1
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Gabriel JP, Horstmann R, Tress M. Local and global expansivity in water. J Chem Phys 2024; 160:234502. [PMID: 38884401 DOI: 10.1063/5.0203924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Accepted: 05/30/2024] [Indexed: 06/18/2024] Open
Abstract
The supra-molecular structure of a liquid is strongly connected to its dynamics, which in turn control macroscopic properties such as viscosity. Consequently, detailed knowledge about how this structure changes with temperature is essential to understand the thermal evolution of the dynamics ranging from the liquid to the glass. Here, we combine infrared spectroscopy (IR) measurements of the hydrogen (H) bond stretching vibration of water with molecular dynamics simulations and employ a quantitative analysis to extract the inter-molecular H-bond length in a wide temperature range of the liquid. The extracted expansivity of this H-bond differs strongly from that of the average nearest neighbor distance of oxygen atoms obtained through a common conversion of mass density. However, both properties can be connected through a simple model based on a random loose packing of spheres with a variable coordination number, which demonstrates the relevance of supra-molecular arrangement. Furthermore, the exclusion of the expansivity of the inter-molecular H-bonds reveals that the most compact molecular arrangement is formed in the range of ∼316-331K (i.e., above the density maximum) close to the temperature of several pressure-related anomalies, which indicates a characteristic point in the supra-molecular arrangement. These results confirm our earlier approach to deduce inter-molecular H-bond lengths via IR in polyalcohols [Gabriel et al. J. Chem. Phys. 154, 024503 (2021)] quantitatively and open a new alley to investigate the role of inter-molecular expansion as a precursor of molecular fluctuations on a bond-specific level.
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Affiliation(s)
- Jan Philipp Gabriel
- Institute of Materials Physics in Space, German Aerospace Center, 51170 Köln, Germany
| | - Robin Horstmann
- Institute for Condensed Matter Physics, Technical University Darmstadt, 64289 Darmstadt, Germany
| | - Martin Tress
- Peter Debye Institute for Soft Matter Research, Leipzig University, 04103 Leipzig, Germany
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2
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Canales A, Kotov OV, Küçüköz B, Shegai TO. Self-Hybridized Vibrational-Mie Polaritons in Water Droplets. PHYSICAL REVIEW LETTERS 2024; 132:193804. [PMID: 38804922 DOI: 10.1103/physrevlett.132.193804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 04/05/2024] [Indexed: 05/29/2024]
Abstract
We study the self-hybridization between Mie modes supported by water droplets with stretching and bending vibrations in water molecules. Droplets with radii >2.7 μm are found to be polaritonic on the onset of the ultrastrong light-matter coupling regime. Similarly, the effect is observed in larger deuterated water droplets at lower frequencies. Our results indicate that polaritonic states are ubiquitous and occur in water droplets in mists, fogs, and clouds. This finding may have implications not only for polaritonic physics but also for aerosol and atmospheric sciences.
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Affiliation(s)
- Adriana Canales
- Department of Physics, Chalmers University of Technology, 412 96 Göteborg, Sweden
| | - Oleg V Kotov
- Department of Physics, Chalmers University of Technology, 412 96 Göteborg, Sweden
| | - Betül Küçüköz
- Department of Physics, Chalmers University of Technology, 412 96 Göteborg, Sweden
| | - Timur O Shegai
- Department of Physics, Chalmers University of Technology, 412 96 Göteborg, Sweden
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3
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Li Y, Xu L, Ouyang J, Lei J, Hu J, Xing X, Chen P, Li J, Zhong C, Yang B, Li H. Harmonic and anharmonic studies on THz spectra of two vanillin polymorphs. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 309:123869. [PMID: 38198992 DOI: 10.1016/j.saa.2024.123869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 12/05/2023] [Accepted: 01/05/2024] [Indexed: 01/12/2024]
Abstract
Polymorphism commonly exists in organic molecular crystals. The fingerprint features in low-frequency vibrational range are important information reflecting different intermolecular interactions of polymorphs. Interpreting these features is very helpful to understand vibrational property of polymorphs and reveal the thermodynamic stability. In this work, the low-frequency vibrations of form I and II of vanillin are investigated using terahertz time-domain spectroscopy. Static DFT calculation and ab initio molecular dynamics (AIMD) are employed to interpret their low-frequency vibrations of both forms in harmonic and anharmonic ways, respectively. Their low-frequency vibration characteristics in harmonic calculations are discussed, and anharmonic mode couplings between OH bond stretch and the stretching and bending motion of hydrogen bonds are uncovered. Moreover, the thermodynamic energies including electronic potential energy and vibrational/kinetic energy arising from nuclear motions are calculated. The result reveals that the stability order of the two forms is mainly dependent on their electric potential energy difference.
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Affiliation(s)
- Yin Li
- School of Physics and Materials Science, Nanchang University, Xuefu Avenue 999, Nanchang City 330031, China.
| | - Li Xu
- School of Chemistry, Biology and Materials Science, East China University of Technology, Guanglan Avenue 418, Nanchang City 330013, China
| | - Jinbo Ouyang
- School of Chemistry, Biology and Materials Science, East China University of Technology, Guanglan Avenue 418, Nanchang City 330013, China.
| | - Jiangtao Lei
- Institute of Space Science and Technology, Nanchang University, Xuefu Avenue 999, Nanchang City 330031, China
| | - Jun Hu
- School of Mechatronics & Vehicle Engineering, East China Jiaotong University, Nanchang, Jiangxi 330013, China
| | - Xiaohong Xing
- School of Chemistry, Biology and Materials Science, East China University of Technology, Guanglan Avenue 418, Nanchang City 330013, China
| | - Peng Chen
- School of Chemistry, Biology and Materials Science, East China University of Technology, Guanglan Avenue 418, Nanchang City 330013, China
| | - Jiaqing Li
- School of Physics and Materials Science, Nanchang University, Xuefu Avenue 999, Nanchang City 330031, China
| | - Changqing Zhong
- School of Physics and Materials Science, Nanchang University, Xuefu Avenue 999, Nanchang City 330031, China
| | - Bo Yang
- School of Physics and Materials Science, Nanchang University, Xuefu Avenue 999, Nanchang City 330031, China
| | - Heng Li
- Fujian Provincial Key Laboratory of Semiconductors and Applications, Collaborative Innovation Center for Optoelectronic Semiconductors and Efficient Devices, Department of Physics, Xiamen University, Xiamen 361005, China; Jiujiang Research Institute, Xiamen University, Jiujiang 332000, China
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4
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Wakolo SW, Tryk DA, Nishiyama H, Miyatake K, Iiyama A, Inukai J. Various states of water species in an anion exchange membrane characterized by Raman spectroscopy under controlled temperature and humidity. Phys Chem Chem Phys 2024; 26:1658-1670. [PMID: 38009441 DOI: 10.1039/d3cp03660j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2023]
Abstract
Anion exchange membrane fuel cells (AEMFCs) hold the key to future mass commercialisation of fuel cell technology, even though currently, AEMFCs perform less optimally than proton exchange membrane fuel cells (PEMFCs). Unlike PEMFCs, AEMFCs have demonstrated the capability to operate independently of Pt group metal-based catalysts. Water characterization inside the membrane is one factor that significantly influences the performance of AEMFCs. In this paper, different water species inside an anion exchange membrane (AEM), QPAF-4, developed at the University of Yamanashi, were studied for the first time using micro-Raman spectroscopy. Spectra of pure water, alkaline solutions, and calculations based on density functional theory were used to identify the water species in the AEM. The OH stretching band was deconvoluted into nine unique Gaussian bands. All the hydrogen-bonded OH species increased steadily with increasing humidity, while the CH and non-H-bonded OH remained relatively constant. These results confirm the viability of micro-Raman spectroscopy in studying the various water-related species in AEMs. The availability of this technique is an essential prerequisite in improving the ionic conductivity and effectively solving the persisting durability challenge facing AEMFCs, thus hastening the possibility of mass commercialisation of fuel cells.
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Affiliation(s)
- Solomon Wekesa Wakolo
- Integrated Graduate School of Medicine, Engineering, and Agricultural Sciences, University of Yamanashi, 4-3-37 Takeda, Kofu, Yamanashi 400-8510, Japan
| | - Donald A Tryk
- Hydrogen and Fuel Cell Nanomaterials Research Center, University of Yamanashi, 6-43 Miyamae, Kofu, Yamanashi 400-0021, Japan.
| | - Hiromichi Nishiyama
- Hydrogen and Fuel Cell Nanomaterials Research Center, University of Yamanashi, 6-43 Miyamae, Kofu, Yamanashi 400-0021, Japan.
| | - Kenji Miyatake
- Hydrogen and Fuel Cell Nanomaterials Research Center, University of Yamanashi, 6-43 Miyamae, Kofu, Yamanashi 400-0021, Japan.
- Clean Energy Research Center, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8510, Japan
- Department of Applied Chemistry, Waseda University, Tokyo 169-8555, Japan
| | - Akihiro Iiyama
- Hydrogen and Fuel Cell Nanomaterials Research Center, University of Yamanashi, 6-43 Miyamae, Kofu, Yamanashi 400-0021, Japan.
| | - Junji Inukai
- Hydrogen and Fuel Cell Nanomaterials Research Center, University of Yamanashi, 6-43 Miyamae, Kofu, Yamanashi 400-0021, Japan.
- Clean Energy Research Center, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8510, Japan
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5
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Zhao X, Yang H, Duley WW, Zheng S, Guo T, Zhou NY. Simple Self-Powered Sensor for the Detection of D 2O and Other Isotopologues of Liquid Water. ACS Sens 2023; 8:3973-3984. [PMID: 37725347 DOI: 10.1021/acssensors.3c01772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
Distinguishing between heavy water and regular water has been a continuing challenge since these isotopologues of water have very similar physical and chemical properties. We report the development and evaluation of a simple, inexpensive sensor capable of detecting liquid D2O and other isotopologues of liquid water through the measurement of electrical signals generated from a nanoporous alumina film. This electrical output, consisting of a sharp voltage pulse followed by a separate broad voltage pulse, is present during the application of microliter volumes of liquid. The amplitude and temporal characteristics of these pulses have been combined to enable four diagnostic parameters for sensing D2O and H218O. The sensing mechanism is based on different modification effects on the alumina surface by H2O and D2O, spatially localized variations in the surface potential of alumina induced by isotopically substituted water molecules, combined with the effect of isotopic composition on charge transfer. As a proof-of-concept demonstration, a sensing system has been developed that provides real-time detection of liquid D2O in a stand-alone system.
