1
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Łukaszewska I, Bukowczan A, Raftopoulos KN, Pielichowski K. Examining the Water-Polymer Interactions in Non-Isocyanate Polyurethane/Polyhedral Oligomeric Silsesquioxane Hybrid Hydrogels. Polymers (Basel) 2023; 16:57. [PMID: 38201722 PMCID: PMC10780322 DOI: 10.3390/polym16010057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 12/19/2023] [Accepted: 12/20/2023] [Indexed: 01/12/2024] Open
Abstract
Non-isocyanate polyurethane (NIPU) networks physically modified with octa(3-hydroxy-3-methylbutyldimethylsiloxy)POSS (8OHPOSS, 0-10 wt%) were conditioned in environments of different relative humidities (up to 97%) to study water-polymer interactions. The equilibrium sorption isotherms are of Brunauer type III in a water activity range of 0-0.97 and are discussed in terms of the Guggenheim (GAB) sorption model. The study shows that the introduction of 8OHPOSS, even in a large amount (10 wt%), does not hinder the water affinity of the NIPU network despite the hydrophobic nature of POSS; this is attributable to the homogenous dispersion of POSS in the polymer matrix. The shift in the urethane-derived carbonyl bands toward lower wavenumbers with a simultaneous shift in the urethane N-H bending bands toward higher wavenumbers exposes the breakage of polymer-polymer hydrogen bonds upon water uptake due to the formation of stronger water-polymer hydrogen bonds. Upon water absorption, a notable decrease in the glass transition temperature (Tg) is observed for all studied materials. The progressive reduction in Tg with water uptake is driven by plasticization and slaving mechanisms. POSS moieties are thought to impact slaving indirectly by slightly affecting water uptake at very high hydration levels.
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Affiliation(s)
- Izabela Łukaszewska
- Department of Chemistry and Technology of Polymers, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland; (A.B.); (K.N.R.)
| | | | | | - Krzysztof Pielichowski
- Department of Chemistry and Technology of Polymers, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland; (A.B.); (K.N.R.)
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2
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Electron microscopy and calorimetry of proteins in supercooled water. Sci Rep 2022; 12:16512. [PMID: 36192511 PMCID: PMC9529883 DOI: 10.1038/s41598-022-20430-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 09/13/2022] [Indexed: 11/08/2022] Open
Abstract
Some of the best nucleating agents in nature are ice-nucleating proteins, which boost ice growth better than any other material. They can induce immersion freezing of supercooled water only a few degrees below 0 °C. An open question is whether this ability also extends to the deposition mode, i.e., to water vapor. In this work, we used three proteins, apoferritin, InaZ (ice nucleation active protein Z), and myoglobin, of which the first two are classified as ice-nucleating proteins for the immersion freezing mode. We studied the ice nucleation ability of these proteins by differential scanning calorimetry (immersion freezing) and by environmental scanning electron microscopy (deposition freezing). Our data show that InaZ crystallizes water directly from the vapor phase, while apoferritin first condenses water in the supercooled state, and subsequently crystallizes it, just as myoglobin, which is unable to nucleate ice.
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3
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Reuhl M, Vogel M. Temperature-Dependent Dynamics at Protein-Solvent Interfaces. J Chem Phys 2022; 157:074705. [DOI: 10.1063/5.0105062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We perform differential scanning calorimetry, broadband dielectric spectroscopy (BDS), and nuclear magnetic resonance (NMR) studies to ascertain the molecular dynamics in mixtures of ethylene glycol with elastin or lysozyme over broad temperature ranges. To focus on the protein-solvent interface, we use mixtures with about equal numbers of amino acids and solvent molecules. The elastin and lysozyme mixtures show similar glass transition steps, which extend over a broad temperature range of 157-185K. The BDS and NMR studies yield fully consistent results for the fastest process P1, which is caused by the structural relaxation of ethylene glycol between the protein molecules and follows an Arrhenius law with an activation energy of Ea=0.63eV. It involves quasi-isotropic reorientation and is very similar in the elastin and lysozyme matrices but different from the alpha and beta relaxations of bulk ethylene glycol. Two slower BDS processes P2 and P3 have protein-dependent time scales, but exhibit a similar Arrhenius-like temperature dependence with an activation energy of Ea~0.81eV. However, P2 and P3 do not have a clear NMR signature. In particular, the NMR results for the lysozyme mixture reveal that the protein backbone does not show isotropic alpha-like motion on the P2 and P3 time scales but only restricted beta-like reorientation. The different activation energies of the P1 and P2/P3 processes do not support an intimate coupling of protein and ethylene glycol dynamics. The present results are compared with previous findings for mixtures of proteins with water or glycerol, implying qualitatively different dynamical couplings at various protein-solvent interfaces.
