1
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Aroule O, Jarraya M, Zins EL, Hochlaf M. Probing microhydration-induced effects on carbonyl compounds. Phys Chem Chem Phys 2024; 26:22230-22239. [PMID: 39129488 DOI: 10.1039/d4cp01035c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
Abstract
Characterizing the microhydration of organic molecules is a crucial step in understanding many phenomena relevant to atmospheric, biological, and industrial applications. However, its precise experimental and theoretical description remains a challenge. For four organic solutes containing a CO bond, and included in the recent HyDRA challenge [T. L. Fischer, M. Bödecker, A. Zehnacker-Rentien, R. A. Mata and M. A. Suhm, Phys. Chem. Chem. Phys., 2022, 24, 11442-11454.], we performed a detailed study of different monohydrate isomers and their properties; these were cyclooctanone (CON), 1,3-dimethyl-2-imidazolidinon (DMI), methyl lactate (MLA), and 2,2,2-trifluoroacetophenone (TPH) molecules. As reported in the literature, the O-H elongation shift of the water molecule appears to be a good candidate for characterizing complexation-induced effects. We also show that CO elongation shift and UV-vis spectroscopy can be successfully used for these purposes. Besides, we present a comparative analysis of the strengths of non-covalent interactions within these monohydrated complexes based on interpretative tools of quantum chemistry, including topological analysis of electron density (ρ), topological analysis of electron pairing function, and analysis of the core-valence bifurcation index (CVBI), which exhibits a close linear dependency on ρ. Accordingly, a classification of intermolecular water-solute interactions is proposed.
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Affiliation(s)
- Olivier Aroule
- MONARIS UMR 8233 CNRS, Sorbonne Université, 4 place Jussieu, 75252 Paris Cedex 5, France.
| | - Mahmoud Jarraya
- Université Gustave Eiffel, COSYS/IMSE, 5 Bd Descartes 77454, Champs sur Marne, France.
| | - Emilie-Laure Zins
- MONARIS UMR 8233 CNRS, Sorbonne Université, 4 place Jussieu, 75252 Paris Cedex 5, France.
| | - Majdi Hochlaf
- Université Gustave Eiffel, COSYS/IMSE, 5 Bd Descartes 77454, Champs sur Marne, France.
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2
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Chakraborty A, Henkel S, Schwaab G, Havenith M. Structural Characterization of Pyruvic Acid Dimers Formed inside Helium Nanodroplets by Infrared Spectroscopy and Ab Initio Study. J Phys Chem A 2024; 128:5307-5313. [PMID: 38938084 DOI: 10.1021/acs.jpca.4c02203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
The structural arrangements of α-keto acid complexes hold significant interest across various fields of chemistry such as enzyme modeling, drug design, or polymer blending. Herein, we report mass-selective infrared (IR) spectra of pyruvic acid monomers and dimers in the range 1720-1820 cm-1 recorded in helium nanodroplets at 0.37 K. The monomer features IR bands at 1807.1 and 1734.5 cm-1, which are assigned to the carboxylic and ketonic C═O stretching vibrations, respectively. Furthermore, the pyruvic acid dimers generated inside the helium nanodroplets are characterized by carboxylic and ketonic C═O stretch vibrations appearing at 1799.2 and 1737.0 cm-1, respectively. This frequency shift of ±7 cm-1 for both C═O stretching bands from the monomer to the dimer demonstrates that the structural motif of the monomer is maintained upon dimer aggregation in helium nanodroplets. The structural assignments were supported by a comparison of the MP2/aug-cc-pVDZ-predicted harmonic vibrational spectra at the C═O stretching region with the experiments. The global minimum monomer structure with an intramolecular hydrogen bond and its dimer stabilized by both inter- and intramolecular hydrogen bonding interactions reproduce the experimental spectra from the monomer and dimer. This assigned dimer structure lies ca.11 kJ/mol above the corresponding global minimum and is favored in helium nanodroplets due to the long-range realignment of molecules via dipole-dipole interaction, followed by short-range stabilization upon intermolecular hydrogen bond formation. The barrier for reconfiguration of the precooled monomer conformer leading to the formation of the most stable dimer structure is around 58 kJ/mol, which is infeasible at 0.37 K.