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Affiliation(s)
- Xiaoye Zhao
- Centre for Advanced Materials Joining, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
| | - Hanwen Yang
- Centre for Advanced Materials Joining, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
| | - Walter W Duley
- Centre for Advanced Materials Joining, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
- Department of Physics and Astronomy, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
| | - Shuo Zheng
- Centre for Advanced Materials Joining, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
| | - Tao Guo
- Centre for Advanced Materials Joining, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
| | - Norman Y Zhou
- Centre for Advanced Materials Joining, University of Waterloo, Waterloo N2L 3G1, Ontario, Canada
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6
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Lu Y, Qiu T, Bloom BP, Subotnik JE, Waldeck DH. Spin-Based Chiral Separations and the Importance of Molecule-Solvent Interactions. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2023; 127:14155-14162. [PMID: 37529661 PMCID: PMC10389781 DOI: 10.1021/acs.jpcc.3c01159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Revised: 06/01/2023] [Indexed: 08/03/2023]
Abstract
This work uses magneto-electrochemical quartz crystal microbalance methods to study the enantiospecific adsorption of chiral molecules onto a ferromagnetic substrate. The effects of solution conditions, pH, and solvent isotope composition indicate that the kinetics of the enantiomeric adsorption depend strongly on the charge state and geometry of the adsorbate, whereas no thermodynamic contributions to enantiospecificity are found. Density functional theory calculations reveal that an interplay between the adsorbate and solvent molecules is important for defining the observed enantiospecific preference with an applied magnetic field; however, it remains unclear if intermolecular vibrational couplings contribute to the phenomenon.
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Affiliation(s)
- Yiyang Lu
- Chemistry
Department, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Tian Qiu
- Departments
of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Brian P. Bloom
- Chemistry
Department, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Joseph E. Subotnik
- Departments
of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - David H. Waldeck
- Chemistry
Department, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
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7
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Pastorczak M, Duk K, Shahab S, Kananenka AA. Combinational Vibration Modes in H 2O/HDO/D 2O Mixtures Detected Thanks to the Superior Sensitivity of Femtosecond Stimulated Raman Scattering. J Phys Chem B 2023. [PMID: 37201478 DOI: 10.1021/acs.jpcb.3c01334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Overtones and combinational modes frequently play essential roles in ultrafast vibrational energy relaxation in liquid water. However, these modes are very weak and often overlap with fundamental modes, particularly in isotopologues mixtures. We measured VV and HV Raman spectra of H2O and D2O mixtures with femtosecond stimulated Raman scattering (FSRS) and compared the results with calculated spectra. Specifically, we observed the mode at around 1850 cm-1 and assigned it to H-O-D bend + rocking libration. Second, we found that the H-O-D bend overtone band and the OD stretch + rocking libration combination band contribute to the band located between 2850 and 3050 cm-1. Furthermore, we assigned the broad band located between 4000 and 4200 cm-1 to be composed of combinational modes of high-frequency OH stretching modes with predominantly twisting and rocking librations. These results should help in a proper interpretation of Raman spectra of aqueous systems as well as in the identification of vibrational relaxation pathways in isotopically diluted water.
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Affiliation(s)
- Marcin Pastorczak
- Institute of Physical Chemistry, Polish Academy of Sciences, Laser Centre, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Katsiaryna Duk
- Institute of Physical Chemistry, Polish Academy of Sciences, Laser Centre, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Samaneh Shahab
- Institute of Physical Chemistry, Polish Academy of Sciences, Laser Centre, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Alexei A Kananenka
- Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States
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8
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Ben David R, Ben Yaacov A, Eren B. Hydrogen Exchange through Hydrogen Bonding between Methanol and Water in the Adsorbed State on Cu(111). J Phys Chem Lett 2023; 14:2644-2650. [PMID: 36888973 PMCID: PMC10026171 DOI: 10.1021/acs.jpclett.3c00161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/07/2023] [Indexed: 06/18/2023]
Abstract
The interaction between submonolayers of methanol and water on Cu(111) is studied at 95-160 K temperature range with surface-sensitive infrared spectroscopy using isotopically labeled molecules. The initial interaction of methanol with the preadsorbed amorphous solid water at 95 K is through hydrogen-bonding with the dangling hydroxyl groups of water. Upon increasing the temperature up to 140 K, methanol and deuterated water form H-bonded structures which allow hydrogen-deuterium exchange between the hydroxyl group of methanol and the deuterated water. The evolution of the O-D and O-H stretching bands indicate that the hydrogen transfer is dominant at around 120-130 K, slightly below the desorption temperature of methanol. Above 140 K, methanol desorbs and a mixture of hydrogen-related water isotopologues remains on the surface. The isotopic composition of this mixture versus the initial D2O:CH3OH ratio supports a potential exchange mechanism via hydrogen hopping between alternating methanol and water molecules in a hydrogen-bonded network.
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Affiliation(s)
- Roey Ben David
- Department
of Chemical and Biological Physics, Weizmann
Institute of Science, 234 Herzl Street, 76100 Rehovot, Israel
| | - Adva Ben Yaacov
- Department
of Chemical and Biological Physics, Weizmann
Institute of Science, 234 Herzl Street, 76100 Rehovot, Israel
| | - Baran Eren
- Department
of Chemical and Biological Physics, Weizmann
Institute of Science, 234 Herzl Street, 76100 Rehovot, Israel
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9
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Cressoni C, Vurro F, Milan E, Muccilli M, Mazzer F, Gerosa M, Boschi F, Spinelli AE, Badocco D, Pastore P, Delgado NF, Collado MH, Marzola P, Speghini A. From Nanothermometry to Bioimaging: Lanthanide-Activated KY 3F 10 Nanostructures as Biocompatible Multifunctional Tools for Nanomedicine. ACS APPLIED MATERIALS & INTERFACES 2023; 15:12171-12188. [PMID: 36826830 PMCID: PMC9999348 DOI: 10.1021/acsami.2c22000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 02/15/2023] [Indexed: 06/18/2023]
Abstract
Lanthanide-activated fluoride-based nanostructures are extremely interesting multifunctional tools for many modern applications in nanomedicine, e.g., bioimaging, sensing, drug delivery, and photodynamic therapy. Importantly, environmental-friendly preparations using a green chemistry approach, as hydrothermal synthesis route, are nowadays highly desirable to obtain colloidal nanoparticles, directly dispersible in hydrophilic media, as physiological solution. The nanomaterials under investigation are new KY3F10-based citrate-capped core@shell nanostructures activated with several lanthanide ions, namely, Er3+, Yb3+, Nd3+, and Gd3+, prepared as colloidal water dispersions. A new facile microwave-assisted synthesis has been exploited for their preparation, with significant reduction of the reaction times and a fine control of the nanoparticle size. These core@shell multifunctional architectures have been investigated for use as biocompatible and efficient contrast agents for optical, magnetic resonance imaging (MRI) and computerized tomography (CT) techniques. These multifunctional nanostructures are also efficient noninvasive optical nanothermometers. In fact, the lanthanide emission intensities have shown a relevant relative variation as a function of the temperature, in the visible and near-infrared optical ranges, efficiently exploiting ratiometric intensity methods for optical thermometry. Importantly, in contrast with other fluoride hosts, chemical dissolution of KY3F10 citrate-capped nanocrystals in aqueous environment is very limited, of paramount importance for applications in biological fluids. Furthermore, due to the strong paramagnetic properties of lanthanides (e.g., Gd3+), and X-ray absorption of both yttrium and lanthanides, the nanostructures under investigation are extremely useful for MRI and CT imaging. Biocompatibility studies of the nanomaterials have revealed very low cytotoxicity in dfferent human cell lines. All these features point to a successful use of these fluoride-based core@shell nanoarchitectures for simultaneous diagnostics and temperature sensing, ensuring an excellent biocompatibility.
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Affiliation(s)
- Chiara Cressoni
- Nanomaterials
Research Group, Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Federica Vurro
- Division
of Experimental Oncology, Urological Research Institute, IRCCS San Raffaele Scientific Institute, Via Olgettina 60, 20132 Milan, Italy
- University
Vita-Salute San Raffaele, Via Olgettina 60, 20132 Milan, Italy
| | - Emil Milan
- Nanomaterials
Research Group, Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Matilde Muccilli
- Department
of Computer Science, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Francesco Mazzer
- Nanomaterials
Research Group, Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Marco Gerosa
- Department
of Computer Science, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Federico Boschi
- Department
of Computer Science, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Antonello Enrico Spinelli
- Experimental
Imaging Centre, San Raffaele Scientific
Institute, Via Olgettina 60, 20132 Milan, Italy
| | - Denis Badocco
- Department
of Chemical Sciences, University of Padova, Via Marzolo 1, 35122 Padova, Italy
| | - Paolo Pastore
- Department
of Chemical Sciences, University of Padova, Via Marzolo 1, 35122 Padova, Italy
| | - Natalia Fernández Delgado
- Department
of Materials Science and Metallurgic Engineering and Inorganic Chemistry, University of Cadiz, Campus Universitario Río
San Pedro, 11519 Puerto Real, Cádiz, Spain
| | - Miriam Herrera Collado
- Department
of Materials Science and Metallurgic Engineering and Inorganic Chemistry, University of Cadiz, Campus Universitario Río
San Pedro, 11519 Puerto Real, Cádiz, Spain
| | - Pasquina Marzola
- Department
of Computer Science, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
| | - Adolfo Speghini
- Nanomaterials
Research Group, Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134 Verona, Italy
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10
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Toutounji M. Low-temperature vibronic spectroscopy of condensed chromophore exhibiting inhomogeneous distribution of vibrational frequencies in a mixed quantum-classical environment. Phys Chem Chem Phys 2023; 25:1290-1298. [PMID: 36533446 DOI: 10.1039/d2cp00891b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This work has been motivated by the recent paper by the author [M. Toutounji, Phys. Chem. Chem. Phys., 2021, 23, 21981] whereby a mixed quantum-classical Liouville equation was used to probe the spectroscopy and dynamics of a spin-boson system. A mixed quantum-classical Liouville equation treats the system of interest quantum mechanically, the bath classically, and the coupling term mixed quantum-classical mechanically. This paper offers a two-fold advantage: correcting the treatment of the electronic transition decay (width in frequency domain) and assessing the local heterogeneous vibrational structure. The homogeneous linear absorption spectrum of a chromophore embedded in a mixed quantum-classical environment at low temperature is composed of a sharp peak called a zero-phonon line (ZPL) and a broad phonon sideband (PSB), whereby the ZPL and the PSB are assimilated by a Lorentzian function and Voigt profiles, respectively. The PSB, in this case, is characterized by a local heterogeneous structure due to a dispersive medium of vibrations, modeled by vibrational Gaussian distributions to represent the arising inhomogeneous broadening and Lorentzians to model the homogeneous vibrations. This description seems to model proteins and amorphous solids exhibiting a local heterogeneous structure as both electronic and vibrational inhomogeneous broadening seems to be large in these media. This work provides a derivation of linear absorption lineshape and vibronic transition dipole moment time correlation functions, both of which account for pure electronic dephasing (ZPL width) the Voigt profile description of the phonon profiles (PSB) in dispersive media.