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Affiliation(s)
| | - Michael Vogel
- Institute of Condensed Matter Physics, TU Darmstadt, Germany
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4
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Melillo JH, Swenson J, Cerveny S. Influence of ice formation on the dynamic and thermodynamic properties of aqueous solutions. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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5
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Hartl J, Friesen S, Johannsmann D, Buchner R, Hinderberger D, Blech M, Garidel P. Dipolar Interactions and Protein Hydration in Highly Concentrated Antibody Formulations. Mol Pharm 2022; 19:494-507. [PMID: 35073097 DOI: 10.1021/acs.molpharmaceut.1c00587] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Molecular interaction mechanisms in high-concentrated protein systems are of fundamental importance for the rational development of biopharmaceuticals such as monoclonal antibody (mAb) formulations. In such high-concentrated protein systems, the intermolecular distances between mAb molecules are reduced to the size of the protein diameter (approx. 10 nm). Thus, protein-protein interactions are more pronounced at high concentrations; so a direct extrapolation of physicochemical properties obtained from measurements at a low protein concentration of the corresponding properties at a high protein concentration is highly questionable. Besides the charge-charge interaction, the effects of molecular crowding, dipolar interaction, changes in protein hydration, and self-assembling tendency become more relevant. Here, protein hydration, protein dipole moment, and protein-protein interactions were studied in protein concentrations up to 200 mg/mL (= 1.3 mM) in different formulations for selected mAbs using dielectric relaxation spectroscopy (DRS). These data are correlated with the second virial coefficient, A2, the diffusion interaction parameter, kD, the elastic shear modulus, G', and the dynamic viscosity, η. When large contributions of dipolar protein-protein interactions were observed, the tendency of self-assembling and an increase in solution viscosity were detected. These effects were examined using specific buffer conditions. Furthermore, different types of protein-water interactions were identified via DRS, whereby the effect of high protein concentration on protein hydration was investigated for different high-concentrated liquid formulations (HCLFs).
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Affiliation(s)
- Josef Hartl
- Institute of Chemistry, Martin-Luther-University Halle-Wittenberg, 06120 Halle (Saale), Germany
| | - Sergej Friesen
- Institute of Physical and Theoretical Chemistry, University of Regensburg, 93053 Regensburg, Germany
| | - Diethelm Johannsmann
- Institute of Physical Chemistry, Clausthal University of Technology, 38678 Clausthal-Zellerfeld, Germany
| | - Richard Buchner
- Institute of Physical and Theoretical Chemistry, University of Regensburg, 93053 Regensburg, Germany
| | - Dariush Hinderberger
- Institute of Chemistry, Martin-Luther-University Halle-Wittenberg, 06120 Halle (Saale), Germany
| | - Michaela Blech
- Boehringer Ingelheim Pharma GmbH & Co. KG, Innovation Unit, PDB, 88397 Biberach an der Riss, Germany
| | - Patrick Garidel
- Boehringer Ingelheim Pharma GmbH & Co. KG, Innovation Unit, PDB, 88397 Biberach an der Riss, Germany
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6
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Böhmer T, Horstmann R, Gabriel JP, Pabst F, Vogel M, Blochowicz T. Origin of Apparent Slow Solvent Dynamics in Concentrated Polymer Solutions. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01414] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Till Böhmer
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Robin Horstmann
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Jan Philipp Gabriel
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85281, United States
| | - Florian Pabst
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Michael Vogel
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Thomas Blochowicz
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
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7
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Melillo JH, Gabriel JP, Pabst F, Blochowicz T, Cerveny S. Dynamics of aqueous peptide solutions in folded and disordered states examined by dynamic light scattering and dielectric spectroscopy. Phys Chem Chem Phys 2021; 23:15020-15029. [PMID: 34190269 DOI: 10.1039/d1cp01893k] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Characterizing the segmental dynamics of proteins, and intrinsically disordered proteins in particular, is a challenge in biophysics. In this study, by combining data from broadband dielectric spectroscopy (BDS) and both depolarized (DDLS) and polarized (PDLS) dynamic light scattering, we were able to determine the dynamics of a small peptide [ε-poly(lysine)] in water solutions in two different conformations (pure β-sheet at pH = 10 and a more disordered conformation at pH = 7). We found that the segmental (α-) relaxation, as probed by DDLS, is faster in the disordered state than in the folded conformation. The water dynamics, as detected by BDS, is also faster in the disordered state. In addition, the combination of BDS and DDLS results allows us to confirm the molecular origin of water-related processes observed by BDS. Finally, we discuss the origin of two slow processes (A and B processes) detected by DDLS and PDLS in both conformations and usually observed in other types of water solutions. For fully homogeneous ε-PLL solutions at pH = 10, the A-DLS process is assigned to the diffusion of individual β-sheets. The combination of both techniques opens a route for understanding the dynamics of peptides and other biological solutions.