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Affiliation(s)
- Arghya Chakraborty
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Stefan Henkel
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Gerhard Schwaab
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Martina Havenith
- Lehrstuhl für Physikalische Chemie II, Ruhr-Universität Bochum, 44801 Bochum, Germany
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3
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Pollet R, Chin W. In silico Investigation of the Thermochemistry and Photoactivity of Pyruvic Acid in an Aqueous Solution of NaCl. Chemistry 2023; 29:e202302225. [PMID: 37539648 DOI: 10.1002/chem.202302225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 08/03/2023] [Accepted: 08/04/2023] [Indexed: 08/05/2023]
Abstract
The photochemistry of oxocarboxylic acids contributes significantly to the complex chemistry occurring in the atmosphere. In this regard, pyruvic acid undergoes photoreactions that lead to many diverse products. The presence of sodium cation near pyruvic acid in an aqueous solution, or its conjugate base in non-acidic conditions, influences the hydration equilibrium and the photosensitivity to UV-visible light of the oxocarboxylic acid. We performed an ab initio metadynamics simulation which serves two purposes: first, it unveils the mechanisms of the reversible hydration reaction between the keto and the diol forms, with a free-energy difference of only 2 kJ/mol at 300 K, which shows the influence of sodium on the keto/diol ratio; second, it provides solvent-shared ion pairing (SSIP) and contact ion pairing (CIP) structures, including Na+ coordinated to carbonyl, for the calculations of the electronic transition energies to an antibonding π* orbital, which sheds light on the photoactivity of these two forms in the actinic region.
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Affiliation(s)
- Rodolphe Pollet
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France
| | - Wutharath Chin
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405, Orsay, France
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4
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Müller S, Giorio C, Borduas-Dedekind N. Tracking the Photomineralization Mechanism in Irradiated Lab-Generated and Field-Collected Brown Carbon Samples and Its Effect on Cloud Condensation Nuclei Abilities. ACS ENVIRONMENTAL AU 2023; 3:164-178. [PMID: 37215437 PMCID: PMC10197166 DOI: 10.1021/acsenvironau.2c00055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 03/02/2023] [Accepted: 03/02/2023] [Indexed: 05/24/2023]
Abstract
Organic aerosols affect the planet's radiative balance by absorbing and scattering light as well as by activating cloud droplets. These organic aerosols contain chromophores, termed brown carbon (BrC), and can undergo indirect photochemistry, affecting their ability to act as cloud condensation nuclei (CCN). Here, we investigated the effect of photochemical aging by tracking the conversion of organic carbon into inorganic carbon, termed the photomineralization mechanism, and its effect on the CCN abilities in four different types of BrC samples: (1) laboratory-generated (NH4)2SO4-methylglyoxal solutions, (2) dissolved organic matter isolate from Suwannee River fulvic acid (SRFA), (3) ambient firewood smoke aerosols, and (4) ambient urban wintertime particulate matter in Padua, Italy. Photomineralization occurred in all BrC samples albeit at different rates, evidenced by photobleaching and by loss of organic carbon up to 23% over a simulated 17.6 h of sunlight exposure. These losses were correlated with the production of CO up to 4% and of CO2 up to 54% of the initial organic carbon mass, monitored by gas chromatography. Photoproducts of formic, acetic, oxalic and pyruvic acids were also produced during irradiation of the BrC solutions, but at different yields depending on the sample. Despite these chemical changes, CCN abilities did not change substantially for the BrC samples. In fact, the CCN abilities were dictated by the salt content of the BrC solution, trumping a photomineralization effect on the CCN abilities for the hygroscopic BrC samples. Solutions of (NH4)2SO4-methylglyoxal, SRFA, firewood smoke, and ambient Padua samples had hygroscopicity parameters κ of 0.6, 0.1, 0.3, and 0.6, respectively. As expected, the SRFA solution with a κ of 0.1 was most impacted by the photomineralization mechanism. Overall, our results suggest that the photomineralization mechanism is expected in all BrC samples and can drive changes in the optical properties and chemical composition of aging organic aerosols.