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Affiliation(s)
- Mohamad Toutounji
- College of Science, Department of Chemistry, UAE University, P. O. Box 15551, Al-Ain, United Arab Emirates.
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11
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Caliskan S, Oldenhof H, Temeloglu P, Sieme H, Wolkers WF. Infrared spectroscopic analysis of hydrogen-bonding interactions in cryopreservation solutions. Biochim Biophys Acta Gen Subj 2023; 1867:130254. [PMID: 36243203 DOI: 10.1016/j.bbagen.2022.130254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 09/08/2022] [Accepted: 10/10/2022] [Indexed: 11/13/2022]
Abstract
BACKGROUND In this study we investigated hydrogen bonding interactions in hydrated and frozen solutions of different cryoprotective agents (CPAs) including dimethyl sulfoxide, glycerol, ethylene glycol, propylene glycol, and trehalose. We also investigated the effect of CPAs on ice crystal growth during storage and correlated this with storage stability of liposomes. METHODS FTIR spectroscopy was used to study hydrogen bonding interactions in CPA solutions in H2O and D2O, and their thermal response was analyzed using van 't Hoff analysis. The effect of CPAs on ice crystal growth during storage was investigated by microscopy and correlated with storage stability of liposomes encapsulated with a fluorescent dye. RESULTS Principal component analyses demonstrated that different CPAs can be recognized based on the shape of the OD band region only. Chemically similar molecules such as glycerol and ethylene glycol closely group together in a principal component score plot, whereas trehalose and DMSO appear as condensed separated clusters. The OH/OD band of CPA solutions exhibits an overall shift to higher wavenumbers with increasing temperature and changed fractions of weak and strong hydrogen interactions. CPAs diminish ice crystal formation in frozen samples during storage and minimize liposome leakage during freezing but cannot prevent leakage during frozen storage. CONCLUSIONS CPAs can be distinguished from one another based on the hydrogen bonding network that is formed in solution. DMSO-water mixtures behave anomalous compared to other CPAs that have OH groups. CPAs modulate ice crystal formation during frozen storage but cannot prevent liposome leakage during frozen storage.
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Affiliation(s)
- Sükrü Caliskan
- Biostabilization Laboratory - Lower Saxony Centre for Biomedical Engineering, Implant Research and Development, Stadtfelddamm 34, 30625 Hannover, Germany; Unit for Reproductive Medicine - Clinic for Horses, University of Veterinary Medicine Hannover, Bünteweg 15, 30559 Hannover, Germany
| | - Harriëtte Oldenhof
- Biostabilization Laboratory - Lower Saxony Centre for Biomedical Engineering, Implant Research and Development, Stadtfelddamm 34, 30625 Hannover, Germany; Unit for Reproductive Medicine - Clinic for Horses, University of Veterinary Medicine Hannover, Bünteweg 15, 30559 Hannover, Germany
| | - Pelin Temeloglu
- Biostabilization Laboratory - Lower Saxony Centre for Biomedical Engineering, Implant Research and Development, Stadtfelddamm 34, 30625 Hannover, Germany
| | - Harald Sieme
- Unit for Reproductive Medicine - Clinic for Horses, University of Veterinary Medicine Hannover, Bünteweg 15, 30559 Hannover, Germany
| | - Willem F Wolkers
- Biostabilization Laboratory - Lower Saxony Centre for Biomedical Engineering, Implant Research and Development, Stadtfelddamm 34, 30625 Hannover, Germany; Unit for Reproductive Medicine - Clinic for Horses, University of Veterinary Medicine Hannover, Bünteweg 15, 30559 Hannover, Germany.
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12
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Wagen CC, Jacobsen EN. Evidence for Oxonium Ions in Ethereal "Hydrogen Chloride". Org Lett 2022; 24:8826-8831. [PMID: 36450043 PMCID: PMC9879297 DOI: 10.1021/acs.orglett.2c03622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
Although solutions of hydrogen chloride in ethereal solvents like diethyl ether or dioxane are commonly employed in the laboratory, the solution structure of these reagents has yet to be firmly established. Here, we analyze solutions of ethereal hydrogen chloride or deuterium chloride in toluene, in dichloromethane, or in the absence of a co-solvent by in situ infrared spectroscopy. The resulting spectra are inconsistent with free HCl or often-proposed 1:1 HCl-ether complexes but closely match the predicted spectra of oxonium ions generated via protonation of diethyl ether. Molecular dynamics simulation of the oxonium chloride complexes provides evidence for an outer-sphere contact ion pair. These results suggest new approaches for tuning the acidity of strong Brønsted acids in organic solvents and demonstrate the importance of conducting spectroscopic measurements under reaction-relevant conditions.
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Affiliation(s)
- Corin C. Wagen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Eric N. Jacobsen
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States
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13
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Cuppen HM, Noble JA, Coussan S, Redlich B, Ioppolo S. Energy Transfer and Restructuring in Amorphous Solid Water upon Consecutive Irradiation. J Phys Chem A 2022; 126:8859-8870. [DOI: 10.1021/acs.jpca.2c06314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Affiliation(s)
- Herma M. Cuppen
- Institute for Molecules and Materials, Radboud University, Nijmegen 6525 AJ, The Netherlands
- Van’t Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam 1098 XH, The Netherlands
| | - Jennifer A. Noble
- PIIM, Aix-Marseille Université, CNRS, Marseille 13397, France
- School of Physical Sciences, University of Kent, Canterbury CT2 7NH, U.K
| | | | - Britta Redlich
- FELIX Laboratory, Radboud University, Nijmegen 6525 ED, The Netherlands
| | - Sergio Ioppolo
- Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, Aarhus C 8000, Denmark
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London E1 4NS, U.K
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14
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Chen J, Zeng X, Chen L. Evolution of microstructures and hydrogen bond interactions within choline amino acid ionic liquid and water mixtures. Phys Chem Chem Phys 2022; 24:17792-17808. [PMID: 35848866 DOI: 10.1039/d2cp01990f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The microstructures and interactions of choline amino acid ([Cho][AA]) ionic liquid (IL) and water molecules were investigated. When water was added to [Cho][AA], the asymmetric and symmetric vibration peaks of the -COO- group shifted to lower and higher wavenumbers, respectively. The increase of water addition also resulted in increased conductivity values and decreased viscosity values of [Cho][AA]-water mixtures. These features are consistent with the physical picture that [Cho][AA] could gradually dissociate into hydrated tight ion pairs and water-separated ion pairs and then into free and solvated ions. When it comes to different anions (choline lysine, [Cho][Lys], and choline aspartic acid, [Cho][Asp]), the anion structure has a significant regulation on [Cho][AA]-water interactions. The shorter side chain length and strong polar -COOH group of Asp- endow [Cho][Asp] with stronger cation-anion interactions and less dissociation by water molecules. As a result, the frequency shift degrees and conductivity values of [Cho][Asp]-water mixtures were lower, and the viscosity values were higher than those of [Cho][Lys]-water mixtures. And, [Cho][Lys] could completely dissociate as free hydrated ions at w : IL ≥ 7 : 3, while the free hydrated ions of [Cho][Asp] only occurred when the w : IL ratio reached 8 : 2. These results can ease the experimental effort and improve the application efficiency of [Cho][AA] ILs.
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Affiliation(s)
- Jin Chen
- Ministry of Education Engineering Research Center of Starch & Protein Processing, Guangdong Province Key Laboratory for Green Processing of Natural Products and Product Safety, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Xixi Zeng
- Ministry of Education Engineering Research Center of Starch & Protein Processing, Guangdong Province Key Laboratory for Green Processing of Natural Products and Product Safety, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
| | - Ling Chen
- Ministry of Education Engineering Research Center of Starch & Protein Processing, Guangdong Province Key Laboratory for Green Processing of Natural Products and Product Safety, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China.
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15
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Brünig FN, Geburtig O, Canal AV, Kappler J, Netz RR. Time-Dependent Friction Effects on Vibrational Infrared Frequencies and Line Shapes of Liquid Water. J Phys Chem B 2022; 126:1579-1589. [PMID: 35167754 PMCID: PMC8883462 DOI: 10.1021/acs.jpcb.1c09481] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
From ab initio simulations
of liquid water, the time-dependent
friction functions and time-averaged nonlinear effective bond potentials
for the OH stretch and HOH bend vibrations are extracted. The obtained
friction exhibits not only adiabatic contributions at and below the
vibrational time scales but also much slower nonadiabatic contributions,
reflecting homogeneous and inhomogeneous line broadening mechanisms,
respectively. Intermolecular interactions in liquid water soften both
stretch and bend potentials compared to the gas phase, which by itself
would lead to a red-shift of the corresponding vibrational bands.
In contrast, nonadiabatic friction contributions cause a spectral
blue shift. For the stretch mode, the potential effect dominates,
and thus, a significant red shift when going from gas to the liquid
phase results. For the bend mode, potential and nonadiabatic friction
effects are of comparable magnitude, so that a slight blue shift results,
in agreement with well-known but puzzling experimental findings. The
observed line broadening is shown to be roughly equally caused by
adiabatic and nonadiabatic friction contributions for both the stretch
and bend modes in liquid water. Thus, the quantitative analysis of
the time-dependent friction that acts on vibrational modes in liquids
advances the understanding of infrared vibrational frequencies and
line shapes.