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Affiliation(s)
- Jorge H Melillo
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5 (20018), San Sebastián, Spain.
| | - Jan Philipp Gabriel
- School for Molecular Sciences, Arizona State University, Tempe, 85287, USA and Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Florian Pabst
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Thomas Blochowicz
- Institute for Condensed Matter Physics, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Silvina Cerveny
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5 (20018), San Sebastián, Spain. and Donostia International Physics Center, Paseo Manuel de Lardizabal 4 (20018), San Sebastián, Spain
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8
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Sasaki K, Takatsuka M, Shinyashiki N, Ngai KL. Relating the dynamics of hydrated poly(vinyl pyrrolidone) to the dynamics of highly asymmetric mixtures and polymer blends. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Steinrücken E, Wissel T, Brodrecht M, Breitzke H, Regentin J, Buntkowsky G, Vogel M. 2H NMR study on temperature-dependent water dynamics in amino-acid functionalized silica nanopores. J Chem Phys 2021; 154:114702. [PMID: 33752372 DOI: 10.1063/5.0044141] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We prepare various amino-acid functionalized silica pores with diameters of ∼6 nm and study the temperature-dependent reorientation dynamics of water in these confinements. Specifically, we link basic Lys, neutral Ala, and acidic Glu to the inner surfaces and combine 2H nuclear magnetic resonance spin-lattice relaxation and line shape analyses to disentangle the rotational motions of the surfaces groups and the crystalline and liquid water fractions coexisting below partial freezing. Unlike the crystalline phase, the liquid phase shows reorientation dynamics, which strongly depends on the chemistry of the inner surfaces. The water reorientation is slowest for the Lys functionalization, followed by Ala and Glu and, finally, the native silica pores. In total, the rotational correlation times of water at the different surfaces vary by about two orders of magnitude, where this span is largely independent of the temperature in the range ∼200-250 K.
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Affiliation(s)
- Elisa Steinrücken
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - Till Wissel
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Alarich-Weiss-Str. 8, 64287 Darmstadt, Germany
| | - Martin Brodrecht
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Alarich-Weiss-Str. 8, 64287 Darmstadt, Germany
| | - Hergen Breitzke
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Alarich-Weiss-Str. 8, 64287 Darmstadt, Germany
| | - Julia Regentin
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - Gerd Buntkowsky
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität Darmstadt, Alarich-Weiss-Str. 8, 64287 Darmstadt, Germany
| | - Michael Vogel
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
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10
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Friesen S, Fedotova MV, Kruchinin SE, Buchner R. Hydration and dynamics of L-glutamate ion in aqueous solution. Phys Chem Chem Phys 2021; 23:1590-1600. [PMID: 33409510 DOI: 10.1039/d0cp05489e] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Aqueous solutions of sodium l-glutamate (NaGlu) in the concentration range 0 < c/M ≤ 1.90 at 25 °C were investigated by dielectric relaxation spectroscopy (DRS) and statistical mechanics (1D-RISM and 3D-RISM calculations) to study the hydration and dynamics of the l-glutamate (Glu-) anion. Although at c → 0 water molecules beyond the first hydration shell are dynamically affected, Glu- hydration is rather fragile and for c ⪆ 0.3 M apparently restricted to H2O molecules hydrogen bonding to the carboxylate groups. These hydrating dipoles are roughly parallel to the anion moment, leading to a significantly enhanced effective dipole moment of Glu-. However, l-glutamate dynamics is determined by the rotational diffusion of individual anions under hydrodynamic slip boundary conditions. Thus, the lifetime of the hydrate complexes, as well as of possibly formed [Na+Glu-]0 ionpairs and l-glutamate aggregates, cannot exceed the characteristic timescale for Glu- rotation.
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Affiliation(s)
- Sergej Friesen
- Institut für Physikalische und Theoretische Chemie, Universität Regensburg, 93040 Regensburg, Germany.
| | - Marina V Fedotova
- G. A. Krestov Institute of Solution Chemistry, Russian Academy of Sciences, Akademicheskaya St. 1, 153045 Ivanovo, Russian Federation.
| | - Sergey E Kruchinin
- G. A. Krestov Institute of Solution Chemistry, Russian Academy of Sciences, Akademicheskaya St. 1, 153045 Ivanovo, Russian Federation.
| | - Richard Buchner
- Institut für Physikalische und Theoretische Chemie, Universität Regensburg, 93040 Regensburg, Germany.
