Utah 84112, United States
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10
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van Geenen FAMG, Kranenburg RF, van Asten AC, Martens J, Oomens J, Berden G. Isomer-Specific Two-Color Double-Resonance IR 2MS 3 Ion Spectroscopy Using a Single Laser: Application in the Identification of Novel Psychoactive Substances. Anal Chem 2021; 93:2687-2693. [PMID: 33470107 PMCID: PMC7859929 DOI: 10.1021/acs.analchem.0c05042] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
![]()
The capability of
an ion trap mass
spectrometer to store ions for
an arbitrary amount of time allows the use of a single infrared (IR)
laser to perform two-color double resonance IR–IR spectroscopic
experiments on mass-to-charge (m/z) selected ions. In this single-laser IR2MS3 scheme, one IR laser frequency is used to remove a selected set
of isomers from the total trapped ion population and the second IR
laser frequency, from the same laser, is used to record the IR spectrum
of the remaining precursor ions. This yields isomer-specific vibrational
spectra of the m/z-selected ions,
which can reveal the structure and identity of the initially co-isolated
isomeric species. The use of a single laser greatly reduces the experimental
complexity of two-color IR2MS3 and enhances
its application in fields employing analytical MS. In this work, we
demonstrate the methodology by acquiring single-laser IR2MS3 spectra in a forensic context, identifying two previously
unidentified isomeric novel psychoactive substances (NPS) from a sample
that was confiscated by the Amsterdam Police.
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Affiliation(s)
- Fred A M G van Geenen
- FELIX Laboratory, Institute for Molecules and Materials, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Ruben F Kranenburg
- Forensic Laboratory, Unit Amsterdam, Dutch National Police, Kabelweg 25, 1014 BA Amsterdam, The Netherlands.,Van't Hoff Institute for Molecular Sciences, University of Amsterdam, P.O. Box 94157, 1090 GD Amsterdam, The Netherlands
| | - Arian C van Asten
- Van't Hoff Institute for Molecular Sciences, University of Amsterdam, P.O. Box 94157, 1090 GD Amsterdam, The Netherlands.,Co van Ledden Hulsebosch Center (CLHC), Amsterdam Center for Forensic Science and Medicine, P.O. Box 94157, 1090 GD Amsterdam, The Netherlands
| | - Jonathan Martens
- FELIX Laboratory, Institute for Molecules and Materials, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
| | - Jos Oomens
- FELIX Laboratory, Institute for Molecules and Materials, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.,Van't Hoff Institute for Molecular Sciences, University of Amsterdam, P.O. Box 94157, 1090 GD Amsterdam, The Netherlands
| | - Giel Berden
- FELIX Laboratory, Institute for Molecules and Materials, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands
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11
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Jia Z, Guan Q, Wang H, Wang X. Theoretical investigation on cis-trans isomerisation of azaphosphatriptycene- based molecular gear. Supramol Chem 2020. [DOI: 10.1080/10610278.2020.1842406] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Zishang Jia
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, PR China
| | - Qiuping Guan
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, PR China
| | - Hailong Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, PR China
| | - Xueye Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, PR China
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