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16
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Lee E, Baiz CR. How cryoprotectants work: hydrogen-bonding in low-temperature vitrified solutions. Chem Sci 2022; 13:9980-9984. [PMID: 36128234 PMCID: PMC9430440 DOI: 10.1039/d2sc03188d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 08/05/2022] [Indexed: 11/30/2022] Open
Abstract
Dimethyl sulfoxide (DMSO) increases cell and tissue viability at low temperatures and is commonly used as a cryoprotectant for cryogenic storage of biological materials. DMSO disorders the water hydrogen-bond networks and inhibits ice-crystal growth, though the specific DMSO interactions with water are difficult to characterize. In this study, we use a combination of Fourier Transform infrared spectroscopy (FTIR), molecular dynamics simulations, and vibrational frequency maps to characterize the temperature-dependent hydrogen bonding interactions of DMSO with water from 30 °C to −80 °C. Specifically, broad peaks in O–D stretch vibrational spectra of DMSO and deuterated water (HDO) cosolvent systems show that the hydrogen bond networks become increasingly disrupted compared to pure water. Simulations demonstrated that these disrupted hydrogen bond networks remain largely localized to the first hydration shell of DMSO, which explains the high DMSO concentrations needed to prevent ice crystal formation in cryopreservation applications. Dimethyl sulfoxide (DMSO) increases cell and tissue viability at low temperatures and is commonly used as a cryoprotectant for cryogenic storage of biological materials.![]()
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Affiliation(s)
- Euihyun Lee
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, USA
| | - Carlos R. Baiz
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, USA
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17
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Vinogradov I, Singh S, Lyle H, Paolino M, Mandal A, Rossmeisl J, Cuk T. Free energy difference to create the M-OH * intermediate of the oxygen evolution reaction by time-resolved optical spectroscopy. NATURE MATERIALS 2022; 21:88-94. [PMID: 34725518 DOI: 10.1038/s41563-021-01118-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 08/24/2021] [Indexed: 06/13/2023]
Abstract
Theoretical descriptors differentiate the catalytic activity of materials for the oxygen evolution reaction by the strength of oxygen binding in the reactive intermediate created upon electron transfer. Recently, time-resolved spectroscopy of a photo-electrochemically driven oxygen evolution reaction followed the vibrational and optical spectra of this intermediate, denoted M-OH*. However, these inherently kinetic experiments have not been connected to the relevant thermodynamic quantities. Here we discover that picosecond optical spectra of the Ti-OH* population on lightly doped SrTiO3 are ordered by the surface hydroxylation. A Langmuir isotherm as a function of pH extracts an effective equilibrium constant relatable to the free energy difference of the first oxygen evolution reaction step. Thus, time-resolved spectroscopy of the catalytic surface reveals both kinetic and energetic information of elementary reaction steps, which provides a critical new connection between theory and experiment by which to tailor the pathway of water oxidation and other surface reactions.
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Affiliation(s)
- Ilya Vinogradov
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Boulder, CO, USA
| | - Suryansh Singh
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Boulder, CO, USA
- Materials Science and Engineering Program, University of Colorado, Boulder, Boulder, CO, USA
| | - Hanna Lyle
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Boulder, CO, USA
- Materials Science and Engineering Program, University of Colorado, Boulder, Boulder, CO, USA
| | - Michael Paolino
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Boulder, CO, USA
- Department of Physics, University of Colorado, Boulder, Boulder, CO, USA
| | - Aritra Mandal
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Boulder, CO, USA.
| | - Jan Rossmeisl
- Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
| | - Tanja Cuk
- Renewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, Boulder, CO, USA.
- Materials Science and Engineering Program, University of Colorado, Boulder, Boulder, CO, USA.
- Department of Chemistry, University of Colorado, Boulder, Boulder, CO, USA.
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18
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Liu X, Wang Y, Li S, Fang W, Gong N, Sun C, Men Z. Investigated coherent anti-Stokes Raman scattering in the process of cascaded stimulated Raman scattering in liquid and ice-Ih D 2O. J Chem Phys 2021; 155:244304. [PMID: 34972362 DOI: 10.1063/5.0074035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Stimulated Raman scattering (SRS) of liquid and ice-Ih D2O was investigated using a pulsed Nd:YAG laser with a wavelength of 532 nm. The high-order Stokes peaks and corresponding anti-Stokes SRS [Coherent Anti-Stokes Raman Spectroscopy (CARS)] peaks were obtained. Two symmetric and antisymmetric Raman modes of stretching vibrations were observed in liquid D2O, while only a symmetric stretching vibration mode was observed in ice-Ih D2O. Pure Stokes SRS is always collinear with the pump beam along the axial direction. Some ring-like Stokes SRS and CARS shifts, which originate from four-wave mixing processes, can also be observed only in the forward direction along with different angles meeting the phase-matching criteria, respectively. Simultaneously, the temporal behavior of SRS in liquid and ice-Ih D2O was examined, and the temporal waveforms of the pump laser pulse, transmitted pump pulse, and the forward SRS pulse were measured. In both cases, SRS was the dominant contributor to stimulated scattering. However, the efficiency values drastically decreased due to the self-termination behavior of SRS in liquid D2O, which arose from the thermal self-defocusing of both the pump beam and the SRS beam, owing to the Stokes shift-related opto-heating effect. In contrast, for the SRS process in ice-Ih D2O, the thermal self-defocusing influence was negligible, benefitting from a much greater thermal conductivity and a higher conversion efficiency of SRS generation retained under both of the conditions.
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Affiliation(s)
- Xiaofeng Liu
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Ying Wang
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Shuang Li
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Wenhui Fang
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Nan Gong
- State Key Laboratory of Modern Optical Instrumentation, School of Optical Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Chenglin Sun
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Zhiwei Men
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
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19
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Dementyev P, Khayya N, Kreie J, Gölzhäuser A. Vapor Adsorption Measurements with Two-Dimensional Membranes. Chemphyschem 2021; 23:e202100732. [PMID: 34817107 PMCID: PMC9300110 DOI: 10.1002/cphc.202100732] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 11/22/2021] [Indexed: 11/08/2022]
Abstract
Two-dimensional (2D) membranes display extraordinary mass transfer properties, in particular for the permeation of gaseous substances. Their ultimate thickness not only ensures the shortest diffusion pathways, but also makes the membrane surface play a significant role in accommodating and guiding the permeating molecules. As saturated vapors of water and organic solvents are often observed to pass 2D membranes faster than inert gases, condensation is believed to be responsible for surface-mediated transport. Here, we present a spectroscopic experiment to probe adsorption of condensable species on 2D membranes under realistic conditions. Polarization-modulation infrared reflection absorption spectroscopy (PM IRAS) is coupled with a reaction chamber and a vacuum system to control the vaporous environments. The measurements are demonstrated to yield quantitative information on the amount of adsorbates onto supported 2D layers. As a case study, the azeotropic mixture of water and propanol is revealed to maintain its molar composition upon interaction with carbon nanomembranes.
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Affiliation(s)
- Petr Dementyev
- Faculty of Physics, Bielefeld University, Universitätsstr. 25, 33615, Bielefeld, Germany
| | - Neita Khayya
- Faculty of Physics, Bielefeld University, Universitätsstr. 25, 33615, Bielefeld, Germany
| | - Jakob Kreie
- Faculty of Physics, Bielefeld University, Universitätsstr. 25, 33615, Bielefeld, Germany
| | - Armin Gölzhäuser
- Faculty of Physics, Bielefeld University, Universitätsstr. 25, 33615, Bielefeld, Germany
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20
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Chelius K, Wat JH, Phadkule A, Reppert M. Distinct electrostatic frequency tuning rates for amide I and amide I' vibrations. J Chem Phys 2021; 155:195101. [PMID: 34800962 DOI: 10.1063/5.0064518] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Amide I spectroscopy probes the backbone C=O stretch vibrations of peptides and proteins. Amide I spectra are often collected in deuterated water (D2O) since this provides a cleaner background in the amide I frequency range; such data are often referred to as amide I' spectra since deuteration induces changes in the mode structure, including a roughly ∼10 cm-1 redshift. For biological samples, however, deuteration is often not possible. As amide I frequency maps are increasingly applied to quantitative protein structural analysis, this raises the interesting challenge of drawing direct connections between amide I and amide I' data. We here analyze amide I and amide I' peak frequencies for a series of dipeptides and related compounds. Changes in protonation state induce large electrostatic shifts in the peak frequencies, allowing us to amass a sizable library of data points for direct amide I/amide I' comparison. While we find an excellent linear correlation between amide I and amide I' peak frequencies, the deuteration-induced shift is smaller for more red-shifted vibrations, indicating different electrostatic tuning rates in the two solvents. H2O/D2O shifts were negligible for proline-containing dipeptides that lack exchangeable amide hydrogens, indicating that the intrinsic properties of the solvent do not strongly influence the H/D shift. These findings indicate that the distinct tuning rates observed for the two vibrations arise from modifications to the intrinsic properties of the amide bond and provide (at least for solvated dipeptides) a simple, linear "map" for translating between amide I and amide I' frequencies.
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Affiliation(s)
- Kevin Chelius
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Jacob H Wat
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Amala Phadkule
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
| | - Mike Reppert
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
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21
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Marble CB, Xu X, Petrov GI, Wang D, Yakovlev VV. New insights into a hydrogen bond: hyper-Raman spectroscopy of DMSO-water solution. Phys Chem Chem Phys 2021; 23:24047-24051. [PMID: 34665187 DOI: 10.1039/d1cp02387j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogen bonding plays an essential role in biological processes by stabilizing proteins and lipid structures as well as controlling the speed of enzyme catalyzed reactions. Dimethyl sulfoxide-water (DMSO-H2O) solution serves as a classical model system by which the direct and indirect effects of hydrogen bonding between water hydrogens and the sulfoxide functional group can be explored. The complex transition from self-bonding to heterogeneous bonding is important, and multiple spectroscopic approaches are needed to provide a detailed assessment of those interactions. In this report, for the first time, hyper-Raman scattering was successfully employed to investigate molecular interactions in DMSO-H2O system. We measured the improper blueshift of the C-S and C-H stretching modes of DMSO caused by partial charge transfer and enhanced bond polarization. By detecting differences in the frequency shifts of C-S and C-H modes for low DMSO concentrations (<33 mol%) we find evidence of the intermolecular bonds between water and the DMSO methyl groups. We exploit the high sensitivity of hyper-Raman scattering to the low frequency librations of H2O to observe a change in librational mode population providing insight into existing questions about the coordination of H2O around DMSO molecules and the formation of the H2O shell around DMSO molecules proposed in prior simulation studies. These results demonstrate that hyper-Raman spectroscopy can be a practical spectroscopic technique to study the intermolecular bonding of model systems and test claims about model system bonding generated by theoretical calculations.