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11
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Olsson C, Zangana R, Swenson J. Stabilization of proteins embedded in sugars and water as studied by dielectric spectroscopy. Phys Chem Chem Phys 2021; 22:21197-21207. [PMID: 32930314 DOI: 10.1039/d0cp03281f] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
In many products proteins have become an important component, and the long-term properties of these products are directly dependent on the stability of their proteins. To enhance this stability it has become common to add disaccharides in general, and trehalose in particular. However, the mechanisms by which disaccharides stabilize proteins and other biological materials are still not fully understood, and therefore we have here used broadband dielectric spectroscopy to investigate the stabilizing effect of the disaccharides trehalose and sucrose on myoglobin, with the aim to enhance this understanding in general and to obtain specific insights into why trehalose exhibits extraordinary stabilizing properties. The results show the existence of three or four clearly observed relaxation processes, where the three common relaxations are the local (β) water relaxation below the glass transition temperature (Tg), the structural α-relaxation of the solvent, observed above Tg, and an even slower protein relaxation due to large-scale conformational protein motions. For the trehalose containing samples with less than 50 wt% myoglobin a fourth relaxation process was observed due to a β-relaxation of trehalose below Tg. This latter process, which was assigned to intramolecular rotations of the monosaccharide rings in trehalose, could not be detected for high protein concentrations or for the sucrose containing samples. Since sucrose has previously been found to form more intramolecular hydrogen bonds at the present hydration levels, it is likely that this rotation becomes too slow to be observed in the case of sucrose. However, this sugar relaxation has probably less influence on the protein stability below Tg, where the better stabilizing effect of trehalose on proteins can be explained by our observation that trehalose slows down the water relaxation more than sucrose does. Finally, we show that the α-relaxation of the solvent and the large-scale protein motions exhibit similar temperature dependences, which suggests that these protein motions are slaved by the α-relaxation. Furthermore, the α-relaxation of the trehalose solution is slower than for the corresponding sucrose solution, and thereby also the protein motions become slower in the trehalose solution, which explains the more efficient stabilizing effect of trehalose on proteins above Tg.
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Affiliation(s)
- Christoffer Olsson
- Department of Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
| | - Rano Zangana
- Department of Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
| | - Jan Swenson
- Department of Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
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12
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Capaccioli S, Zheng L, Kyritsis A, Paciaroni A, Vogel M, Ngai KL. The Dynamics of Hydrated Proteins Are the Same as Those of Highly Asymmetric Mixtures of Two Glass-Formers. ACS OMEGA 2021; 6:340-347. [PMID: 33458485 PMCID: PMC7807739 DOI: 10.1021/acsomega.0c04655] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 12/08/2020] [Indexed: 05/31/2023]
Abstract
Customarily, the studies of dynamics of hydrated proteins are focused on the fast hydration water ν-relaxation, the slow structural α-relaxation responsible for a single glass transition, and the protein dynamic transition (PDT). Guided by the analogy with the dynamics of highly asymmetric mixtures of molecular glass-formers, we explore the possibility that the dynamics of hydrated proteins are richer than presently known. By providing neutron scattering, dielectric relaxation, calorimetry, and deuteron NMR data in two hydrated globular proteins, myoglobin and BSA, and the fibrous elastin, we show the presence of two structural α-relaxations, α1 and α2, and the hydration water ν-relaxation, all coupled together with interconnecting properties. There are two glass transition temperatures T g α1and T g α2 corresponding to vitrification of the α1 and α2 processes. Relaxation time τα2(T) of the α2-relaxation changes its Arrhenius temperature dependence to super-Arrhenius on crossing T g α1 from below. The ν-relaxation responds to the two vitrifications by changing the T-dependence of its relaxation time τν(T) on crossing consecutively T g α2 and T g α1. It generates the PDT at T d where τν(T d) matches about five times the experimental instrument timescale τexp, provided that T d > T g α1. This condition is satisfied by the hydrated globular proteins considered in this paper, and the ν-relaxation is in the liquid state with τν(T) having the super-Arrhenius temperature dependence. However, if T d < T g α1, the ν-relaxation fails to generate the PDT because it is in the glassy state and τν(T) has Arrhenius T-dependence, as in the case of hydrated elastin. Overall, the dynamics of hydrated proteins are the same as the dynamics of highly asymmetric mixtures of glass-formers. The results from this study have expanded the knowledge of the dynamic processes and their properties in hydrated proteins, and impact on research in this area is expected.
