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Mitra S, Denton JK, Kelleher PJ, Johnson MA, Guasco TL, Choi TH, Jordan KD. Water Network Shape-Dependence of Local Interactions with the Microhydrated -NO 2- and -CO 2- Anionic Head Groups by Cold Ion Vibrational Spectroscopy. J Phys Chem A 2022; 126:2471-2479. [PMID: 35418229 DOI: 10.1021/acs.jpca.2c00721] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report the structural evolutions of water networks and solvatochromic response of the CH3NO2- radical anion in the OH and CH stretching regions by analysis of the vibrational spectra displayed by cryogenically cooled CH3NO2-·(H2O)n=1-6 clusters. The OH stretching bands evolve with a surprisingly large discontinuity at n = 6, which features the emergence of an intense, strongly red-shifted band along with a weaker feature that appears in the region assigned to a free OH fundamental. Very similar behavior is displayed by the perdeuterated carboxylate clusters, RCO2-·(H2O)n=5-7 (R = CD3CD2), indicating that this behavior is a general feature in the microhydration of the triatomic anionic domain and not associated with CH oscillators. Electronic structure calculations trace this behavior to the formation of a "book" isomer of the water hexamer that adopts a configuration in which one of the water molecules resides in an acceptor-acceptor-donor (AAD) (A = acceptor, D = donor) H-bonding site. Excitation of the bound OH in the AAD site explores the local network topology best suited to stabilize an incipient -XO2H-OH-(H2O)2 intracluster proton-transfer reaction. These systems thus provide particularly clear examples where the network shape controls the potential energy landscape that governs water network-mediated, intracluster proton transfer. The CH stretching bands of the CH3NO2-·(H2O)n=1-6 clusters also exhibit strong solvatochromic shifts, but in this case, they smoothly blue-shift with increasing hydration with no discontinuity at n = 6. This behavior is analyzed in the context of the solute-ion polarizability response and partial charge transfer to the water networks.
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Affiliation(s)
- Sayoni Mitra
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, United States
| | - Joanna K Denton
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, United States
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520, United States
| | - Timothy L Guasco
- Department of Chemistry, Millikin University, Decatur, Illinois 62522, United States
| | - Tae Hoon Choi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
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2
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Mapping the temperature-dependent and network site-specific onset of spectral diffusion at the surface of a water cluster cage. Proc Natl Acad Sci U S A 2020; 117:26047-26052. [PMID: 33024015 DOI: 10.1073/pnas.2017150117] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We explore the kinetic processes that sustain equilibrium in a microscopic, finite system. This is accomplished by monitoring the spontaneous, time-dependent frequency evolution (the frequency autocorrelation) of a single OH oscillator, embedded in a water cluster held in a temperature-controlled ion trap. The measurements are carried out by applying two-color, infrared-infrared photodissociation mass spectrometry to the D3O+·(HDO)(D2O)19 isotopologue of the "magic number" protonated water cluster, H+·(H2O)21 The OH group can occupy any one of the five spectroscopically distinct sites in the distorted pentagonal dodecahedron cage structure. The OH frequency is observed to evolve over tens of milliseconds in the temperature range (90 to 120 K). Starting at 100 K, large "jumps" are observed between two OH frequencies separated by ∼300 cm-1, indicating migration of the OH group from the bound OH site at 3,350 cm-1 to the free position at 3,686 cm-1 Increasing the temperature to 110 K leads to partial interconversion among many sites. All sites are observed to interconvert at 120 K such that the distribution of the unique OH group among them adopts the form one would expect for a canonical ensemble. The spectral dynamics displayed by the clusters thus offer an unprecedented view into the molecular-level processes that drive spectral diffusion in an extended network of water molecules.
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3
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Riera M, Talbot JJ, Steele RP, Paesani F. Infrared signatures of isomer selectivity and symmetry breaking in the Cs+(H2O)3 complex using many-body potential energy functions. J Chem Phys 2020; 153:044306. [DOI: 10.1063/5.0013101] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Affiliation(s)
- Marc Riera
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Justin J. Talbot
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA
| | - Ryan P. Steele
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, USA
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
- Materials Science and Engineering, University of California San Diego, La Jolla, California 92093, USA
- San Diego Supercomputer Center, University of California San Diego, La Jolla, California 92093, USA
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4
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DeVine JA, Debnath S, Li YK, McCaslin LM, Schöllkopf W, Neumark DM, Asmis KR. Infrared photodissociation spectroscopy of D2-tagged CH3CO2−(H2O)0−2 anions. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1749953] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
| | - Sreekanta Debnath
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Leipzig, Germany
- Fritz-Haber-Institut der Max-Plank-Gesellschaft, Berlin, Germany
| | - Ya-Ke Li
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Leipzig, Germany
- Fritz-Haber-Institut der Max-Plank-Gesellschaft, Berlin, Germany
| | - Laura M. McCaslin
- Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem, Israel
- Department of Chemistry, University of California, Irvine, CA, USA
| | | | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, CA, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Knut R. Asmis
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Leipzig, Germany
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Bakels S, Gaigeot MP, Rijs AM. Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain. Chem Rev 2020; 120:3233-3260. [PMID: 32073261 PMCID: PMC7146864 DOI: 10.1021/acs.chemrev.9b00547] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
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Gas-phase, double
resonance IR spectroscopy has proven to be an
excellent approach to obtain structural information on peptides ranging
from single amino acids to large peptides and peptide clusters. In
this review, we discuss the state-of-the-art of infrared action spectroscopy
of peptides in the far-IR and THz regime. An introduction to the field
of far-IR spectroscopy is given, thereby highlighting the opportunities
that are provided for gas-phase research on neutral peptides. Current
experimental methods, including spectroscopic schemes, have been reviewed.