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Affiliation(s)
- Christopher B Marble
- Department of Physics and Astronomy, Texas A&M University, College Station, Texas, 77843, USA.
| | - Xingqi Xu
- Department of Biomedical Engineering, Texas A&M University, College Station, Texas, 77843, USA.,Interdisciplinary Center for Quantum Information, State Key Laboratory of Modern Optical Instrumentation, and Zhejiang Province Key Laboratory of Quantum Technology and Device, Department of Physics, Zhejiang University, Hangzhou 310027, Zhejiang Province, China
| | - Georgi I Petrov
- Department of Biomedical Engineering, Texas A&M University, College Station, Texas, 77843, USA
| | - Dawei Wang
- Interdisciplinary Center for Quantum Information, State Key Laboratory of Modern Optical Instrumentation, and Zhejiang Province Key Laboratory of Quantum Technology and Device, Department of Physics, Zhejiang University, Hangzhou 310027, Zhejiang Province, China
| | - Vladislav V Yakovlev
- Department of Physics and Astronomy, Texas A&M University, College Station, Texas, 77843, USA. .,Department of Biomedical Engineering, Texas A&M University, College Station, Texas, 77843, USA
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22
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Kwac K, Freedman H, Cho M. Machine Learning Approach for Describing Water OH Stretch Vibrations. J Chem Theory Comput 2021; 17:6353-6365. [PMID: 34498885 DOI: 10.1021/acs.jctc.1c00540] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A machine learning approach employing neural networks is developed to calculate the vibrational frequency shifts and transition dipole moments of the symmetric and antisymmetric OH stretch vibrations of a water molecule surrounded by water molecules. We employed the atom-centered symmetry functions (ACSFs), polynomial functions, and Gaussian-type orbital-based density vectors as descriptor functions and compared their performances in predicting vibrational frequency shifts using the trained neural networks. The ACSFs perform best in modeling the frequency shifts of the OH stretch vibration of water among the types of descriptor functions considered in this paper. However, the differences in performance among these three descriptors are not significant. We also tried a feature selection method called CUR matrix decomposition to assess the importance and leverage of the individual functions in the set of selected descriptor functions. We found that a significant number of those functions included in the set of descriptor functions give redundant information in describing the configuration of the water system. We here show that the predicted vibrational frequency shifts by trained neural networks successfully describe the solvent-solute interaction-induced fluctuations of OH stretch frequencies.
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Affiliation(s)
- Kijeong Kwac
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Republic of Korea
| | - Holly Freedman
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Republic of Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Republic of Korea.,Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
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23
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Hack JH, Dombrowski JP, Ma X, Chen Y, Lewis NHC, Carpenter WB, Li C, Voth GA, Kung HH, Tokmakoff A. Structural Characterization of Protonated Water Clusters Confined in HZSM-5 Zeolites. J Am Chem Soc 2021; 143:10203-10213. [PMID: 34210123 DOI: 10.1021/jacs.1c03205] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
A molecular description of the structure and behavior of water confined in aluminosilicate zeolite pores is a crucial component for understanding zeolite acid chemistry under hydrous conditions. In this study, we use a combination of ultrafast two-dimensional infrared (2D IR) spectroscopy and ab initio molecular dynamics (AIMD) to study H2O confined in the pores of highly hydrated zeolite HZSM-5 (∼13 and ∼6 equivalents of H2O per Al atom). The 2D IR spectrum reveals correlations between the vibrations of both terminal and H-bonded O-H groups and the continuum absorption of the excess proton. These data are used to characterize the hydrogen-bonding network within the cluster by quantifying single-, double-, and non-hydrogen-bond donor water molecules. These results are found to be in good agreement with the statistics calculated from an AIMD simulation of an H+(H2O)8 cluster in HZSM-5. Furthermore, IR spectral assignments to local O-H environments are validated with DFT calculations on clusters drawn from AIMD simulations. The simulations reveal that the excess charge is detached from the zeolite and resides near the more highly coordinated water molecules in the cluster. When they are taken together, these results unambiguously assign the complex IR spectrum of highly hydrated HZSM-5, providing quantitative information on the molecular environments and hydrogen-bonding topology of protonated water clusters under extreme confinement.
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Affiliation(s)
- John H Hack
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - James P Dombrowski
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, Ilinois 60208-3120, United States
| | - Xinyou Ma
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.,Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Yaxin Chen
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, Ilinois 60208-3120, United States
| | - Nicholas H C Lewis
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - William B Carpenter
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Chenghan Li
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.,Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Gregory A Voth
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States.,Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Harold H Kung
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, Ilinois 60208-3120, United States
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
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24
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Yang Y, Wang T, Tian F, Wang X, Hu Y, Xia X, Xu S. PEG-Induced Controllable Thin-Thickness Gradient and Water Retention: A Simple Way to Programme Deformation of Hydrogel Actuators. Macromol Rapid Commun 2021; 42:e2000749. [PMID: 34128581 DOI: 10.1002/marc.202000749] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 01/18/2021] [Indexed: 12/28/2022]
Abstract
Building the differential growth through the thickness is a promising and challenging approach to design the morphing structures of hydrogel actuators. Besides retaining the size of the hydrogel actuators under environmental stimuli still remains a big challenge. Herein, a facile and universal approach is developed to address both issues by introducing PEG during the polymerization of N-isopropylacrylamide (NIPAm) via one step method using asymmetric mold. Both composition gradient and pore gradient are obtained in micro level along the thickness direction of the final hydrogel, while thin-thickness gradient in macro level. The thickness gradient and water retention can be controllably adjusted by changing PEG concentration. The introduction of PEG effectively improves both responsive and non-shrunken performance by the interaction with PNIPAm. The resultant anisotropic PNIPAm/PEG hydrogel respond quickly and reach maximum deformation (360°) within 10 s at low temperature (40 °C). The various 3D shape and biomimetic movement can be programmed by simply controlling the PEG concentration and mold shape. This strategy can provide new insights into the design intelligent soft materials with 3D morphing for bioinspired and biomedical applications.
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Affiliation(s)
- Yang Yang
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Ting Wang
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Fei Tian
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Xionglei Wang
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Yan Hu
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Xuehuan Xia
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
| | - Shimei Xu
- The Collaborative Innovation Center for Eco-Friendly and Fire-Safety Polymeric Materials(MoE), National Engineering Laboratory of Eco-Friendly Polymeric Materials (Sichuan), State Key Laboratory of Polymer Materials Engineering, College of Chemistry, Sichuan University, Chengdu, 610064, China
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25
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Altman RM, Richmond GL. Twist and Stretch: Assignment and Surface Charge Sensitivity of a Water Combination Band and Its Implications for Vibrational Sum Frequency Spectra Interpretations. J Phys Chem B 2021; 125:6717-6726. [DOI: 10.1021/acs.jpcb.1c03408] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Rebecca M. Altman
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States
| | - Geraldine L. Richmond
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States
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26
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Gaynor JD, Weakly RB, Khalil M. Multimode two-dimensional vibronic spectroscopy. I. Orientational response and polarization-selectivity. J Chem Phys 2021; 154:184201. [PMID: 34241026 DOI: 10.1063/5.0047724] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Two-dimensional Electronic-Vibrational (2D EV) spectroscopy and two-dimensional Vibrational-Electronic (2D VE) spectroscopy are among the newest additions to the coherent multidimensional spectroscopy toolbox, and they are directly sensitive to vibronic couplings. In this first of two papers, the complete orientational response functions are developed for a model system consisting of two coupled anharmonic oscillators and two electronic states in order to simulate polarization-selective 2D EV and 2D VE spectra with arbitrary combinations of linearly polarized electric fields. Here, we propose analytical methods to isolate desired signals within complicated spectra and to extract the relative orientation between vibrational and vibronic dipole moments of the model system using combinations of polarization-selective 2D EV and 2D VE spectral features. Time-dependent peak amplitudes of coherence peaks are also discussed as means for isolating desired signals within the time-domain. This paper serves as a field guide for using polarization-selective 2D EV and 2D VE spectroscopies to map coupled vibronic coordinates on the molecular frame.
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Affiliation(s)
- James D Gaynor
- Department of Chemistry, University of Washington, P.O. Box 351700, Seattle, Washington 98195, USA
| | - Robert B Weakly
- Department of Chemistry, University of Washington, P.O. Box 351700, Seattle, Washington 98195, USA
| | - Munira Khalil
- Department of Chemistry, University of Washington, P.O. Box 351700, Seattle, Washington 98195, USA
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27
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Koppisetti HVSRM, Ganguli S, Ghosh S, Mahalingam V. Rejuvenating the Geometric Electrocatalytic OER Performance of Crystalline Co 3 O 4 by Microstructure Engineering with Sulfate. Chem Asian J 2021; 16:988-998. [PMID: 33667035 DOI: 10.1002/asia.202100175] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Indexed: 11/06/2022]
Abstract
Despite significant research on its electrocatalytic OER activity, the geometric performance of Co3 O4 has remained unsatisfactory compared to relatively amorphous Co-based materials. In particular, the activity of Co3 O4 prepared through annealing always gets inferior compared to its amorphous precursor. This demands the development of synthetic techniques to prepare Co3 O4 with superior activity as the unpredictable crystal structure of the amorphous materials makes it difficult to understand their structure-activity relationships despite higher geometric activity. In this article, we have shown that incorporation of sulfate in pre-annealed materials plays a pivotal role in boosting the OER activity of annealed Co3 O4 irrespective of the pre-annealed phase. In contrast to commonly used nitrate or carbonate that leaves the structure upon annealing and renders the resulting Co3 O4 with poor activity, sulfate remains in the annealed structure due to its thermal stability and causes a dramatic enhancement in the geometric electrocatalytic OER activity of resulting Co3 O4 compared to the pre-annealed phase. This was due to the "pore-alteration ability" and "crystallization hindrance effect" of sulfate ions that significantly alter the microstructure of the resulting Co3 O4 during annealing process by dramatically improving the surface area, pore size, and pore volume. Moreover, sulfate incorporation provided structures with considerably higher mesoporosity that is known to be conducive for reactant and product diffusion within the network. The improved textural properties led to better exposure of the catalytic centres to the electrolyte leading to higher geometric OER activity despite identical intrinsic activity of both sulfate free and incorporated Co3 O4 as confirmed from their specific activities. Further, the Co3 O4 synthesized by annealing sulfate incorporated precursor was found to be rich with oxygen defects that are known to increase the potency of a material towards electrocatalytic OER. The sulfate ions also etched out in the electrolyte during electrocatalysis leading to complete unblocking of the pores thereby helping in sustaining the high geometric OER activity. To our knowledge, this is the first report where the geometric electrocatalytic OER activity of an annealed Co3 O4 is significantly better compared to its pre-annealed phase and is in fact comparable to the activity of amorphous Co-hydroxide based compounds.