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Affiliation(s)
- Simone Capaccioli
- Dipartimento
di Fisica, Università di Pisa, Largo Bruno Pontecorvo 3, I-56127 Pisa, Italy
- CNR-IPCF, Largo Bruno Pontecorvo 3, I-56127 Pisa, Italy
| | - Lirong Zheng
- School
of Physics and Astronomy, Shanghai Jiao
Tong University, Shanghai 200240, China
- Institute
of Natural Sciences, Shanghai Jiao Tong
University, Shanghai 200240, China
| | - Apostolos Kyritsis
- Department
of Physics, National Technical University
of Athens, 157 80 Athens, Greece
| | | | - Michael Vogel
- Institute
of Condensed Matter Physics, Technische
Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - Kia L. Ngai
- CNR-IPCF, Largo Bruno Pontecorvo 3, I-56127 Pisa, Italy
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13
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Weigler M, Combarro-Palacios I, Cerveny S, Vogel M. On the microscopic origins of relaxation processes in aqueous peptide solutions undergoing a glass transition. J Chem Phys 2020; 152:234503. [PMID: 32571076 DOI: 10.1063/5.0010312] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We combine broadband dielectric spectroscopy (BDS) with 1H and 2H nuclear magnetic resonance (NMR) to study molecular dynamics in mixtures of ε-polylysine with H2O or D2O. In BDS, four relaxation processes can be attributed to molecular dynamics. While the fastest process P1 obeys the Arrhenius law, the slowest process P4 shows prominent non-Arrhenius behavior typical of structural α relaxation. For the intermediate processes P2 and P3, the temperature dependence changes at the glass transition temperature Tg. The 1H and 2H NMR results yield insights into the molecular origins of these relaxation phenomena. In these NMR analyses, we exploit, in addition to the isotope selectivity of the method, the possibility to distinguish between various types of motion based on their respective line-shape effects and the capability to single out specific molecular moieties based on different spin-lattice relaxation behaviors. In this way, we reveal that process P1 results from the rotation of side and end groups of the peptide, while process P2 is caused by a reorientation of essentially all water molecules, which are quasi-isotropic and survive well below Tg. As for the peptide backbone dynamics, we find evidence that rotational motion of polar groups is involved in process P3 and that nonpolar regions show a dynamical process, which is located between P3 and P4. Thus, the NMR analyses do not yield evidence for coexisting fast peptide-decoupled and slow peptide-coupled water species, which contribute to BDS processes P2 and P3, respectively, but minor bimodality of water motion may remain undetected. Finally, it is demonstrated that the proton/deuteron exchange needs to be considered when interpreting experimental results for molecular dynamics in aqueous peptide solutions.
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Affiliation(s)
- M Weigler
- Institut für Festkörperphysik, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
| | - I Combarro-Palacios
- Centro de Fisica Materiales (CSIC-UPV/EHU) - Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5, 20018 San Sebastian, Spain
| | - S Cerveny
- Centro de Fisica Materiales (CSIC-UPV/EHU) - Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5, 20018 San Sebastian, Spain
| | - M Vogel
- Institut für Festkörperphysik, Technische Universität Darmstadt, Hochschulstr. 6, 64289 Darmstadt, Germany
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14
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Henao A, Ruiz GN, Steinke N, Cerveny S, Macovez R, Guàrdia E, Busch S, McLain SE, Lorenz CD, Pardo LC. On the microscopic origin of the cryoprotective effect in lysine solutions. Phys Chem Chem Phys 2020; 22:6919-6927. [DOI: 10.1039/c9cp06192d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Lysine cryoprotective properties are due to the tight bonding of the first hydration Shell to the amino acid. However this effect is only possible for concentration up to 5.4 water molecules per lysine.