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Affiliation(s)
- Silvan Müller
- Department
of Environmental Systems Science, ETH Zurich, Zurich 8092, Switzerland
| | - Chiara Giorio
- Yusuf
Hamied Department of Chemistry, University
of Cambridge, Cambridge CB2 1EW, United
Kingdom
- Department
of Chemical Sciences, University of Padova, Padova 35131, Italy
| | - Nadine Borduas-Dedekind
- Department
of Environmental Systems Science, ETH Zurich, Zurich 8092, Switzerland
- Department
of Chemistry, University of British Columbia, Vancouver V6T 1Z1, Canada
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5
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Deal A, Smith AE, Oyala KM, Campolo GH, Rugeley BE, Mose TA, Talley DL, Cooley CB, Rapf RJ. Infrared Reflection-Absorption Spectroscopy of α-Keto Acids at the Air-Water Interface: Effects of Chain Length and Headgroup on Environmentally Relevant Surfactant Films. J Phys Chem A 2023; 127:4137-4151. [PMID: 37103984 PMCID: PMC10184673 DOI: 10.1021/acs.jpca.3c01266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 04/12/2023] [Indexed: 04/28/2023]
Abstract
A variety of organic surfactants are found at air-water interfaces in natural environments, including on the surfaces of aqueous aerosols. The structure and morphology of these organic films can have profound impacts on material transfer between the gas and condensed phases, the optical properties of atmospheric aerosol, and chemical processing at air-water interfaces. Combined, these effects can have significant impacts on climate via radiative forcing, but our understanding of organic films at air-water interfaces is incomplete. Here, we examine the impact of the polar headgroup and alkyl tail length on the structure and morphology of organic monolayers at the air-water interfaces. First, we focus on the substituted carboxylic acids, α-keto acids, using Langmuir isotherms and infrared reflection absorption spectroscopy (IR-RAS) to elucidate key structures and phase behaviors of α-keto acids with a range of surface activities. We show that the structure of α-keto acids, both soluble and insoluble, at water surfaces is a compromise between van der Waals interactions of the hydrocarbon tail and hydrogen bonding interactions involving the polar headgroup. Then, we use this new data set regarding α-keto acid films at water surfaces to examine the role of the polar headgroup on organic films using a similar substituted carboxylic acid (α-hydroxystearic acid), an unsubstituted carboxylic acid (stearic acid), and an alcohol (stearyl alcohol). We show that the polar headgroup and its hydrogen bonding interactions can significantly affect the orientation of amphiphiles at air-water interfaces. Here, we provide side-by-side comparisons of Langmuir isotherms and IR-RA spectra for a set of environmentally relevant organic amphiphiles with a range of alkyl tail lengths and polar headgroup structures.
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Affiliation(s)
- Alexandra
M. Deal
- Department
of Chemistry and Cooperative Institute for Research in Environmental
Sciences, University of Colorado Boulder, Boulder, Colorado 80309, United States
| | - Abigail E. Smith
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Krista M. Oyala
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Giovanna H. Campolo
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Burgess E. Rugeley
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Tim A. Mose
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Denver L. Talley
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Christina B. Cooley
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
| | - Rebecca J. Rapf
- Department
of Chemistry, Trinity University, San Antonio, Texas 78212, United States
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6
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Deal AM, Vaida V. Oxygen Effect on the Ultraviolet-C Photochemistry of Lactic Acid. J Phys Chem A 2023; 127:2936-2945. [PMID: 36962071 DOI: 10.1021/acs.jpca.3c00992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2023]
Abstract
Lactic acid, a small α-hydroxyacid, is ubiquitous in both indoor and outdoor environments. Recently, the photochemistry of lactic acid has garnered interest among the abiotic organic chemistry community as it would have been present in abiotic settings and photoactive with the high-energy solar radiation that would have been available in the low oxygen early Earth environment. Additionally, we propose that the photochemistry of lactic acid is relevant to modern Earth during indoor ultraviolet-C (UVC) sterilization procedures as lactic acid is emitted by humans and is thus prevalent in indoor environments where UVC sterilization is increasingly being used. Here, we study the oxygen effect on the gas phase photolysis of lactic acid using Fourier-transform infrared (FTIR) spectroscopy and isotopically labeled oxygen (18O2). We find that the major products of gas phase lactic acid photolysis are CO2, CO, acetaldehyde, and acetic acid. Furthermore, these products are the same with or without added oxygen, but the partial pressures of produced CO2, CO, and acetaldehyde increase with the amount of added oxygen. Notably, the added oxygen is primarily incorporated into produced CO2 and CO, while little or none is incorporated into acetaldehyde. We combine the results presented here with those in the literature to propose a mechanism for the gas phase photolysis of lactic acid and the role of oxygen in this mechanism. Finally, we compare the output of a krypton-chloride excimer lamp (λ = 222 nm), one of the lamps proposed for UVC sterilization procedures, to the absorption of lactic acid. We show that lactic acid would be photoactive during UVC sterilization procedures, and we use the gas phase results presented here and aqueous lactic acid photolysis results previously published to assess potential byproducts from lactic acid reactions during UVC sterilization procedures.