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Affiliation(s)
- Heramba V S R M Koppisetti
- NanoLab, Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Nadia, West Bengal, India
| | - Sagar Ganguli
- NanoLab, Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Nadia, West Bengal, India
| | - Sourav Ghosh
- NanoLab, Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Nadia, West Bengal, India
| | - Venkataramanan Mahalingam
- NanoLab, Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur Nadia, West Bengal, India
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28
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Philippi F, Welton T. Targeted modifications in ionic liquids - from understanding to design. Phys Chem Chem Phys 2021; 23:6993-7021. [PMID: 33876073 DOI: 10.1039/d1cp00216c] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Ionic liquids are extremely versatile and continue to find new applications in academia as well as industry. This versatility is rooted in the manifold of possible ion types, ion combinations, and ion variations. However, to fully exploit this versatility, it is imperative to understand how the properties of ionic liquids arise from their constituents. In this work, we discuss targeted modifications as a powerful tool to provide understanding and to enable design. A 'targeted modification' is a deliberate change in the structure of an ionic liquid. This includes chemical changes in an experiment as well as changes to the parameterisation in a computer simulation. In any case, such a change must be purposeful to isolate what is of interest, studying, as far as is possible, only one concept at a time. The concepts can then be used as design elements. However, it is often found that several design elements interact with each other - sometimes synergistically, and other times antagonistically. Targeted modifications are a systematic way of navigating these overlaps. We hope this paper shows that understanding ionic liquids requires experimentalists and theoreticians to join forces and provides a tool to tackle the difficult transition from understanding to design.
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Affiliation(s)
- Frederik Philippi
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, London W12 0BZ, UK.
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29
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Vibrational couplings and energy transfer pathways of water's bending mode. Nat Commun 2020; 11:5977. [PMID: 33239630 PMCID: PMC7688972 DOI: 10.1038/s41467-020-19759-w] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Accepted: 10/26/2020] [Indexed: 12/15/2022] Open
Abstract
Coupling between vibrational modes is essential for energy transfer and dissipation in condensed matter. For water, different O-H stretch modes are known to be very strongly coupled both within and between water molecules, leading to ultrafast dissipation and delocalization of vibrational energy. In contrast, the information on the vibrational coupling of the H-O-H bending mode of water is lacking, even though the bending mode is an essential intermediate for the energy relaxation pathway from the stretch mode to the heat bath. By combining static and femtosecond infrared, Raman, and hyper-Raman spectroscopies for isotopically diluted water with ab initio molecular dynamics simulations, we find the vibrational coupling of the bending mode differs significantly from the stretch mode: the intramode intermolecular coupling of the bending mode is very weak, in stark contrast to the stretch mode. Our results elucidate the vibrational energy transfer pathways of water. Specifically, the librational motion is essential for the vibrational energy relaxation and orientational dynamics of H-O-H bending mode. Vibrational energy transfer in water involves intermolecular coupling of O-H stretching modes, but much less is known about the role of the bending modes. Here the authors, combining static and femtosecond infrared, Raman, and hyper-Raman spectroscopy and ab initio molecular dynamics simulations, provide insight into the energy dynamics of the bend vibrations.
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30
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Carpenter WB, Yu Q, Hack JH, Dereka B, Bowman JM, Tokmakoff A. Decoding the 2D IR spectrum of the aqueous proton with high-level VSCF/VCI calculations. J Chem Phys 2020; 153:124506. [PMID: 33003749 DOI: 10.1063/5.0020279] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
The aqueous proton is a common and long-studied species in chemistry, yet there is currently intense interest devoted to understanding its hydration structure and transport dynamics. Typically described in terms of two limiting structures observed in gas-phase clusters, the Zundel H5O2 + and Eigen H9O4 + ions, the aqueous structure is less clear due to the heterogeneity of hydrogen bonding environments and room-temperature structural fluctuations in water. The linear infrared (IR) spectrum, which reports on structural configurations, is challenging to interpret because it appears as a continuum of absorption, and the underlying vibrational modes are strongly anharmonically coupled to each other. Recent two-dimensional IR (2D IR) experiments presented strong evidence for asymmetric Zundel-like motifs in solution, but true structure-spectrum correlations are missing and complicated by the anharmonicity of the system. In this study, we employ high-level vibrational self-consistent field/virtual state configuration interaction calculations to demonstrate that the 2D IR spectrum reports on a broad distribution of geometric configurations of the aqueous proton. We find that the diagonal 2D IR spectrum around 1200 cm-1 is dominated by the proton stretch vibrations of Zundel-like and intermediate geometries, broadened by the heterogeneity of aqueous configurations. There is a wide distribution of multidimensional potential shapes for the proton stretching vibration with varying degrees of potential asymmetry and confinement. Finally, we find specific cross peak patterns due to aqueous Zundel-like species. These studies provide clarity on highly debated spectral assignments and stringent spectroscopic benchmarks for future simulations.
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Affiliation(s)
- William B Carpenter
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - John H Hack
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Bogdan Dereka
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
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31
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Tang F, Ohto T, Sun S, Rouxel JR, Imoto S, Backus EHG, Mukamel S, Bonn M, Nagata Y. Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation. Chem Rev 2020; 120:3633-3667. [PMID: 32141737 PMCID: PMC7181271 DOI: 10.1021/acs.chemrev.9b00512] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Indexed: 12/26/2022]
Abstract
From a glass of water to glaciers in Antarctica, water-air and ice-air interfaces are abundant on Earth. Molecular-level structure and dynamics at these interfaces are key for understanding many chemical/physical/atmospheric processes including the slipperiness of ice surfaces, the surface tension of water, and evaporation/sublimation of water. Sum-frequency generation (SFG) spectroscopy is a powerful tool to probe the molecular-level structure of these interfaces because SFG can specifically probe the topmost interfacial water molecules separately from the bulk and is sensitive to molecular conformation. Nevertheless, experimental SFG has several limitations. For example, SFG cannot provide information on the depth of the interface and how the orientation of the molecules varies with distance from the surface. By combining the SFG spectroscopy with simulation techniques, one can directly compare the experimental data with the simulated SFG spectra, allowing us to unveil the molecular-level structure of water-air and ice-air interfaces. Here, we present an overview of the different simulation protocols available for SFG spectra calculations. We systematically compare the SFG spectra computed with different approaches, revealing the advantages and disadvantages of the different methods. Furthermore, we account for the findings through combined SFG experiments and simulations and provide future challenges for SFG experiments and simulations at different aqueous interfaces.
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Affiliation(s)
- Fujie Tang
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, Temple University, Philadelphia, Pennsylvania 19122, United States
| | - Tatsuhiko Ohto
- Graduate
School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan
| | - Shumei Sun
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Jérémy R. Rouxel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Sho Imoto
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Ellen H. G. Backus
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090 Vienna, Austria
| | - Shaul Mukamel
- Department
of Chemistry and Department of Physics and Astronomy, University of California, Irvine, Irvine, California 92697-2025, United States
| | - Mischa Bonn
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
| | - Yuki Nagata
- Max
Planck Institute for Polymer Research, Ackermannweg 10, Mainz 55128, Germany
- Department
of Physics, State Key Laboratory of Surface Physics and Key Laboratory
of Micro- and Nano-Photonic Structures (MOE), Fudan University, Shanghai 200433, China
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32
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Biswas A, Mallik BS. Distinctive behavior and two-dimensional vibrational dynamics of water molecules inside glycine solvation shell. RSC Adv 2020. [DOI: 10.1039/c9ra10521b] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
We present a first principles molecular dynamics study of a deuterated aqueous solution of a single glycine moiety to explore the structure, dynamics, and two-dimensional infrared spectra of water molecules found in the solvation shell of glycine.
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Affiliation(s)
- Aritri Biswas
- Department of Chemistry
- Indian Institute of Technology Hyderabad
- Sangareddy
- India
| | - Bhabani S. Mallik
- Department of Chemistry
- Indian Institute of Technology Hyderabad
- Sangareddy
- India
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33
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Tian T, Xu T, Kirk SR, Rongde IT, Tan YB, Manzhos S, Shigeta Y, Jenkins S. Intramolecular mode coupling of the isotopomers of water: a non-scalar charge density-derived perspective. Phys Chem Chem Phys 2020; 22:2509-2520. [DOI: 10.1039/c9cp05879f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Left: The BCP trajectories T(s) for H2O for the bending (Q1) mode, the axes labels of the trajectory T(s). The green spheres correspond to the bond critical point (BCPs). Right: The corresponding T(s) for H2O for the symmetric-stretch (Q2) mode.
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Affiliation(s)
- Tian Tian
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
| | - Steven R. Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
| | - Ian Tay Rongde
- Department of Mechanical Engineering
- National University of Singapore
- Singapore
| | - Yong Boon Tan
- Department of Mechanical Engineering
- National University of Singapore
- Singapore
| | - Sergei Manzhos
- Centre Énergie Matériaux Télécommunications
- Institut National de la Recherche Scientifique
- 1650 boulevard Lionel-Boulet
- Varennes QC J3X1S2
- Canada
| | - Yasuteru Shigeta
- Center for Computational Sciences
- University of Tsukuba
- Tsukuba 305-8577
- Japan
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
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34
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Gao Y, Gong N, Sun C, Fang W, Wang S, Men Z. Stimulated Raman scattering investigation of isotopic substitution H2O/D2O system. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2019.111923] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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35
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Shrestha BR, Pillai S, Santana A, Donaldson SH, Pascal TA, Mishra H. Nuclear Quantum Effects in Hydrophobic Nanoconfinement. J Phys Chem Lett 2019; 10:5530-5535. [PMID: 31365261 DOI: 10.1021/acs.jpclett.9b01835] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Nuclear quantum effects (NQEs) in water arise due to delocalization, zero-point energy (ZPE), and quantum tunneling of protons. Whereas quantum tunneling is significant only at low temperatures, proton delocalization and ZPE influence the properties of water at normal temperature and pressure (NTP), giving rise to isotope effects. However, the consequences of NQEs for interfaces of water with hydrophobic media, such as perfluorocarbons, have remained largely unexplored. Here, we reveal the existence and signature of NQEs modulating hydrophobic surface forces at NTP. Our experiments demonstrate that the attractive hydrophobic forces between molecularly smooth and rigid perfluorinated surfaces in nanoconfinement are ≈10% higher in H2O than in D2O, even though the contact angles of H2O and D2O on these surfaces are indistinguishable. Our molecular dynamics simulations show that the underlying cause of the difference includes the destabilizing effect of ZPE on the librational motions of interfacial H2O, which experiences larger quantum effects than D2O.
