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Tureček F. UV-vis spectroscopy of gas-phase ions. MASS SPECTROMETRY REVIEWS 2023; 42:206-226. [PMID: 34392556 DOI: 10.1002/mas.21726] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 06/07/2021] [Accepted: 06/08/2021] [Indexed: 06/13/2023]
Abstract
Photodissociation action spectroscopy has made a great progress in expanding investigations of gas-phase ion structures. This review deals with aspects of gas-phase ion electronic excitations that result in wavelength-dependent dissociation and light emission via fluorescence, chiefly covering the ultraviolet and visible regions of the spectrum. The principles are briefly outlined and a few examples of instrumentation are presented. The main thrust of the review is to collect and selectively present applications of UV-vis action spectroscopy to studies of stable gas-phase ion structures and combinations of spectroscopy with ion mobility, collision-induced dissociation, and ion-ion reactions leading to the generation of reactive intermediates and electronic energy transfer.
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Affiliation(s)
- František Tureček
- Department of Chemistry, University of Washington, Seattle, Washington, USA
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2
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Muramatsu S, Tokizane T, Inokuchi Y. One-Dimensionally Conjugated Carbocyanine Dyes Isolated under Cold Gas-Phase Conditions: Electronic Spectra and Photochemistry. J Phys Chem A 2022; 126:8127-8135. [DOI: 10.1021/acs.jpca.2c05111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Satoru Muramatsu
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima-shi, Hiroshima739-8526, Japan
| | - Takayuki Tokizane
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima-shi, Hiroshima739-8526, Japan
| | - Yoshiya Inokuchi
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima-shi, Hiroshima739-8526, Japan
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3
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On-the-fly investigation of XUV excited large molecular ions using a high harmonic generation light source. Sci Rep 2022; 12:13191. [PMID: 35915132 PMCID: PMC9343369 DOI: 10.1038/s41598-022-17416-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 07/25/2022] [Indexed: 11/25/2022] Open
Abstract
We present experiments where extreme ultraviolet femtosecond light pulses are used to photoexcite large molecular ions at high internal energy. This is done by combining an electrospray ionization source and a mass spectrometer with a pulsed light source based on high harmonic generation. This allows one to study the interaction between high energy photons and mass selected ions in conditions that are accessible on large-scale facilities. We show that even without an ion trapping device, systems as large as a protein can be studied. We observe light induced dissociative ionization and proton migration in model systems such as reserpine, insulin and cytochrome c. These results offer new perspectives to perform time-resolved experiments with ultrashort pulses at the heart of the emerging field of attosecond chemistry.
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Dimitriev OP, Piryatinski YP, Slominskii YL, Ryabitskii AB. "Awakening" of the S 2 Emission of Tricarbocyanine Dyes Stimulated by Interaction with Carbon Quantum Dots. J Phys Chem Lett 2022; 13:6619-6627. [PMID: 35834739 DOI: 10.1021/acs.jpclett.2c00805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Anti-Kasha emission (i.e., the emission from Sn (n > 1) excited levels) of infrared chromophores which possess intensive absorption and S1 emission in the near-infrared region, but which are spectrally silent in the visible, is a challenging task for relevant applications such as energy conversion, bioimaging, sensitization of solar cells, optical sensors, and so on. Here we demonstrate a dual emission of near-infrared tricarbocyanine dyes with a bright green S2 fluorescence, whose quantum yield increases by 2-4 times together with a strong enhancement of the spontaneous rate of S2 fluorescence, whereas the quantum yield of S1 emission decreases by 2-7 times, respectively, as a result of immobilization of the dye molecule via interaction with carbon quantum dots. The enhanced immobilization-induced S2 emission is shown to occur because of planarization of the molecule and freezing its rotational degrees of freedom as indicated by suppression of the dye hot-band absorption-assisted anti-Stokes S1 emission.
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Affiliation(s)
- Oleg P Dimitriev
- V. Lashkaryov Institute of Semiconductor Physics NAS of Ukraine, pr. Nauki 41, Kyiv 03028, Ukraine
| | | | - Yuri L Slominskii
- Institute of Organic Chemistry NAS of Ukraine, 5 Murmanska St., Kyiv 02660, Ukraine
| | - Aleksey B Ryabitskii
- Institute of Organic Chemistry NAS of Ukraine, 5 Murmanska St., Kyiv 02660, Ukraine
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5
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Lahiri J, Sandhu S, Levine BG, Dantus M. Human Serum Albumin Dimerization Enhances the S 2 Emission of Bound Cyanine IR806. J Phys Chem Lett 2022; 13:1825-1832. [PMID: 35171617 DOI: 10.1021/acs.jpclett.1c03735] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Cyanine molecules are important phototheranostic compounds given their high fluorescence yield in the near-infrared region of the spectrum. We report on the frequency and time-resolved spectroscopy of the S2 state of IR806, which demonstrates enhanced emission upon binding to the hydrophobic pocket of human serum albumin (HSA). From excitation-emission matrix spectra and electronic structure calculations, we identify the emission as one associated with a state having the polymethine chain twisted out of plane by 103°. In addition, we find that this configuration is significantly stabilized as the concentration of HSA increases. Spectroscopic changes associated with the S1 and S2 states of IR806 as a function of HSA concentration, as well as anisotropy measurements, confirm the formation of HSA dimers at concentrations greater than 10 μM. These findings imply that the longer-lived S2 state configuration can lead to more efficient phototherapy agents, and cyanine S2 spectroscopy may be a useful tool to determine the oligomerization state of HSA.