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Affiliation(s)
- Alexandra M Deal
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States
- Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, Boulder, Colorado 80309, United States
| | - Veronica Vaida
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States
- Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, Boulder, Colorado 80309, United States
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7
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The role of predissociation states in the UV photooxidation of acetylene. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.114373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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8
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Lewis JS, Gaunt AP, Comment A. Photochemistry of pyruvic acid is governed by photo-induced intermolecular electron transfer through hydrogen bonds. Chem Sci 2022; 13:11849-11855. [PMID: 36320913 PMCID: PMC9580485 DOI: 10.1039/d2sc03038a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 09/22/2022] [Indexed: 11/24/2022] Open
Abstract
Despite more than 85 years of research, the mechanism behind the photodecarboxylation of pyruvic acid remains elusive. Most studies focused on the gas and liquid phase of diluted solutions of pyruvic acid to understand the impact of sun light on the degradation of this molecule in the atmosphere. By analyzing concentrated supercooled solutions at 77 K, we demonstrate that instead of decarboxylating, the pyruvic acid molecule plays the role of electron donor and transfers an electron to an acceptor molecule that subsequently degrades to form CO2. We show that this electron transfer occurs via hydrogen bonding and that in aqueous solutions of pyruvic acid, the hydrated form is the electron acceptor. These findings demonstrate that photo-induced electron transfer via hydrogen bonding can occur between two simple carboxylic acids and that this mechanism governs the photochemistry of pyruvic acid, providing unexplored alternative pathways for the decarboxylation of photo-inactive molecules. When supercooled pyruvic acid is photo-irradiated, a radical detectable by ESR forms following the transfer of an electron from a molecule in its keto form to a molecule in its hydrated form. The latter subsequently degrades to CO2 and acetic acid.![]()
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Affiliation(s)
- Jennifer S. Lewis
- Cancer Research UK Cambridge Institute, University of CambridgeRobinson WayCambridgeCB2 0REUK
| | - Adam P. Gaunt
- Cancer Research UK Cambridge Institute, University of CambridgeRobinson WayCambridgeCB2 0REUK
| | - Arnaud Comment
- Cancer Research UK Cambridge Institute, University of CambridgeRobinson WayCambridgeCB2 0REUK,General Electric HealthcarePollards Wood, Nightingales Lane, Chalfont St GilesHP8 4SPUK
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9
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Cao W, Hu Z, Peng X, Sun H, Sun Z, Wang XB. Annihilating Actinic Photochemistry of the Pyruvate Anion by One and Two Water Molecules. J Am Chem Soc 2022; 144:19317-19325. [PMID: 36166618 DOI: 10.1021/jacs.2c06319] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Photochemical behaviors of pyruvic acid in multiple phases have been extensively studied, while those of its conjugate base, the pyruvate anion (CH3COCOO-, PA-) are less understood and remain contradictory in gaseous versus aqueous phases. Here in this article, we report a joint experimental and theoretical study combining cryogenic, wavelength-resolved negative ion photoelectron spectroscopy (NIPES) and high-level quantum chemical computations to investigate PA- actinic photochemistry and its dependence on microsolvation in the gas phase. PA-·nH2O (n = 0-5) clusters were generated and characterized, with their low-lying isomers identified. NIPES conducted at multiple wavelengths across the PA- actinic regime revealed the PA- photochemistry extremely sensitive to its hydration extent. While bare PA- anions exhibit active photoinduced dissociations that generate the acetyl (CH3CO-), methide (CH3-) anions, their corresponding radicals, and slow electrons, one single attached water molecule results in significant suppression with a subsequent second water being able to completely block all dissociation pathways, effectively annihilating all PA- photochemical reactivities. The underlying dissociation mechanisms of PA-·nH2O (n = 0-2) clusters are proposed involving nπ* excitation, dehydration, decarboxylation, and further CO loss. Since the photoexcited dihydrate does not have sufficient energy to overcome the full dehydration barrier before PA- could fragmentate, the PA- dissociation pathway is completely blocked, with the energy most likely released via loss of one water and internal electronic and vibrational relaxations. The insight unraveled in this work provides a much-needed critical link to connect the seemingly conflicting PA- actinic chemistry between the gas and condensed phases.