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Affiliation(s)
- Buddha Ratna Shrestha
- King Abdullah University of Science and Technology (KAUST) , Water Desalination and Reuse Center (WDRC), Biological and Environmental Sciences and Engineering (BESE) Division , Thuwal 23955-6900 , Saudi Arabia
| | - Sreekiran Pillai
- King Abdullah University of Science and Technology (KAUST) , Water Desalination and Reuse Center (WDRC), Biological and Environmental Sciences and Engineering (BESE) Division , Thuwal 23955-6900 , Saudi Arabia
| | - Adriano Santana
- King Abdullah University of Science and Technology (KAUST) , Water Desalination and Reuse Center (WDRC), Biological and Environmental Sciences and Engineering (BESE) Division , Thuwal 23955-6900 , Saudi Arabia
| | - Stephen H Donaldson
- Département de Physique , Ecole Normale Supérieure/PSL Research University, CNRS , 24 rue Lhomond , 75005 Paris , France
| | - Tod A Pascal
- ATLaS Laboratory, Department of NanoEngineering and Chemical Engineering , University of California, San Diego , La Jolla , California 92023 , United States
| | - Himanshu Mishra
- King Abdullah University of Science and Technology (KAUST) , Water Desalination and Reuse Center (WDRC), Biological and Environmental Sciences and Engineering (BESE) Division , Thuwal 23955-6900 , Saudi Arabia
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36
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Gleißner R, Creutzburg M, Noei H, Stierle A. Interaction of Water with Graphene/Ir(111) Studied by Vibrational Spectroscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:11285-11290. [PMID: 31361486 DOI: 10.1021/acs.langmuir.9b01205] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Water in confinement exhibits altered properties in molecular arrangement, bonding, and interaction with its neighboring environment, as compared to its bulk counterpart. In this work, periodically arranged D2O nano droplets of ∼1 nm size on top of a graphene/iridium moiré superstructure were investigated by Fourier transform infrared reflection absorption spectroscopy (FT-IRRAS) under ultrahigh vacuum conditions at ∼120 K. The IR bands of D2O clusters differ significantly from those observed for bulk D2O amorphous solid water or crystalline ice phases. Blue-shifted symmetric and asymmetric stretching bands with narrower band widths and modified band intensity ratios were observed, pointing to an enhanced internal order and a reduced nearest neighbor distance. Furthermore, two IR bands of "dangling" deuterium atoms were detected originating from threefold coordinated water molecules at the surface of the clusters and at their interface to the graphene layer. The latter arose only with the transition from the water clusters to an amorphous solid water layer. We propose that upon coalescence, opposing local dipoles trigger a hydrogen bond rearrangement at the interface. Our results represent a first step toward an atomistic understanding of water in confinement.
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Affiliation(s)
- Robert Gleißner
- Deutsches Elektronen-Synchrotron (DESY) , Hamburg D-22607 , Germany
- Fachbereich Physik , Universität Hamburg , Hamburg 20146 , Germany
| | - Marcus Creutzburg
- Deutsches Elektronen-Synchrotron (DESY) , Hamburg D-22607 , Germany
- Fachbereich Physik , Universität Hamburg , Hamburg 20146 , Germany
| | - Heshmat Noei
- Deutsches Elektronen-Synchrotron (DESY) , Hamburg D-22607 , Germany
| | - Andreas Stierle
- Deutsches Elektronen-Synchrotron (DESY) , Hamburg D-22607 , Germany
- Fachbereich Physik , Universität Hamburg , Hamburg 20146 , Germany
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37
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Pastorczak M, Nejbauer M, Radzewicz C. Femtosecond infrared pump-stimulated Raman probe spectroscopy: the first application of the method to studies of vibrational relaxation pathways in the liquid HDO/D 2O system. Phys Chem Chem Phys 2019; 21:16895-16904. [PMID: 31215570 DOI: 10.1039/c9cp00855a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have proposed and constructed a setup for a novel method of ultrafast vibrational spectroscopy: femtosecond infrared pump-stimulated Raman probe spectroscopy. This is the first time-resolved spectroscopy providing simultaneously a sub-100 fs time resolution, a spectral resolution better than 10 cm-1 and a spectral window covering an extremely broad range of molecular vibrations (at least: 200-4000 cm-1) with a "single laser shot". The new method was applied to study vibrational relaxation pathways in the liquid HDO/D2O system. We determined the lifetimes of OH stretching vibrations to be in the range 310-500 fs depending on the isotopic dilution, which is in good agreement with the results from pump-probe femtosecond infrared spectroscopy. Moreover, we observed a strong coupling of OH stretch to OD stretch vibrations and possibly also to the librational modes of water.
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Affiliation(s)
- Marcin Pastorczak
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland and Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Michał Nejbauer
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland and Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Czesław Radzewicz
- Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093 Warsaw, Poland
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38
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Yu Q, Carpenter WB, Lewis NHC, Tokmakoff A, Bowman JM. High-Level VSCF/VCI Calculations Decode the Vibrational Spectrum of the Aqueous Proton. J Phys Chem B 2019; 123:7214-7224. [PMID: 31361141 DOI: 10.1021/acs.jpcb.9b05723] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The hydrated excess proton is a common species in aqueous chemistry, which complexes with water in a variety of structures. The infrared spectrum of the aqueous proton is particularly sensitive to this array of structures, which manifests as continuous IR absorption from 1000 to 3000 cm-1 known as the "proton continuum". Because of the extreme breadth of the continuum and strong anharmonicity of the involved vibrational modes, this spectrum has eluded straightforward interpretation and simulation. Using protonated water hexamer clusters from reactive molecular dynamics trajectories, and focusing on their central H+(H2O)2 structures' spectral contribution, we reproduce the linear IR spectrum of the aqueous proton with a high-level local monomer quantum method and highly accurate many-body potential energy surface. The accuracy of this approach is first verified in the vibrational spectra of the two isomers of the protonated water hexamer in the gas phase. We then apply this approach to 800 H+(H2O)6 clusters, also written as [H+(H2O)2](H2O)4, drawn from multistate empirical valence bond simulations of the bulk liquid to calculate the infrared spectrum of the aqueous proton complex. Incorporation of anharmonic effects to the vibrational potential and quantum mechanical treatment of the proton produces a better agreement to the infrared spectrum compared to that of the double-harmonic approximation. We assess the correlation of the proton stretching mode with different atomistic coordinates, finding the best correlation with ⟨ROH⟩, the expectation value of the proton-oxygen distance ROH. We also decompose the IR spectrum based on normal mode vibrations and ⟨ROH⟩ to provide insight on how different frequency regions in the continuum report on different configurations, vibrational modes, and mode couplings.
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Affiliation(s)
- Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation , Emory University , Atlanta , Georgia 30322 , United States
| | - William B Carpenter
- Department of Chemistry, James Frank Institute, and Institute for Biophysical Dynamics , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Nicholas H C Lewis
- Department of Chemistry, James Frank Institute, and Institute for Biophysical Dynamics , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Andrei Tokmakoff
- Department of Chemistry, James Frank Institute, and Institute for Biophysical Dynamics , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Scientific Computation , Emory University , Atlanta , Georgia 30322 , United States
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39
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Sheu SY, Liu YC, Zhou JK, Schlag EW, Yang DY. Surface Topography Effects of Globular Biomolecules on Hydration Water. J Phys Chem B 2019; 123:6917-6932. [PMID: 31282162 DOI: 10.1021/acs.jpcb.9b03734] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Hydration water serves as a microscopic manifestation of structural stability and functions of biomolecules. To develop bio-nanomaterials in applications, it is important to study how the surface topography and heterogeneity of biomolecules result in their diversity of the hydration dynamics and energetics. We here performed molecular dynamics simulations combined with the steered molecular dynamics and umbrella sampling to investigate the dynamics and escape process associated with the free energy change of water molecules close to a globular biomolecule, i.e., hemoglobin (Hb) and G-quadruplex DNA (GDNA). The residence time, power of long-time tail, and dipole relaxation time were found to display drastic changes within the averaged hydration shell of 3.0-5.0 Å. Compared with bulk water, in the inner hydration shell, the water dipole moment displays a slower relaxation process and is more oriented toward GDNA than toward Hb, forming a hedgehog-like structure when it surrounds GDNA. In particular, a spine water structure is observed in the GDNA narrow groove. The water isotope effect not only prolongs the dynamic time scales of libration motion in the inner hydration shell and the dipole relaxation processes in the bulk but also strengthens the DNA spine water structure. The potential of the mean force profile reflects the integrity of the hydration shell structure and enables us to obtain detailed insights into the structures formed by water, such as the caged H-bond network and the edge bridge structures; it also reveals that local hydration shell free energy (LHSFE) depends on H-bond rupture processes and ranges from 0.2 to 4.2 kcal/mol. Our results demonstrate that the surface topography of a biomolecule influences the integrity of the hydration shell structure and LHSFE. Our studies are able to identify various further applications in the areas of microfluid devices and nano-dewetting on bioinspired surfaces.
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Affiliation(s)
- Sheh-Yi Sheu
- Department of Life Sciences and Institute of Genome Sciences , National Yang-Ming University , Taipei 112 , Taiwan.,Institute of Biomedical Informatics , National Yang-Ming University , Taipei 112 , Taiwan
| | - Yu-Cheng Liu
- Institute of Biomedical Informatics , National Yang-Ming University , Taipei 112 , Taiwan
| | - Jia-Kai Zhou
- Department of Life Sciences and Institute of Genome Sciences , National Yang-Ming University , Taipei 112 , Taiwan
| | - Edward W Schlag
- Institut für Physikalische und Theoretische Chemie , TU-München , Lichtenbergstr. 4 , 85748 Garching , Germany
| | - Dah-Yen Yang
- Institute of Atomic and Molecular Sciences , Academia Sinica , Taipei 106 , Taiwan
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40
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Piela K, Tyrode EC, Furó I. Cryoporometry in Femtoliter Volumes by Confocal Raman Spectroscopy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:8823-8828. [PMID: 31188011 DOI: 10.1021/acs.langmuir.9b00735] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The properties of porous material are largely dependent on the size, shape, and connectivity of the pores. Here, we present a method based on confocal Raman spectroscopy to quantify porosity using a cryoporometric approach. We show that the phase transition of water imbibed in porous silica can be accurately determined using two different, but complementary methodologies. The first one relies on integrating the temperature-dependent spectral intensities across the whole OH (H2O) or OD (D2O) stretching region. The second, more quantitative approach, deconvolutes the spectral contributions within the pores in terms of liquid and solid fractions. The results show the expected reciprocal dependence of the average phase transition point with pore size, as well as the typical hysteresis between the freezing and melting transitions. One of the key advantages of the confocal Raman approach is its high spatial resolution, with sampling volumes starting from just a few femtoliters, opening the possibility of mapping the structure in heterogeneous porous materials.