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Affiliation(s)
- Andrés Henao
- Grup de Caracterització de Materials
- Departament de Física
- ETSEIB, Universitat Politècnica de Catalunya
- E-08019 Barcelona
- Spain
| | - Guadalupe N. Ruiz
- Grup de Caracterització de Materials
- Departament de Física
- ETSEIB, Universitat Politècnica de Catalunya
- E-08019 Barcelona
- Spain
| | - Nicola Steinke
- Center for Marine Environmental Sciences (MARUM)
- University of Bremen
- 28359 Bremen
- Germany
| | - Silvina Cerveny
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Centre (MPC)
- Donostia International Physics Center (DIPC)
- 20018 San Sebastián
- Spain
| | - Roberto Macovez
- Grup de Caracterització de Materials
- Departament de Física
- ETSEIB, Universitat Politècnica de Catalunya
- E-08019 Barcelona
- Spain
| | - Elvira Guàrdia
- Grup de Simulació per Ordinador en Matèria Condensada
- Departament de Física
- Universitat Politècnica de Catalunya
- E-08034 Barcelona
- Spain
| | - Sebastian Busch
- German Engineering Materials Science Centre (GEMS) at Heinz Maier-Leibnitz Zentrum (MLZ)
- Helmholtz-Zentrum Geesthacht GmbH
- 85747 Garching bei München
- Germany
| | - Sylvia E. McLain
- Department of Chemistry
- School of Life Sciences
- University of Sussex
- Brighton
- UK
| | | | - Luis Carlos Pardo
- Grup de Caracterització de Materials
- Departament de Física
- ETSEIB, Universitat Politècnica de Catalunya
- E-08019 Barcelona
- Spain
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15
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Kripotou S, Zafeiris K, Culebras-Martínez M, Gallego Ferrer G, Kyritsis A. Dynamics of hydration water in gelatin and hyaluronic acid hydrogels. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2019; 42:109. [PMID: 31444585 DOI: 10.1140/epje/i2019-11871-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Accepted: 07/18/2019] [Indexed: 06/10/2023]
Abstract
We employed broadband dielectric spectroscopy (BDS), for the investigation of the water dynamics in partially hydrated hyaluronic acid (HA), and gelatin (Gel), enzymatically crosslinked hydrogels, in the water fraction ranges [Formula: see text]. Our results indicate that at low hydrations ([Formula: see text]), where the dielectric response of the hydrogels is identical during cooling and heating, water plasticizes strongly the polymeric matrix and is organized in clusters giving rise to [Formula: see text]-process, secondary water relaxation and to an additional slower relaxation process. This later process has been found to be related with the dc charge conductivity and can be described in terms of the conduction current relaxation mechanism. At slightly higher hydrations, however, always below the hydration level where ice is formed during cooling, we have recorded in HA hydrogel a strong water dielectric relaxation process, [Formula: see text], which has Arrhenius-like temperature dependence and large time scale resembling relaxation processes recorded in bulk low density amorphous solid water structures. This relaxation process shows a strong-to-fragile transition at [Formula: see text]C and our data suggest that the VTF-like process recorded at [Formula: see text]C is controlled by the same molecular process like long range charge transport. In addition, our data imply that the crossover temperature is related with the onset of structural rearrangements (increase in configurational entropy) of the macromolecules. In partially crystallized hydrogels ([Formula: see text]) HA exhibits at low temperatures the ice dielectric process consistent with the bulk hexagonal ice, whereas Gel hydrogel exhibits as main low temperature process a slow relaxation process that refers to open tetrahedral structures of water similar to low density amorphous ice structures and to bulk cubic ice. Regarding the water secondary relaxation processes, we have shown that the [Formula: see text]-process and the [Formula: see text] process are activated in water hydrogen bond networks with different structures.
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Affiliation(s)
- Sotiria Kripotou
- National Technical University of Athens, Physics Department, Iroon Polytechneiou 9, Zografou Campus, 15780, Athens, Greece
| | - Konstantinos Zafeiris
- National Technical University of Athens, Physics Department, Iroon Polytechneiou 9, Zografou Campus, 15780, Athens, Greece
| | - Maria Culebras-Martínez
- Centre for Biomaterials and Tissue Engineering (CBIT), Universitat Politècnica de València, Camino de vera s/n, 46022, Valencia, Spain
| | - Gloria Gallego Ferrer
- Centre for Biomaterials and Tissue Engineering (CBIT), Universitat Politècnica de València, Camino de vera s/n, 46022, Valencia, Spain
- Biomedical Research Networking Centre in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Valencia, Spain
| | - Apostolos Kyritsis
- National Technical University of Athens, Physics Department, Iroon Polytechneiou 9, Zografou Campus, 15780, Athens, Greece.