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Affiliation(s)
- Wenjin Cao
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Xiaogai Peng
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Haitao Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China.,NYU-ECNU Center for Computational Chemistry at NYU Shanghai, Shanghai 200062, China.,Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Zhenrong Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China.,Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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10
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Miller TM, Wiens JP, Viggiano AA, Ard SG, Shuman NS. Thermal Electron Attachment to Pyruvic Acid, Thermal Detachment from the Parent Anion, and the Electron Affinity of Pyruvic Acid. J Phys Chem A 2022; 126:5545-5551. [PMID: 35951543 DOI: 10.1021/acs.jpca.2c04036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The kinetics of electron attachment to pyruvic acid (CH3COCOOH) and thermal detachment from the resulting parent anion were measured from 300-515 K using a flowing afterglow─Langmuir probe apparatus. An adiabatic electron affinity (EA) for pyruvic acid was derived, 0.84 ± 0.02 eV. Electron attachment rate constants to pyruvic acid of 2.1 × 10-8 and 1.2 × 10-8 were measured at 300 and 400 K, respectively. Rate constants at higher temperatures are less well-defined due to possible contributions from attachment to zymonic open ketone, an endemic impurity in pyruvic acid. Similarly, unimolecular detachment rates are complicated by secondary proton transfer reaction of the pyruvic acid anion with pyruvic acid to yield an 87 Da anion. The possible contributions from these chemistries are considered, and in all cases the equilibrium constant between attachment and detachment remains well-defined, allowing for determination of the EA.
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Affiliation(s)
- Thomas M Miller
- Boston College Institute for Scientific Research, Boston, Massachusetts 02549, United States
| | - Justin P Wiens
- Boston College Institute for Scientific Research, Boston, Massachusetts 02549, United States
| | - Albert A Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico 87117, United States
| | - Shaun G Ard
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico 87117, United States
| | - Nicholas S Shuman
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico 87117, United States
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11
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Hammami F, Issaoui N. A DFT Study of the Hydrogen Bonded Structures of Pyruvic Acid–Water Complexes. FRONTIERS IN PHYSICS 2022. [DOI: 10.3389/fphy.2022.901736] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The molecular geometries of the possible conformations of pyruvic acid–water complexes (PA-(H2O)n = 1–4) have been fully optimized at DFT/B3LYP/6-311G++ (d, p) levels of calculation. Among several optimized molecular clusters, we present here the most stable molecular arrangements obtained when one, two, three, and four water molecules are hydrogen-bonded to a central pyruvic acid molecule. Appropriate topological and geometrical parameters are considered primary indicators of H-bond strength. Atoms in molecules analysis shows that pyruvic acid can form a ring structure with water, and the molecular structures are stabilized by both strong O–H⋅⋅⋅O and C–H⋅⋅⋅O hydrogen bonds. In large clusters, classical O–H⋅⋅⋅O hydrogen bonds still exist between water molecules, and a cage-like structure is built around some parts of the central molecule of pyruvic acid.
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12
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Kappes K, Frandsen BN, Vaida V. Infrared spectroscopy of 2-oxo-octanoic acid in multiple phases. Phys Chem Chem Phys 2022; 24:6757-6768. [PMID: 35237773 DOI: 10.1039/d1cp05345k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Alpha-keto acids are environmentally and biologically relevant species whose chemistry has been shown to be influenced by their local environment. Vibrational spectroscopy provides useful ways to probe the potential inter- and intramolecular interactions available to them in several phases. We measure and compare the IR spectra of 2-oxo-octanoic acid (2OOA) in the gas phase, solid phase, and at the air-water interface. With theoretical support, we assign many of the vibrational modes in each of the spectra. In the gas phase, two types of conformers are identified and distinguished, with the intramolecularly H-bonded form being the dominant type, while the second conformer type identified does not have an intramolecular hydrogen bond. The van der Waals interactions between molecules in solid 2OOA manifest C-H and CO vibrations lower in energy than in the gas phase and we propose an intermolecular hydrogen bonding scheme for the solid phase. At the air-water interface the hydrocarbon tails of 2OOA do interact with each other while the carbonyls appear to interact with water in the subphase, but not with neighboring 2OOA as might be expected of a closely packed surfactant film.