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Affiliation(s)
- Katarzyna Piela
- Department of Chemistry , KTH Royal Institute of Technology , SE-10044 Stockholm , Sweden
| | - Eric C Tyrode
- Department of Chemistry , KTH Royal Institute of Technology , SE-10044 Stockholm , Sweden
| | - István Furó
- Department of Chemistry , KTH Royal Institute of Technology , SE-10044 Stockholm , Sweden
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41
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Schabes BK, Hopkins EJ, Richmond GL. Molecular Interactions Leading to the Coadsorption of Surfactant Dodecyltrimethylammonium Bromide and Poly(styrenesulfonate) at the Oil/Water Interface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:7268-7276. [PMID: 31083894 DOI: 10.1021/acs.langmuir.9b00873] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The strong synergistic adsorption of mixed polymer/surfactant (P/S) systems at the oil/water interface shows promise for applications such as oil remediation and emulsion stabilization, especially with respect to the formation of tunable mesoscopic multilayers. There is some evidence that a combination of dodecyltrimethylammonium bromide (DTAB) and sodium poly(styrenesulfonate) (PSS) exhibits the adsorption of a secondary P/S layer, though the structure of this layer has long eluded researchers. The focus of this study is to determine whether the DTAB-assisted adsorption of PSS at the oil/water interface occurs as a single layer or with subsequent multilayers. The study presented uses vibrational sum-frequency spectroscopy and interfacial tensiometry to determine the degree of PSS adsorption and orientation of its charged groups relative to the interface at three representative concentrations of DTAB. At low and intermediate DTAB concentrations, a single mixed DTAB/PSS monolayer adsorbs at the oil/water interface. No PSS adsorbs above the system critical micelle concentration. The interfacial charge is found to be similar to that of P/S complexes solvated in the aqueous solution. The surface adsorbate and P/S complexes in the bulk both exhibit a charge inversion at around the same DTAB concentration. This study demonstrates the importance of techniques which can differentiate between coadsorbing species and calls into question current models of P/S adsorption at an oil/water interface.
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Affiliation(s)
- Brandon K Schabes
- Department of Chemistry and Biochemistry , University of Oregon , Eugene , Oregon 97403 , United States
| | - Emma J Hopkins
- Department of Chemistry and Biochemistry , University of Oregon , Eugene , Oregon 97403 , United States
| | - Geraldine L Richmond
- Department of Chemistry and Biochemistry , University of Oregon , Eugene , Oregon 97403 , United States
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42
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Kananenka AA, Hestand NJ, Skinner JL. OH-Stretch Raman Multivariate Curve Resolution Spectroscopy of HOD/H2O Mixtures. J Phys Chem B 2019; 123:5139-5146. [DOI: 10.1021/acs.jpcb.9b02686] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexei A. Kananenka
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| | - Nicholas J. Hestand
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
| | - J. L. Skinner
- Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, United States
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43
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Hunter KM, Shakib FA, Paesani F. Disentangling Coupling Effects in the Infrared Spectra of Liquid Water. J Phys Chem B 2018; 122:10754-10761. [DOI: 10.1021/acs.jpcb.8b09910] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Kelly M. Hunter
- Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, California 92093, United States
| | - Farnaz A. Shakib
- Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, California 92093, United States
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, California 92093, United States
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44
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Schabes BK, Altman RM, Richmond GL. Come Together: Molecular Details into the Synergistic Effects of Polymer–Surfactant Adsorption at the Oil/Water Interface. J Phys Chem B 2018; 122:8582-8590. [DOI: 10.1021/acs.jpcb.8b05432] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Brandon K. Schabes
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States
| | - Rebecca M. Altman
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States
| | - Geraldine L. Richmond
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States
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45
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Kananenka AA, Skinner JL. Fermi resonance in OH-stretch vibrational spectroscopy of liquid water and the water hexamer. J Chem Phys 2018; 148:244107. [DOI: 10.1063/1.5037113] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Alexei A. Kananenka
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
| | - J. L. Skinner
- Institute for Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA
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46
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Cyran JD, Backus EHG, Nagata Y, Bonn M. Structure from Dynamics: Vibrational Dynamics of Interfacial Water as a Probe of Aqueous Heterogeneity. J Phys Chem B 2018; 122:3667-3679. [PMID: 29490138 PMCID: PMC5900549 DOI: 10.1021/acs.jpcb.7b10574] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
![]()
The structural heterogeneity of water
at various interfaces can be revealed by time-resolved sum-frequency
generation spectroscopy. The vibrational dynamics of the O–H
stretch vibration of interfacial water can reflect structural variations.
Specifically, the vibrational lifetime is typically found to increase
with increasing frequency of the O–H stretch vibration, which
can report on the hydrogen-bonding heterogeneity of water. We compare
and contrast vibrational dynamics of water in contact with various
surfaces, including vapor, biomolecules, and solid interfaces. The
results reveal that variations in the vibrational lifetime with vibrational
frequency are very typical, and can frequently be accounted for by
the bulk-like heterogeneous response of interfacial water. Specific
interfaces exist, however, for which the behavior is less straightforward.
These insights into the heterogeneity of interfacial water thus obtained
contribute to a better understanding of complex phenomena taking place
at aqueous interfaces, such as photocatalytic reactions and protein
folding.
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Affiliation(s)
- Jenée D Cyran
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Ellen H G Backus
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Yuki Nagata
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
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47
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Jia L, Su G, Yuan Q, Zhang X, Zhou T. Difference in the micro-dynamics mechanism between aromatic nylon and aliphatic nylon during water absorption: spectroscopic evidence. Phys Chem Chem Phys 2018; 20:26764-26776. [DOI: 10.1039/c8cp05432k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The difference in the micro-dynamics mechanism between aromatic nylon and aliphatic nylon during water absorption was studied to explore the reason for the significantly smaller decline of barrier performance of poly(m-xylene adipamide) (MXD6) film than that of polyamide 6 (PA6) film under high humidity.
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Affiliation(s)
- Liyang Jia
- State Key Laboratory of Polymer Materials Engineering of China
- Polymer Research Institute
- Sichuan University
- Chengdu 610065
- China
| | - Gehong Su
- State Key Laboratory of Polymer Materials Engineering of China
- Polymer Research Institute
- Sichuan University
- Chengdu 610065
- China
| | - Qiang Yuan
- State Key Laboratory of Polymer Materials Engineering of China
- Polymer Research Institute
- Sichuan University
- Chengdu 610065
- China
| | - Xueqian Zhang
- State Key Laboratory of Polymer Materials Engineering of China
- Polymer Research Institute
- Sichuan University
- Chengdu 610065
- China
| | - Tao Zhou
- State Key Laboratory of Polymer Materials Engineering of China
- Polymer Research Institute
- Sichuan University
- Chengdu 610065
- China
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48
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Max JJ, Larouche P, Chapados C. Orthogonalyzed H 2 O and D 2 O species obtained from infrared spectra of liquid water at several temperatures. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.07.084] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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49
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Tran H, Cunha AV, Shephard JJ, Shalit A, Hamm P, Jansen TLC, Salzmann CG. 2D IR spectroscopy of high-pressure phases of ice. J Chem Phys 2017; 147:144501. [DOI: 10.1063/1.4993952] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Halina Tran
- Department of Chemistry, University of Zürich, Zürich, Switzerland
| | - Ana V. Cunha
- Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands
| | - Jacob J. Shephard
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Andrey Shalit
- Department of Chemistry, University of Zürich, Zürich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zürich, Zürich, Switzerland
| | - Thomas L. C. Jansen
- Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands
| | - Christoph G. Salzmann
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
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50
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Dereka B, Vauthey E. Direct local solvent probing by transient infrared spectroscopy reveals the mechanism of hydrogen-bond induced nonradiative deactivation. Chem Sci 2017; 8:5057-5066. [PMID: 28970892 PMCID: PMC5613230 DOI: 10.1039/c7sc00437k] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2017] [Accepted: 05/12/2017] [Indexed: 12/20/2022] Open
Abstract
The hydrogen-bond induced quenching of an excited chromophore is visualised by probing O–H vibrations of the interacting solvent molecules.
The fluorescence quenching of organic dyes via H-bonding interactions is a well-known phenomenon. However, the mechanism of this Hydrogen-Bond Induced Nonradiative Deactivation (HBIND) is not understood. Insight into this process is obtained by probing in the infrared the O–H stretching vibration of the solvent after electronic excitation of a dye with H-bond accepting cyano groups. The fluorescence lifetime of this dye was previously found to decrease from 1.5 ns to 110 ps when going from an aprotic solvent to the strongly protic hexafluoroisopropanol (HFP). Prompt strengthening of the H-bond with the dye was identified by the presence of a broad positive O–H band of HFP, located at lower frequency than the O–H band of the pure solvent. Further strengthening occurs within a few picoseconds before the excited H-bonded complex decays to the ground state in 110 ps. The latter process is accompanied by the dissipation of energy from the dye to the solvent and the rise of a characteristic hot solvent band in the transient spectrum. Polarization-resolved measurements evidence a collinear alignment of the nitrile and hydroxyl groups in the H-bonded complex, which persists during the whole excited-state lifetime. Measurements in other fluorinated alcohols and in chloroform/HFP mixtures reveal that the HBIND efficiency depends not only on the strength of the H-bond interactions between the dye and the solvent but also on the ability of the solvent to form an extended H-bond network. The HBIND process can be viewed as an enhanced internal conversion of an excited complex consisting of the dye molecule connected to a large H-bond network.
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Affiliation(s)
- Bogdan Dereka
- Department of Physical Chemistry , University of Geneva , 30 Quai Ernest-Ansermet , CH-1211 Geneva 4 , Switzerland .
| | - Eric Vauthey
- Department of Physical Chemistry , University of Geneva , 30 Quai Ernest-Ansermet , CH-1211 Geneva 4 , Switzerland .
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