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16
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Capaccioli S, Ngai KL, Ancherbak S, Bertoldo M, Ciampalini G, Thayyil MS, Wang LM. The JG β-relaxation in water and impact on the dynamics of aqueous mixtures and hydrated biomolecules. J Chem Phys 2019; 151:034504. [DOI: 10.1063/1.5100835] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- S. Capaccioli
- CNR-IPCF, Dipartimento di Fisica, Largo Bruno Pontecorvo 3, I-56127, Pisa, Italy
- Dipartimento di Fisica, Università di Pisa, Largo Bruno Pontecorvo 3, I-56127, Pisa, Italy
| | - K. L. Ngai
- CNR-IPCF, Dipartimento di Fisica, Largo Bruno Pontecorvo 3, I-56127, Pisa, Italy
- State Key Lab of Metastable Materials Science and Technology, and College of Materials Science and Engineering, Yanshan University, Qinhuangdao, Hebei, 066004, China
| | - S. Ancherbak
- Dipartimento di Fisica, Università di Pisa, Largo Bruno Pontecorvo 3, I-56127, Pisa, Italy
| | - M. Bertoldo
- ISOF - CNR Area della Ricerca di Bologna, Via P. Gobetti 101, 40129 Bologna, Italy
| | - G. Ciampalini
- Dipartimento di Fisica, Università di Pisa, Largo Bruno Pontecorvo 3, I-56127, Pisa, Italy
| | | | - Li-Min Wang
- State Key Lab of Metastable Materials Science and Technology, and College of Materials Science and Engineering, Yanshan University, Qinhuangdao, Hebei, 066004, China
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17
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Nasedkin A, Cerveny S, Swenson J. Molecular Insights into Dipole Relaxation Processes in Water-Lysine Mixtures. J Phys Chem B 2019; 123:6056-6064. [PMID: 31268322 DOI: 10.1021/acs.jpcb.9b01928] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Dielectric spectroscopy is a robust method to investigate relaxations of molecular dipoles. It is particularly useful for studies of biological solutions because of the potential of this method to cover a broad range of dynamical time scales typical for such systems. However, this technique does not provide any information about the nature of the molecular motions, which leads to a certain underemployment of dielectric spectroscopy for gaining microscopic understanding of material properties. For such detailed understanding, computer simulations are valuable tools because they can provide information about the nature of molecular motions observed by, for example, dielectric spectroscopy and to further complement them with structural information. In this work, we acquire information about the nature of dipole relaxation, in n-lysine solutions by means of molecular dynamics simulations. Our results indicate that the experimentally observed main relaxation process of n-lysine has different origins for the single monomer and the polypeptide chains. The relaxation of 1-lysine is due to the motions of whole molecules, whereas the experimentally observed relaxation of 3-lysine and 4-lysine is due to the motions of the residues, which, in turn, are promoted by water relaxation. Furthermore, we propose a new structural model of the lysine amino acids, which can quantitatively account for the experimental dielectric relaxation data. Hydrogen bonding and the structure of water are also discussed in terms of their influence on relaxation processes.
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Affiliation(s)
- Alexandr Nasedkin
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden
| | - Silvina Cerveny
- Centro de Fisica de Materiales (CSIC, UPV/EHU)-Materials Physics Center (MPC) , Paseo Manuel de Lardizabal 5 , 20018 San Sebastián , Spain.,Donostia International Physics Center (DIPC) , 20018 San Sebastián , Spain
| | - Jan Swenson
- Department of Physics , Chalmers University of Technology , SE-412 96 Göteborg , Sweden
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18
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Cerveny S, Swenson J. Water dynamics in the hydration shells of biological and non-biological polymers. J Chem Phys 2019; 150:234904. [DOI: 10.1063/1.5096392] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Silvina Cerveny
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5, 20018 San Sebastián, Spain
- Donostia International Physics Center, Paseo Manuel de Lardizabal 4, 20018 San Sebastián, Spain
| | - Jan Swenson
- Department of Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden
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Combarro Palacios I, Olsson C, Kamma-Lorger CS, Swenson J, Cerveny S. Motions of water and solutes-Slaving versus plasticization phenomena. J Chem Phys 2019; 150:124902. [PMID: 30927900 DOI: 10.1063/1.5030064] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
It is well-accepted that hydration water is crucial for the structure, dynamics, and function of proteins. However, the exact role of water for the motions and functions of proteins is still debated. Experiments have shown that protein and water dynamics are strongly coupled but with water motions occurring on a considerably faster time scale (the so-called slaving behavior). On the other hand, water also reduces the conformational entropy of proteins and thereby acts as a plasticizer of them. In this work, we analyze the dynamics (using broadband dielectric spectroscopy) of some specific non-biological water solutions in a broad concentration range to elucidate the role of water in the dynamics of the solutes. Our results demonstrate that at low water concentrations (less than 5 wt. %), the plasticization phenomenon prevails for all the materials analyzed. However, at higher water concentrations, two different scenarios can be observed: the slaving phenomenon or plasticization, depending on the solute analyzed. These results generalize the slaving phenomenon to some, but not all, non-biological solutions and allow us to analyze the key factors for observing the slaving behavior in protein solutions as well as to reshaping the slaving concept.