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Affiliation(s)
- Keaten Kappes
- Department of Chemistry, University of Colorado-Boulder, UCB 215, Boulder, CO 80309, USA. .,Cooperative Institute for Research in Environmental Sciences, University of Colorado-Boulder, UCB 216, Boulder, CO 80309, USA
| | - Benjamin N Frandsen
- Department of Chemistry, University of Colorado-Boulder, UCB 215, Boulder, CO 80309, USA. .,Cooperative Institute for Research in Environmental Sciences, University of Colorado-Boulder, UCB 216, Boulder, CO 80309, USA
| | - Veronica Vaida
- Department of Chemistry, University of Colorado-Boulder, UCB 215, Boulder, CO 80309, USA. .,Cooperative Institute for Research in Environmental Sciences, University of Colorado-Boulder, UCB 216, Boulder, CO 80309, USA
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13
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Prlj A, Marsili E, Hutton L, Hollas D, Shchepanovska D, Glowacki DR, Slavíček P, Curchod BFE. Calculating Photoabsorption Cross-Sections for Atmospheric Volatile Organic Compounds. ACS EARTH & SPACE CHEMISTRY 2022; 6:207-217. [PMID: 35087992 PMCID: PMC8785186 DOI: 10.1021/acsearthspacechem.1c00355] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 11/25/2021] [Accepted: 12/03/2021] [Indexed: 05/30/2023]
Abstract
Characterizing the photochemical reactivity of transient volatile organic compounds (VOCs) in our atmosphere begins with a proper understanding of their abilities to absorb sunlight. Unfortunately, the photoabsorption cross-sections for a large number of transient VOCs remain unavailable experimentally due to their short lifetime or high reactivity. While structure-activity relationships (SARs) have been successfully employed to estimate the unknown photoabsorption cross-sections of VOCs, computational photochemistry offers another promising strategy to predict not only the vertical electronic transitions of a given molecule but also the width and shape of the bands forming its absorption spectrum. In this work, we focus on the use of the nuclear ensemble approach (NEA) to determine the photoabsorption cross-section of four exemplary VOCs, namely, acrolein, methylhydroperoxide, 2-hydroperoxy-propanal, and (microsolvated) pyruvic acid. More specifically, we analyze the influence that different strategies for sampling the ground-state nuclear density-Wigner sampling and ab initio molecular dynamics with a quantum thermostat-can have on the simulated absorption spectra. We highlight the potential shortcomings of using uncoupled harmonic modes within Wigner sampling of nuclear density to describe flexible or microsolvated VOCs and some limitations of SARs for multichromophoric VOCs. Our results suggest that the NEA could constitute a powerful tool for the atmospheric community to predict the photoabsorption cross-section for transient VOCs.
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Affiliation(s)
- Antonio Prlj
- Department
of Chemistry, Durham University, Durham DH1 3LE, U.K.
| | - Emanuele Marsili
- Department
of Chemistry, Durham University, Durham DH1 3LE, U.K.
| | - Lewis Hutton
- Department
of Chemistry, Durham University, Durham DH1 3LE, U.K.
| | - Daniel Hollas
- Department
of Chemistry, Durham University, Durham DH1 3LE, U.K.
- Department
of Physical Chemistry, University of Chemistry
and Technology, Prague, Technická 5, Prague 16628, Czech Republic
| | - Darya Shchepanovska
- Centre
for Computational Chemistry, School of Chemistry, University of Bristol, Bristol BS8 1TH, U.K.
| | - David R. Glowacki
- ArtSci
International Foundation, 5th Floor Mariner House, Bristol BS1 4QD, U.K.
- CiTIUS
Intelligent Technologies Research Centre, Rúa de Jenaro de La Fuente, s/n, Santiago de Compostela 15705, A Coruña, Spain
| | - Petr Slavíček
- Department
of Physical Chemistry, University of Chemistry
and Technology, Prague, Technická 5, Prague 16628, Czech Republic
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14
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Deal AM, Frandsen BN, Vaida V. Lactic acid photochemistry following excitation of S
0
to S
1
at 220 to 250 nm. J PHYS ORG CHEM 2022. [DOI: 10.1002/poc.4316] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Alexandra M. Deal
- Department of Chemistry and Cooperative Institute for Research in Environmental Sciences University of Colorado Boulder Boulder CO USA
| | - Benjamin N. Frandsen
- Department of Chemistry and Cooperative Institute for Research in Environmental Sciences University of Colorado Boulder Boulder CO USA
| | - Veronica Vaida
- Department of Chemistry and Cooperative Institute for Research in Environmental Sciences University of Colorado Boulder Boulder CO USA
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15
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Barquilla MDP, Mayes ML. Role of hydrogen bonding in bulk aqueous phase decomposition, complexation, and covalent hydration of pyruvic acid. Phys Chem Chem Phys 2022; 24:25151-25170. [DOI: 10.1039/d2cp03579k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The behavior of hydrogen bonding changes between the gas and aqueous phase, altering the mechanisms of various pyruvic acid processes and consequently affecting the aerosol formation in different environments.
