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For: Johnston AJ, Zhang YR, Busch S, Pardo LC, Imberti S, McLain SE. Amphipathic solvation of indole: implications for the role of tryptophan in membrane proteins. J Phys Chem B 2015;119:5979-87. [PMID: 25893741 DOI: 10.1021/acs.jpcb.5b02476] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Chiramba C, Möller DS, Lorenz CD, Chirombo RR, Mason AJ, Bester MJ, Gaspar ARM. Tryptophan End-Tagging Confers Antifungal Activity on a Tick-Derived Peptide by Triggering Reactive Oxygen Species Production. ACS OMEGA 2024;9:15556-15572. [PMID: 38585074 PMCID: PMC10993377 DOI: 10.1021/acsomega.4c00478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 02/26/2024] [Accepted: 03/07/2024] [Indexed: 04/09/2024]
2
Venianakis T, Siskos M, Papamokos G, Gerothanassis IP. NMR and DFT studies of monounsaturated and ω-3 polyunsaturated free fatty acids in the liquid state reveal a novel atomistic structural model of DHA. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
3
Hammond OS, Atri R, Bowron DT, Edler KJ. Neutron Diffraction Study of Indole Solvation in Deep Eutectic Systems of Choline Chloride, Malic Acid, and Water. Chemistry 2022;28:e202200566. [PMID: 35510678 PMCID: PMC9400976 DOI: 10.1002/chem.202200566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Indexed: 11/09/2022]
4
Terban MW, Billinge SJL. Structural Analysis of Molecular Materials Using the Pair Distribution Function. Chem Rev 2022;122:1208-1272. [PMID: 34788012 PMCID: PMC8759070 DOI: 10.1021/acs.chemrev.1c00237] [Citation(s) in RCA: 54] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Indexed: 12/16/2022]
5
Nasri Z, Memari S, Wenske S, Clemen R, Martens U, Delcea M, Bekeschus S, Weltmann K, von Woedtke T, Wende K. Singlet-Oxygen-Induced Phospholipase A2 Inhibition: A Major Role for Interfacial Tryptophan Dioxidation. Chemistry 2021;27:14702-14710. [PMID: 34375468 PMCID: PMC8596696 DOI: 10.1002/chem.202102306] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Indexed: 11/16/2022]
6
Pal S, Chattopadhyay A. Hydration Dynamics in Biological Membranes: Emerging Applications of Terahertz Spectroscopy. J Phys Chem Lett 2021;12:9697-9709. [PMID: 34590862 DOI: 10.1021/acs.jpclett.1c02576] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
7
Tryptophan, an Amino-Acid Endowed with Unique Properties and Its Many Roles in Membrane Proteins. CRYSTALS 2021. [DOI: 10.3390/cryst11091032] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
8
Lee SY, Chen F, Lee TY. Tryptamine-functionalized magnetic nanoparticles for highly sensitive detection of Salmonella typhimurium. Analyst 2021;146:2559-2566. [PMID: 33899066 DOI: 10.1039/d0an02458a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
9
Urea-water solvation of protein side chain models. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113191] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
10
Joodaki F, Martin LM, Greenfield ML. Planarity and out-of-plane vibrational modes of tryptophan and tyrosine in biomolecular modeling. Phys Chem Chem Phys 2019;21:23943-23965. [PMID: 31596287 DOI: 10.1039/c9cp04798k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
11
Basma NS, Headen TF, Shaffer MSP, Skipper NT, Howard CA. Local Structure and Polar Order in Liquid N-Methyl-2-pyrrolidone (NMP). J Phys Chem B 2018;122:8963-8971. [DOI: 10.1021/acs.jpcb.8b08020] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
12
Steinke N, Genina A, Gillams RJ, Lorenz CD, McLain SE. Proline and Water Stabilization of a Universal Two-Step Folding Mechanism for β-Turn Formation in Solution. J Am Chem Soc 2018;140:7301-7312. [DOI: 10.1021/jacs.8b03643] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
13
Rhys NH, Al-Badri MA, Ziolek RM, Gillams RJ, Collins LE, Lawrence MJ, Lorenz CD, McLain SE. On the solvation of the phosphocholine headgroup in an aqueous propylene glycol solution. J Chem Phys 2018;148:135102. [DOI: 10.1063/1.5024850] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
14
Mukherjee D, Ortiz Rodriguez LI, Hilaire MR, Troxler T, Gai F. 7-Cyanoindole fluorescence as a local hydration reporter: application to probe the microheterogeneity of nine water-organic binary mixtures. Phys Chem Chem Phys 2018;20:2527-2535. [PMID: 29313858 DOI: 10.1039/c7cp07160d] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
15
Ingram DJ, Headen TF, Skipper NT, Callear SK, Billing M, Sella A. Dihydrogen vs. hydrogen bonding in the solvation of ammonia borane by tetrahydrofuran and liquid ammonia. Phys Chem Chem Phys 2018;20:12200-12209. [DOI: 10.1039/c7cp08220g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
16
Graziano G. Comment on “On the positional and orientational order of water and methanol around indole: a study on the microscopic origin of solubility” Phys. Chem. Chem. Phys., 2016, 18, 23006. Phys Chem Chem Phys 2018;20:2113-2115. [DOI: 10.1039/c7cp03698a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
17