Structural information from the experimental far-IR spectra can be
obtained with the help of suitable theoretical approaches such as
dynamical DFT techniques and the recently developed Graph Theory.
The aim of this review is to underline how the synergy between far-IR
spectroscopy and theory can provide an unprecedented picture of the
structure of neutral biomolecules in the gas phase. The far-IR signatures
of the discussed studies are summarized in a far-IR map, in order
to gain insight into the origin of the far-IR localized and delocalized
motions present in peptides and where they can be found in the electromagnetic
spectrum.
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Affiliation(s)
- Sjors Bakels
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7-c, 6525 ED Nijmegen, The Netherlands
| | - Marie-Pierre Gaigeot
- LAMBE CNRS UMR8587, Université d'Evry val d'Essonne, Blvd F. Mitterrand, Bât Maupertuis, 91025 Evry, France
| | - Anouk M Rijs
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7-c, 6525 ED Nijmegen, The Netherlands
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6
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Capturing intrinsic site-dependent spectral signatures and lifetimes of isolated OH oscillators in extended water networks. Nat Chem 2019; 12:159-164. [PMID: 31767995 DOI: 10.1038/s41557-019-0376-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Accepted: 10/11/2019] [Indexed: 02/01/2023]
Abstract
The extremely broad infrared spectrum of water in the OH stretching region is a manifestation of how profoundly a water molecule is distorted when embedded in its extended hydrogen-bonding network. Many effects contribute to this breadth in solution at room temperature, which raises the question as to what the spectrum of a single OH oscillator would be in the absence of thermal fluctuations and coupling to nearby OH groups. We report the intrinsic spectral responses of isolated OH oscillators embedded in two cold (~20 K), hydrogen-bonded water cages adopted by the Cs+·(HDO)(D2O)19 and D3O+·(HDO)(D2O)19 clusters. Most OH oscillators yield single, isolated features that occur with linewidths that increase approximately linearly with their redshifts. Oscillators near 3,400 cm-1, however, occur with a second feature, which indicates that OH stretch excitation of these molecules drives low-frequency, phonon-type motions of the cage. The excited state lifetimes inferred from the broadening are considered in the context of fluctuations in the local electric fields that are available even at low temperature.
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Bajaj P, Zhuang D, Paesani F. Specific Ion Effects on Hydrogen-Bond Rearrangements in the Halide-Dihydrate Complexes. J Phys Chem Lett 2019; 10:2823-2828. [PMID: 31082245 DOI: 10.1021/acs.jpclett.9b00899] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Small aqueous ionic clusters represent ideal systems to investigate the microscopic hydrogen-bonding structure and dynamics in ion hydration shells. In this context, halide-dihydrate complexes are the smallest systems where the interplay between halide-water and water-water interactions can be studied simultaneously. Here, quantum molecular dynamics simulations unravel specific ion effects on the temperature-dependent structural transition in X-(H2O)2 complexes (X = Cl, Br, and I), which is induced by the breaking of the water-water hydrogen bond. A systematic analysis of the hydrogen-bonding rearrangements at low temperature provides fundamental insights into the competition between halide-water and water-water interactions depending on the properties of the halide ion. While the halide-water hydrogen-bond strength decreases going from Cl-(H2O)2 to I-(H2O)2, the opposite trend in observed in the strength of the water-water hydrogen-bond, suggesting that nontrivial many-body effects may also be at play in the hydration shells of halide ions in solution, especially in frustrated systems (e.g., interfaces) where the water molecules can have dangling OH bonds.
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Affiliation(s)
- Pushp Bajaj
- Department of Chemistry and Biochemistry , University of California, San Diego , La Jolla , California 92093 , United States
| | - Debbie Zhuang
- Department of Chemistry and Biochemistry , University of California, San Diego , La Jolla , California 92093 , United States
| | - Francesco Paesani
- Department of Chemistry and Biochemistry , University of California, San Diego , La Jolla , California 92093 , United States
- Materials Science and Engineering , University of California, San Diego , La Jolla , California 92093 , United States
- San Diego Supercomputer Center , University of California, San Diego , La Jolla , California 92093 , United States
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8
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Chen Y, Jin J, Xin K, Yu W, Xing X, Wang X, Wang G. Infrared photodissociation spectroscopic studies of ScO(H2O)n=1–3Ar+ cluster cations: solvation induced reaction of ScO+ and water. Phys Chem Chem Phys 2019; 21:15639-15646. [DOI: 10.1039/c9cp02171j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate the gaseous ScO(H2O)1–3Ar+ cations prepared by laser vaporization coupled with supersonic molecular beam using infrared photodissociation spectroscopy in the O–H stretching region.
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Affiliation(s)
- Yinjuan Chen
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Jiaye Jin
- Department of Chemistry
- Collaborative Innovation Center of Chemistry for Energy Materials
- Fudan University
- Shanghai 200438
- China
| | - Ke Xin
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Wenjie Yu
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Xiaopeng Xing
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Xuefeng Wang
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Guanjun Wang
- Department of Chemistry
- Collaborative Innovation Center of Chemistry for Energy Materials
- Fudan University
- Shanghai 200438
- China
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