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Affiliation(s)
- Michael Dave P. Barquilla
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, MA 02747, USA
| | - Maricris L. Mayes
- Department of Chemistry and Biochemistry, University of Massachusetts Dartmouth, North Dartmouth, MA 02747, USA
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16
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Jarraya M, Bellili A, Barreau L, Cubaynes D, Garcia GA, Poisson L, Hochlaf M. Probing the dynamics of the photo-induced decarboxylation of neutral and ionic pyruvic acid. Faraday Discuss 2022; 238:266-294. [DOI: 10.1039/d2fd00023g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dynamics of the electronically excited pyruvic acid (PA) and of its unimolecular decomposition upon single photon ionization are investigated by means of a table top fs laser and VUV...
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17
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Aqueous Photochemistry of 2-Oxocarboxylic Acids: Evidence, Mechanisms, and Atmospheric Impact. Molecules 2021; 26:molecules26175278. [PMID: 34500711 PMCID: PMC8433822 DOI: 10.3390/molecules26175278] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 08/27/2021] [Accepted: 08/29/2021] [Indexed: 11/17/2022] Open
Abstract
Atmospheric organic aerosols play a major role in climate, demanding a better understanding of their formation mechanisms by contributing multiphase chemical reactions with the participation of water. The sunlight driven aqueous photochemistry of small 2-oxocarboxylic acids is a potential major source of organic aerosol, which prompted the investigations into the mechanisms of glyoxylic acid and pyruvic acid photochemistry reviewed here. While 2-oxocarboxylic acids can be contained or directly created in the particles, the majorities of these abundant and available molecules are in the gas phase and must first undergo the surface uptake process to react in, and on the surface, of aqueous particles. Thus, the work also reviews the acid-base reaction that occurs when gaseous pyruvic acid meets the interface of aqueous microdroplets, which is contrasted with the same process for acetic acid. This work classifies relevant information needed to understand the photochemistry of aqueous pyruvic acid and glyoxylic acid and motivates future studies based on reports that use novel strategies and methodologies to advance this field.
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18
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Pollet R, Chin W. Reversible Hydration of α-Dicarbonyl Compounds from Ab Initio Metadynamics Simulations: Comparison between Pyruvic and Glyoxylic Acids in Aqueous Solutions. J Phys Chem B 2021; 125:2942-2951. [PMID: 33725456 DOI: 10.1021/acs.jpcb.0c09748] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Glyoxylic and pyruvic oxoacids are widely available in the atmosphere as gas-phase clusters and particles or in wet aerosols. In aqueous conditions, they undergo interconversion between the unhydrated oxo and gem-diol forms, where two hydroxyl groups replace the carbonyl group. We here examine the hydration equilibrium of glyoxylic and pyruvic acids with first-principles simulations in water at ambient conditions using ab initio metadynamics to reconstruct the corresponding free-energy landscapes. The main results are as follows: (i) our simulations reveal the high conformational diversity of these species in aqueous solutions. (ii) We show that gem-diol is strongly favored in water compared to its oxo counterpart by 29 and 16 kJ/mol for glyoxylic and pyruvic acids, respectively. (iii) From our atomic-scale simulations, we present new insights into the reaction mechanisms with a special focus on hydrogen-bond arrangements and the electronic structure of the transition state.
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Affiliation(s)
- Rodolphe Pollet
- NIMBE, Université Paris-Saclay, CEA, CNRS, 91191 Gif-sur-Yvette, France
| | - Wutharath Chin
- Institut des Sciences Moléculaires d'Orsay, Université Paris-Saclay, CNRS, 91405 Orsay, France
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19
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Church JR, Vaida V, Skodje RT. Kinetic Study of Gas-Phase Reactions of Pyruvic Acid with HO 2. J Phys Chem A 2021; 125:2232-2242. [PMID: 33705144 DOI: 10.1021/acs.jpca.0c10475] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Gas-phase reactions between pyruvic acid (PA) and HO2 radicals were examined using ab initio quantum chemistry and transition state theory. The rate coefficients were determined over a temperature range of 200-400 K including tunneling contributions. Six potential reaction pathways were identified. The two hydrogen abstraction reactions yielding the H2O2 product were found to have high barriers. The HO2 radical was also found to have a catalytic effect on the intramolecular hydrogen transfer reactions occurring by three distinct routes. These hydrogen-shift reactions are very interesting mechanistically although they are highly endothermic. The only reaction that contributes significantly to the consumption of PA is a multistep pathway involving a peroxy-radical intermediate, PA + HO2 → CH3COOH + OH + CO2. This exothermic process has potential atmospheric relevance because it produces an OH radical as a product. Atmospheric models currently have difficulty predicting accurate OH concentrations for certain atmospheric conditions, such as environments free of NOx and the nocturnal boundary layer. Reactions of this sort, although not necessary with PA, may account for a portion of this deficit. The present study helps settle the issue of the relative roles of reaction and photolysis in consumption of PA in the troposphere.