Biondi B, Peggion C, De Zotti M, Pignaffo C, Dalzini A, Bortolus M, Oancea S, Hilma G, Bortolotti A, Stella L, Pedersen JZ, Syryamina VN, Tsvetkov YD, Dzuba SA, Toniolo C, Formaggio F. Conformational properties, membrane interaction, and antibacterial activity of the peptaibiotic chalciporin A: Multitechnique spectroscopic and biophysical investigations on the natural compound and labeled analogs. Biopolymers 2017;110. [PMID: 29127716 DOI: 10.1002/bip.23083] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Revised: 10/06/2017] [Accepted: 10/15/2017] [Indexed: 02/28/2024]
18
Phenylalanine residues act as membrane anchors in the antimicrobial action of Aurein 1.2. Biointerphases 2017;12:05G605. [PMID: 29078702 DOI: 10.1116/1.4995674] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
19
Falcone N, Basak S, Dong B, Syed J, Ferranco A, Lough A, She Z, Kraatz HB. A Ferrocene-Tryptophan Conjugate: The Role of the Indolic Nitrogen in Supramolecular Assembly. Chempluschem 2017;82:1282-1289. [DOI: 10.1002/cplu.201700407] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Indexed: 12/11/2022]
20
Szala-Bilnik J, Falkowska M, Bowron DT, Hardacre C, Youngs TGA. The Structure of Ethylbenzene, Styrene and Phenylacetylene Determined by Total Neutron Scattering. Chemphyschem 2017;18:2541-2548. [PMID: 28672104 PMCID: PMC5811833 DOI: 10.1002/cphc.201700393] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 06/30/2017] [Indexed: 11/10/2022]
21
Duboué-Dijon E, Mason PE, Fischer HE, Jungwirth P. Changes in the hydration structure of imidazole upon protonation: Neutron scattering and molecular simulations. J Chem Phys 2017. [DOI: 10.1063/1.4982937] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
22
Maier JM, Li P, Vik EC, Yehl CJ, Strickland SMS, Shimizu KD. Measurement of Solvent OH−π Interactions Using a Molecular Balance. J Am Chem Soc 2017;139:6550-6553. [DOI: 10.1021/jacs.7b02349] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
23
On the hydration and conformation of cocaine in solution. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.03.040] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
24
Gillams RJ, Lorenz CD, McLain SE. Comparative atomic-scale hydration of the ceramide and phosphocholine headgroup in solution and bilayer environments. J Chem Phys 2017;144:225101. [PMID: 27306021 DOI: 10.1063/1.4952444] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
25
Romero-Romero S, Gomez Lagunas F, Balleza D. Side chain flexibility and coupling between the S4-S5 linker and the TRP domain in thermo-sensitive TRP channels: Insights from protein modeling. Proteins 2017;85:630-646. [PMID: 28066924 DOI: 10.1002/prot.25243] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Revised: 12/01/2016] [Accepted: 01/03/2017] [Indexed: 11/11/2022]
26
Silva-Santisteban A, Steinke N, Johnston AJ, Ruiz GN, Carlos Pardo L, McLain SE. On the structure of prilocaine in aqueous and amphiphilic solutions. Phys Chem Chem Phys 2017;19:12665-12673. [DOI: 10.1039/c7cp01723e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
27
Maugeri L, Busch S, McLain SE, Pardo LC, Bruni F, Ricci MA. Structure-activity relationships in carbohydrates revealed by their hydration. Biochim Biophys Acta Gen Subj 2016;1861:1486-1493. [PMID: 28011302 DOI: 10.1016/j.bbagen.2016.12.017] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2016] [Revised: 12/13/2016] [Accepted: 12/17/2016] [Indexed: 11/25/2022]
28
Lenton S, Walsh DL, Rhys NH, Soper AK, Dougan L. Structural evidence for solvent-stabilisation by aspartic acid as a mechanism for halophilic protein stability in high salt concentrations. Phys Chem Chem Phys 2016;18:18054-62. [PMID: 27327567 DOI: 10.1039/c6cp02684b] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
29
Zhang W, Markiewicz BN, Doerksen RS, Smith AB, Gai F. C≡N stretching vibration of 5-cyanotryptophan as an infrared probe of protein local environment: what determines its frequency? Phys Chem Chem Phys 2016;18:7027-34. [PMID: 26343769 PMCID: PMC4775302 DOI: 10.1039/c5cp04413h] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
30
Markiewicz BN, Mukherjee D, Troxler T, Gai F. Utility of 5-Cyanotryptophan Fluorescence as a Sensitive Probe of Protein Hydration. J Phys Chem B 2016;120:936-44. [PMID: 26783936 DOI: 10.1021/acs.jpcb.5b12233] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
31
Steinke N, Gillams RJ, Pardo LC, Lorenz CD, McLain SE. Atomic scale insights into urea–peptide interactions in solution. Phys Chem Chem Phys 2016;18:3862-70. [DOI: 10.1039/c5cp06646h] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
32
Sridhar A, Johnston AJ, Varathan L, McLain SE, Biggin PC. The solvation structure of alprazolam. Phys Chem Chem Phys 2016;18:22416-25. [DOI: 10.1039/c6cp02645a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
33
Henao A, Johnston AJ, Guàrdia E, McLain SE, Pardo LC. On the positional and orientational order of water and methanol around indole: a study on the microscopic origin of solubility. Phys Chem Chem Phys 2016;18:23006-16. [DOI: 10.1039/c6cp04183c] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
34
Johnston AJ, Busch S, Pardo LC, Callear SK, Biggin PC, McLain SE. On the atomic structure of cocaine in solution. Phys Chem Chem Phys 2016;18:991-9. [DOI: 10.1039/c5cp06090g] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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