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Affiliation(s)
- Jurick Lahiri
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Shawn Sandhu
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Benjamin G Levine
- Institute for Advanced Computational Science and Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, United States
| | - Marcos Dantus
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
- Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan 48824, United States
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Hervé M, Boyer A, Brédy R, Compagnon I, Allouche AR, Lépine F. Controlled ultrafast ππ*-πσ* dynamics in tryptophan-based peptides with tailored micro-environment. Commun Chem 2021; 4:124. [PMID: 36697624 PMCID: PMC9814788 DOI: 10.1038/s42004-021-00557-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 07/26/2021] [Indexed: 01/28/2023] Open
Abstract
Ultrafast charge, energy and structural dynamics in molecules are driven by the topology of the multidimensional potential energy surfaces that determines the coordinated electronic and nuclear motion. These processes are also strongly influenced by the interaction with the molecular environment, making very challenging a general understanding of these dynamics on a microscopic level. Here we use electrospray and mass spectrometry technologies to produce isolated molecular ions with a controlled micro-environment. We measure ultrafast photo-induced ππ*-πσ* dynamics in tryptophan species in the presence of a single, charged adduct. A striking increase of the timescale by more than one order of magnitude is observed when changing the added adduct atom. A model is proposed to rationalize the results, based on the localized and delocalized effects of the adduct on the electronic structure of the molecule. These results offer perspectives to control ultrafast molecular processes by designing the micro-environment on the Angström length scale.
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Affiliation(s)
- Marius Hervé
- grid.436142.60000 0004 0384 4911Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, Villeurbanne, France
| | - Alexie Boyer
- grid.436142.60000 0004 0384 4911Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, Villeurbanne, France
| | - Richard Brédy
- grid.436142.60000 0004 0384 4911Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, Villeurbanne, France
| | - Isabelle Compagnon
- grid.436142.60000 0004 0384 4911Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, Villeurbanne, France
| | - Abdul-Rahman Allouche
- grid.436142.60000 0004 0384 4911Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, Villeurbanne, France
| | - Franck Lépine
- grid.436142.60000 0004 0384 4911Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, Villeurbanne, France
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7
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Guo X, Li Q, Xiang J, Liu M, Guan A, Tang Y, Sun H. A hybrid aggregate FRET probe from the mixed assembly of cyanine dyes for highly specific monitoring of mitochondria autophagy. Anal Chim Acta 2021; 1165:338561. [PMID: 33975703 DOI: 10.1016/j.aca.2021.338561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 03/27/2021] [Accepted: 04/19/2021] [Indexed: 10/21/2022]
Abstract
Mitochondria autophagy, also known as mitophagy, is a process in which mitochondria are wrapped by autophagosomes and fused with lysosomes for degradation. This process is essential for mitochondrial quality control. Here, we developed a hybrid aggregate FRET probe through mixed assembly of two cyanine dyes FMOTY and AMTC. In live cells, FMOTY and AMTC exist independently in lysosomes and mitochondria and will not produce interfering FRET background signals. The FRET signal is only generated when mitochondria is transported to lysosomes during mitophagy. This allows the hybridized aggregate to be used as a highly specific probe for monitoring mitophagy.
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Affiliation(s)
- Xiaomeng Guo
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Qian Li
- Center for Physicochemical Analysis and Measurement, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China
| | - Junfeng Xiang
- Center for Physicochemical Analysis and Measurement, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China
| | - Meirong Liu
- Center for Physicochemical Analysis and Measurement, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China
| | - Aijiao Guan
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China
| | - Yalin Tang
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Hongxia Sun
- Beijing National Laboratory for Molecular Sciences (BNLMS), State Key Laboratory for Structural Chemistry of Unstable and Stable Species, Institute of Chemistry Chinese Academy of Sciences, Beijing, 100190, PR China.
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Sissa C, Painelli A, Terenziani F, Trotta M, Ragni R. About the origin of the large Stokes shift in aminoalkyl substituted heptamethine cyanine dyes. Phys Chem Chem Phys 2019; 22:129-135. [PMID: 31821398 DOI: 10.1039/c9cp05473a] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Aminoalkyl-substituted heptamethine cyanine dyes are characterized by a large Stokes shift, an uncommon feature for cyanine molecules yet very promising for their application as fluorescent probes in bioimaging and as light harvesting antennas in biohybrid systems for solar energy conversion. The origin of this photophysical feature has not been adequately explored so far, and a combined experimental and theoretical work is herein provided to shed light on the role played by the central aminoalkyl substituent bound to the heptamethine cyanine backbone in defining the unusual properties of the dye. The spectra recorded in solvents of different polarities point to a marginal role of the medium in the definition of the Stokes shift, which conversely can be ascribed to the relaxation of the molecular geometry upon photoexcitation. This hypothesis is supported by an extensive theoretical investigation of the ground and excited states of the dye. TD-DFT results on the aminoalkyl-substituted dye and its unsubstituted precursor demonstrate a very similar cyanine-like structure for both molecules in the relaxed excited state. Conversely, in the ground state the amino substitution disrupts the conjugation in the polymethine chain, leading to a broken-symmetry, non-planar structure.
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Affiliation(s)
- Cristina Sissa
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy.
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