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Affiliation(s)
- Izaskun Combarro Palacios
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5, 20018 San Sebastián, Spain
| | - Christoffer Olsson
- Department of Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden
| | | | - Jan Swenson
- Department of Physics, Chalmers University of Technology, SE-412 96 Göteborg, Sweden
| | - Silvina Cerveny
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Centre (MPC), Paseo Manuel de Lardizabal 5, 20018 San Sebastián, Spain
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20
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Zhang Q, Pan Z, Zhang L, Zhang R, Chen Z, Jin T, Wu T, Chen X, Zhuang W. Ion effect on the dynamics of water hydrogen bonding network: A theoretical and computational spectroscopy point of view. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1373] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Qiang Zhang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
- Department of ChemistryBohai UniversityJinzhouChina
| | - Zhijun Pan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
| | - Lu Zhang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
| | - Ruiting Zhang
- School of Physics and Optoelectronic EngineeringXidian UniversityXi'anChina
| | - Zhening Chen
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
| | - Tan Jin
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
| | - Tianmin Wu
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
| | - Xian Chen
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
| | - Wei Zhuang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of MatterChinese Academy of SciencesFuzhouChina
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21
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Kuo YH, Chiang YW. Slow Dynamics around a Protein and Its Coupling to Solvent. ACS CENTRAL SCIENCE 2018; 4:645-655. [PMID: 29806012 PMCID: PMC5968437 DOI: 10.1021/acscentsci.8b00139] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Indexed: 05/25/2023]
Abstract
Solvent is essential for protein dynamics and function, but its role in regulating the dynamics remains debated. Here, we employ saturation transfer electron spin resonance (ST-ESR) to explore the issue and characterize the dynamics on a longer (from μs to s) time scale than has been extensively studied. We first demonstrate the reliability of ST-ESR by showing that the dynamical changeovers revealed in the spectra agree to liquid-liquid transition (LLT) in the state diagram of the glycerol/water system. Then, we utilize ST-ESR with four different probes to systematically map out the variation in local (site-specific) dynamics around a protein surface at subfreezing temperatures (180-240 K) in 10 mol % glycerol/water mixtures. At highly exposed sites, protein and solvent dynamics are coupled, whereas they deviate from each other when temperature is greater than LLT temperature (∼190 K) of the solvent. At less exposed sites, protein however exhibits a dynamic, which is distinct from the bulk solvent, throughout the temperature range studied. Dominant dynamic components are thus revealed, showing that (from low to high temperatures) the overall structural fluctuation, rotamer dynamics, and internal side-chain dynamics, in turn, dominate the temperature dependence of spin-label motions. The structural fluctuation component is relatively slow, collective, and independent of protein structural segments, which is thus inferred to a fundamental dynamic component intrinsic to protein. This study corroborates that bulk solvent plasticizes protein and facilitates rather than slaves protein dynamics.
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Perticaroli S, Comez L, Sassi P, Morresi A, Fioretto D, Paolantoni M. Water-like Behavior of Formamide: Jump Reorientation Probed by Extended Depolarized Light Scattering. J Phys Chem Lett 2018; 9:120-125. [PMID: 29243934 DOI: 10.1021/acs.jpclett.7b02943] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Water is a strong self-associated liquid with peculiar properties that crucially depend on H-bonding. As regards its molecular dynamics, only recently has water reorientation been successfully described based on a jump mechanism, which is responsible for the overall H-bonding exchange. Here, using high-resolution broad-band depolarized light scattering, we have investigated the reorientational dynamics of formamide (FA) as a function of concentration from the neat liquid to diluted aqueous solutions. Our main findings indicate that in the diluted regime the water rearrangement can trigger the motion of FA solute molecules, which are forced to reorient at the same rate as water. This highlights an exceptional behavior of FA, which perfectly substitutes water within its network. Besides other fundamental implications connected with the relevance of FA, its water-like behavior provides rare experimental evidence of a solute whose dynamics is completely slaved to the solvent.
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Affiliation(s)
- S Perticaroli
- Shull Wollan Center, a Joint Institute for Neutron Sciences, Oak Ridge National Laboratory , Oak Ridge, Tennessee 37831, United States
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23
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Xu L, Bhattacharya S, Thompson D. The fold preference and thermodynamic stability of α-synuclein fibrils is encoded in the non-amyloid-β component region. Phys Chem Chem Phys 2018; 20:4502-4512. [DOI: 10.1039/c7cp08321a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The strain-dependent synucleinopathies may be partially imprinted in the fold-dependent thermodynamic properties of non-amyloid-β component (NAC) fibrils.
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Affiliation(s)
- Liang Xu
- Department of Physics
- Bernal Institute
- University of Limerick
- Ireland
| | | | - Damien Thompson
- Department of Physics
- Bernal Institute
- University of Limerick
- Ireland
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