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Affiliation(s)
- Jonathan R Church
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
| | - Veronica Vaida
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
| | - Rex T Skodje
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
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20
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Samanta BR, Fernando R, Rösch D, Reisler H, Osborn DL. Primary photodissociation mechanisms of pyruvic acid on S1: observation of methylhydroxycarbene and its chemical reaction in the gas phase. Phys Chem Chem Phys 2021; 23:4107-4119. [DOI: 10.1039/d0cp06424f] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Following S1 ← S0 excitation at 351 nm, pyruvic acid dissociates mainly into methylhydroxycarbene (MHC) and CO2. Some MHC molecules isomerize to more stable acetaldehyde and vinyl alcohol; the remaining MHC is stabilized and reacts bimolecularly.
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Affiliation(s)
- B. R. Samanta
- Department of Chemistry
- University of Southern California
- Los Angeles
- USA
| | - R. Fernando
- Department of Chemistry
- University of Southern California
- Los Angeles
- USA
| | - D. Rösch
- Combustion Research Facility
- Sandia National Laboratories
- Livermore
- USA
| | - H. Reisler
- Department of Chemistry
- University of Southern California
- Los Angeles
- USA
| | - D. L. Osborn
- Combustion Research Facility
- Sandia National Laboratories
- Livermore
- USA
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21
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Frandsen BN, Deal AM, Lane JR, Vaida V. Lactic Acid Spectroscopy: Intra- and Intermolecular Interactions. J Phys Chem A 2020; 125:218-229. [PMID: 33377780 DOI: 10.1021/acs.jpca.0c09341] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Lactic acid, a relevant molecule in biology and the environment, is an α-hydroxy acid with a high propensity to form hydrogen bonds, both internally and to other hydrogen-bond-accepting molecules. This work includes the novel recording of infrared spectra of gas-phase lactic acid using Fourier transform infrared spectroscopy, and the vibrational absorption features of lactic acid are assigned with the aid of computationally simulated vibrational spectra with anharmonic corrections. Theoretical chemistry methods are used to relate intramolecular hydrogen-bond strengths to the relative stability of lactic acid conformers. The formation of hydrogen-bonded lactic acid dimers and 1:1 water complexes is investigated by simulated vibrational spectra and calculated thermodynamic parameters for the lactic acid monomer and dimer and its water complex in the gas phase. The results of this study are discussed in the context of environmental chemistry with an emphasis on indoor environments.
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Affiliation(s)
- Benjamin N Frandsen
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States.,Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
| | - Alexandra M Deal
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States.,Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
| | - Joseph R Lane
- School of Science, University of Waikato, Private Bag 3105, Hamilton 3240, New Zealand
| | - Veronica Vaida
- Department of Chemistry, University of Colorado Boulder, Boulder, Colorado 80309, United States.,Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, UCB 216, Boulder, Colorado 80309, United States
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22
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Shemesh D, Luo M, Grassian VH, Gerber RB. Absorption spectra of pyruvic acid in water: insights from calculations for small hydrates and comparison to experiment. Phys Chem Chem Phys 2020; 22:12658-12670. [DOI: 10.1039/d0cp01810d] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This study shows that small hydrate models including the roles of both neutral and deprotonated speciated forms provide a good quantitative description and a microscopic interpretation of the experimental spectrum of pyruvic acid in aqueous solution.
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Affiliation(s)
- Dorit Shemesh
- Institute of Chemistry
- Fritz Haber Research Center
- Hebrew University of Jerusalem
- Jerusalem 91904
- Israel
| | - Man Luo
- Department of Chemistry
- University of California
- San Diego
- USA
| | | | - R. Benny Gerber
- Institute of Chemistry
- Fritz Haber Research Center
- Hebrew University of Jerusalem
- Jerusalem 91904
- Israel
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